Wall clock time and date at job start Tue Mar 31 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.49756 * 2 1 4 4 C 1.53043 * 109.52354 * 120.08407 * 2 1 3 5 5 C 1.53042 * 109.53389 * 181.33150 * 4 2 1 6 6 H 1.09001 * 109.52620 * 58.60478 * 5 4 2 7 7 C 1.50704 * 109.49210 * 178.68463 * 5 4 2 8 8 O 1.20821 * 120.00374 * 359.83487 * 7 5 4 9 9 O 1.34226 * 119.99973 * 179.84282 * 7 5 4 10 10 C 1.53185 * 109.31591 * 298.63411 * 5 4 2 11 11 N 1.46923 * 108.77876 * 54.63722 * 10 5 4 12 12 C 1.34770 * 120.63444 * 126.36725 * 11 10 5 13 13 O 1.21347 * 120.00476 * 175.01524 * 12 11 10 14 14 C 1.49454 * 120.00039 * 355.01311 * 12 11 10 15 15 O 1.21345 * 120.00001 * 85.38351 * 14 12 11 16 16 N 1.34772 * 120.00254 * 265.39409 * 14 12 11 17 17 C 1.46498 * 120.00359 * 185.01268 * 16 14 12 18 18 C 1.53002 * 109.47540 * 175.01404 * 17 16 14 19 19 C 1.50693 * 115.54950 * 279.43414 * 18 17 16 20 20 H 1.07999 * 120.00322 * 95.14251 * 19 18 17 21 21 C 1.37885 * 119.99931 * 275.14384 * 19 18 17 22 22 N 1.31507 * 119.99702 * 5.10593 * 21 19 18 23 23 Si 1.86800 * 119.99961 * 185.10598 * 21 19 18 24 24 H 1.48502 * 109.46768 * 90.00083 * 23 21 19 25 25 H 1.48493 * 109.47035 * 209.99971 * 23 21 19 26 26 H 1.48501 * 109.47187 * 330.00258 * 23 21 19 27 27 C 1.53002 * 117.50078 * 133.72118 * 18 17 16 28 28 C 1.52999 * 60.00287 * 252.51255 * 27 18 17 29 29 C 1.46928 * 118.73486 * 306.39421 * 11 10 5 30 30 H 1.09005 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47205 * 299.99898 * 1 2 3 32 32 H 1.09005 * 109.47064 * 60.00167 * 1 2 3 33 33 H 1.08997 * 109.45488 * 301.35248 * 4 2 1 34 34 H 1.08998 * 109.45719 * 61.31494 * 4 2 1 35 35 H 0.96696 * 117.00446 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.58564 * 294.85122 * 10 5 4 37 37 H 1.09002 * 109.70172 * 174.49770 * 10 5 4 38 38 H 0.97006 * 119.99916 * 5.00077 * 16 14 12 39 39 H 1.09006 * 109.46477 * 295.01387 * 17 16 14 40 40 H 1.08998 * 109.47188 * 55.00689 * 17 16 14 41 41 H 0.97005 * 120.00033 * 185.00030 * 22 21 19 42 42 H 1.09007 * 117.49643 * 0.02562 * 27 18 17 43 43 H 1.08994 * 117.50081 * 145.02087 * 27 18 17 44 44 H 1.08998 * 117.49955 * 252.51152 * 28 27 18 45 45 H 1.09007 * 117.51892 * 107.47809 * 28 27 18 46 46 H 1.08996 * 109.59053 * 293.81410 * 29 11 10 47 47 H 1.09006 * 109.58137 * 173.39184 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5715 -0.6943 1.2653 6 1 3.9166 0.3396 1.2537 7 6 4.0734 -1.3782 2.5109 8 8 3.2882 -1.8387 3.3054 9 8 5.3927 -1.4756 2.7378 10 6 4.1059 -1.4255 0.0299 11 7 3.5047 -0.8281 -1.1703 12 6 4.2807 -0.3840 -2.1787 13 8 3.7715 0.0239 -3.2018 14 6 5.7685 -0.3940 -2.0369 15 8 6.3966 -1.3976 -2.3030 16 7 6.4125 0.7115 -1.6134 17 6 7.8768 0.7383 -1.5790 18 6 8.3522 2.1375 -1.1824 19 6 8.3661 3.1578 -2.2913 20 1 7.5236 3.8198 -2.4267 21 6 9.4545 3.2462 -3.1332 22 7 10.4355 2.3761 -3.0331 23 14 9.5356 4.6017 -4.4158 24 1 10.2023 5.7944 -3.8341 25 1 10.3092 4.1260 -5.5906 26 1 8.1596 4.9626 -4.8423 27 6 9.4457 2.2365 -0.1169 28 6 8.0068 2.6285 0.2250 29 6 2.0413 -0.7234 -1.2498 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6588 -0.2247 2.1388 34 1 1.6978 -1.7574 1.2349 35 1 5.6667 -1.9225 3.5503 36 1 3.8386 -2.4807 0.0858 37 1 5.1903 -1.3251 -0.0161 38 1 5.9064 1.4896 -1.3314 39 1 8.2364 0.0122 -0.8499 40 1 8.2681 0.4875 -2.5649 41 1 11.2335 2.4803 -3.5748 42 1 9.8268 1.3048 0.3013 43 1 10.1756 3.0396 -0.2179 44 1 7.7901 3.6895 0.3489 45 1 7.4406 1.9547 0.8682 46 1 1.6056 -1.7214 -1.2983 47 1 1.7633 -0.1575 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422706928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:08 Heat of formation + Delta-G solvation = -144.441125 kcal Electronic energy + Delta-G solvation = -30621.767568 eV Core-core repulsion = 26384.020256 eV Total energy + Delta-G solvation = -4237.747312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20797 -40.32846 -38.77923 -37.64684 -36.76212 -36.40726 -34.17394 -33.57185 -32.70708 -31.99812 -27.95563 -26.94818 -26.09646 -25.28893 -24.92405 -22.84465 -21.34637 -21.23545 -20.41810 -19.64733 -19.18791 -18.32313 -17.97425 -17.07767 -16.66469 -16.34962 -15.97380 -15.92787 -15.34891 -14.83335 -14.73350 -14.62161 -14.43687 -14.29490 -13.93936 -13.66384 -13.38117 -13.19507 -13.05040 -12.79893 -12.47042 -12.36644 -11.88883 -11.86197 -11.73671 -11.59793 -11.41513 -11.26526 -11.16332 -11.08386 -11.04278 -10.90618 -10.80539 -10.57260 -10.35158 -9.73224 -9.33347 -9.09701 -9.04667 -8.55533 -8.44768 -8.28435 -6.11823 -4.20255 1.80099 2.19346 2.29989 2.68400 2.81309 3.26453 3.34917 3.37170 3.63086 4.08869 4.27811 4.35188 4.39005 4.43937 4.68786 4.73317 4.94553 5.02455 5.06214 5.17192 5.21651 5.24208 5.25772 5.33364 5.42497 5.48913 5.60826 5.73909 5.78384 5.90317 5.93659 6.11027 6.19821 6.23190 6.32112 6.42059 6.56904 6.67359 6.90324 6.96318 7.00321 7.33596 7.40834 7.57162 7.74905 7.78569 7.84817 8.27994 8.35671 8.81656 9.47846 10.96613 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003400 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.646426 B = 8233.097093 C = 9230.508207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.100 4.100 5 C -0.098 4.098 6 H 0.120 0.880 7 C 0.489 3.511 8 O -0.513 6.513 9 O -0.508 6.508 10 C 0.118 3.882 11 N -0.601 5.601 12 C 0.520 3.480 13 O -0.505 6.505 14 C 0.505 3.495 15 O -0.524 6.524 16 N -0.683 5.683 17 C 0.159 3.841 18 C 0.026 3.974 19 C -0.501 4.501 20 H 0.061 0.939 21 C 0.074 3.926 22 N -0.874 5.874 23 Si 0.890 3.110 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.144 4.144 28 C -0.210 4.210 29 C 0.111 3.889 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.402 0.598 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.949 -6.377 11.560 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.101 0.899 4 C -0.137 4.137 5 C -0.118 4.118 6 H 0.137 0.863 7 C 0.330 3.670 8 O -0.401 6.401 9 O -0.320 6.320 10 C -0.005 4.005 11 N -0.337 5.337 12 C 0.303 3.697 13 O -0.378 6.378 14 C 0.284 3.716 15 O -0.401 6.401 16 N -0.333 5.333 17 C 0.037 3.963 18 C 0.026 3.974 19 C -0.538 4.538 20 H 0.079 0.921 21 C -0.131 4.131 22 N -0.510 5.510 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.182 4.182 28 C -0.248 4.248 29 C -0.011 4.011 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.272 0.728 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.900 -6.889 10.471 20.246 hybrid contribution 0.266 0.788 0.055 0.834 sum -15.634 -6.101 10.526 19.810 Atomic orbital electron populations 1.21731 0.93504 1.02386 1.02486 1.21534 0.96674 1.00421 0.93927 0.89948 1.21545 0.90948 1.02529 0.98700 1.21477 0.98075 1.02031 0.90221 0.86255 1.23148 0.80169 0.76309 0.87325 1.90726 1.56987 1.45067 1.47286 1.84589 1.25787 1.73760 1.47836 1.21649 0.99656 0.97073 0.82134 1.48058 1.07023 1.61009 1.17595 1.20757 0.88307 0.77105 0.83571 1.90790 1.73981 1.45483 1.27537 1.19909 0.87335 0.85066 0.79251 1.90801 1.66745 1.32545 1.49983 1.46152 1.09657 1.14917 1.62536 1.21324 0.75385 0.97472 1.02097 1.19045 0.98624 0.92040 0.87731 1.20393 1.03796 1.17272 1.12336 0.92116 1.24967 0.95989 0.95429 0.96680 1.69995 1.06834 1.33578 1.40608 0.86625 0.78311 0.82068 0.81273 1.20636 1.21173 1.19742 1.22503 0.90852 1.00917 1.03924 1.23002 1.00127 1.00089 1.01554 1.21837 0.78336 1.01510 0.99404 0.92242 0.91968 0.91946 0.90178 0.90464 0.72801 0.89968 0.87946 0.76374 0.93588 0.90091 0.92814 0.91543 0.89735 0.90215 0.91495 0.90810 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.11 -0.77 2.87 -90.50 -0.26 -1.03 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.10 -0.74 3.75 -26.69 -0.10 -0.84 16 5 C -0.10 -0.83 2.78 -91.65 -0.25 -1.09 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 7 C 0.49 4.58 7.63 36.01 0.27 4.85 16 8 O -0.51 -5.97 16.74 -18.75 -0.31 -6.28 16 9 O -0.51 -4.17 13.35 -39.25 -0.52 -4.70 16 10 C 0.12 1.20 5.57 -3.72 -0.02 1.18 16 11 N -0.60 -7.05 2.97 -173.28 -0.51 -7.57 16 12 C 0.52 8.34 7.54 -11.59 -0.09 8.26 16 13 O -0.51 -9.50 16.53 5.50 0.09 -9.41 16 14 C 0.51 9.26 5.61 -11.59 -0.07 9.20 16 15 O -0.52 -11.18 17.08 5.50 0.09 -11.09 16 16 N -0.68 -12.39 5.51 -60.73 -0.33 -12.73 16 17 C 0.16 3.40 5.57 -4.04 -0.02 3.38 16 18 C 0.03 0.59 1.36 -155.66 -0.21 0.38 16 19 C -0.50 -12.72 8.82 -34.44 -0.30 -13.03 16 20 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 21 C 0.07 1.93 5.40 -17.82 -0.10 1.84 16 22 N -0.87 -23.85 12.90 55.43 0.72 -23.14 16 23 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.14 -3.07 9.37 -26.73 -0.25 -3.32 16 28 C -0.21 -3.98 9.83 -26.73 -0.26 -4.25 16 29 C 0.11 1.03 5.70 -3.71 -0.02 1.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.59 8.07 -51.93 -0.42 0.18 16 34 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.41 1.69 9.10 45.56 0.41 2.10 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.21 6.30 -51.93 -0.33 0.88 16 38 H 0.40 6.58 8.40 -40.82 -0.34 6.24 16 39 H 0.05 0.95 7.94 -51.93 -0.41 0.53 16 40 H 0.08 2.04 8.12 -51.93 -0.42 1.62 16 41 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 42 H 0.07 1.34 8.08 -51.92 -0.42 0.92 16 43 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.04 7.04 -51.93 -0.37 0.68 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -32.61 395.66 -7.67 -40.28 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.49 Total: 7.03 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.34 Total: 6.04 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.13 Total: -43.44 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.65 Total: -31.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.61 -7.67 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.159 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds