Wall clock time and date at job start Tue Mar 31 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.49756 * 2 1 4 4 C 1.53043 * 109.52354 * 120.08407 * 2 1 3 5 5 C 1.53042 * 109.53389 * 181.33150 * 4 2 1 6 6 H 1.09001 * 109.52620 * 58.60478 * 5 4 2 7 7 C 1.50704 * 109.49210 * 178.68463 * 5 4 2 8 8 O 1.20821 * 120.00374 * 359.83487 * 7 5 4 9 9 O 1.34226 * 119.99973 * 179.84282 * 7 5 4 10 10 C 1.53185 * 109.31591 * 298.63411 * 5 4 2 11 11 N 1.46923 * 108.77876 * 54.63722 * 10 5 4 12 12 C 1.34770 * 120.63444 * 126.36725 * 11 10 5 13 13 O 1.21347 * 120.00476 * 175.01524 * 12 11 10 14 14 C 1.49454 * 120.00039 * 355.01311 * 12 11 10 15 15 O 1.21345 * 120.00001 * 85.38351 * 14 12 11 16 16 N 1.34772 * 120.00254 * 265.39409 * 14 12 11 17 17 C 1.46498 * 120.00359 * 185.01268 * 16 14 12 18 18 C 1.53002 * 109.47540 * 175.01404 * 17 16 14 19 19 C 1.50693 * 115.54950 * 279.43414 * 18 17 16 20 20 H 1.07999 * 120.00322 * 95.14251 * 19 18 17 21 21 C 1.37885 * 119.99931 * 275.14384 * 19 18 17 22 22 N 1.31507 * 119.99702 * 5.10593 * 21 19 18 23 23 Si 1.86800 * 119.99961 * 185.10598 * 21 19 18 24 24 H 1.48502 * 109.46768 * 90.00083 * 23 21 19 25 25 H 1.48493 * 109.47035 * 209.99971 * 23 21 19 26 26 H 1.48501 * 109.47187 * 330.00258 * 23 21 19 27 27 C 1.53002 * 117.50078 * 133.72118 * 18 17 16 28 28 C 1.52999 * 60.00287 * 252.51255 * 27 18 17 29 29 C 1.46928 * 118.73486 * 306.39421 * 11 10 5 30 30 H 1.09005 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47205 * 299.99898 * 1 2 3 32 32 H 1.09005 * 109.47064 * 60.00167 * 1 2 3 33 33 H 1.08997 * 109.45488 * 301.35248 * 4 2 1 34 34 H 1.08998 * 109.45719 * 61.31494 * 4 2 1 35 35 H 0.96696 * 117.00446 * 179.97438 * 9 7 5 36 36 H 1.09002 * 109.58564 * 294.85122 * 10 5 4 37 37 H 1.09002 * 109.70172 * 174.49770 * 10 5 4 38 38 H 0.97006 * 119.99916 * 5.00077 * 16 14 12 39 39 H 1.09006 * 109.46477 * 295.01387 * 17 16 14 40 40 H 1.08998 * 109.47188 * 55.00689 * 17 16 14 41 41 H 0.97005 * 120.00033 * 185.00030 * 22 21 19 42 42 H 1.09007 * 117.49643 * 0.02562 * 27 18 17 43 43 H 1.08994 * 117.50081 * 145.02087 * 27 18 17 44 44 H 1.08998 * 117.49955 * 252.51152 * 28 27 18 45 45 H 1.09007 * 117.51892 * 107.47809 * 28 27 18 46 46 H 1.08996 * 109.59053 * 293.81410 * 29 11 10 47 47 H 1.09006 * 109.58137 * 173.39184 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5715 -0.6943 1.2653 6 1 3.9166 0.3396 1.2537 7 6 4.0734 -1.3782 2.5109 8 8 3.2882 -1.8387 3.3054 9 8 5.3927 -1.4756 2.7378 10 6 4.1059 -1.4255 0.0299 11 7 3.5047 -0.8281 -1.1703 12 6 4.2807 -0.3840 -2.1787 13 8 3.7715 0.0239 -3.2018 14 6 5.7685 -0.3940 -2.0369 15 8 6.3966 -1.3976 -2.3030 16 7 6.4125 0.7115 -1.6134 17 6 7.8768 0.7383 -1.5790 18 6 8.3522 2.1375 -1.1824 19 6 8.3661 3.1578 -2.2913 20 1 7.5236 3.8198 -2.4267 21 6 9.4545 3.2462 -3.1332 22 7 10.4355 2.3761 -3.0331 23 14 9.5356 4.6017 -4.4158 24 1 10.2023 5.7944 -3.8341 25 1 10.3092 4.1260 -5.5906 26 1 8.1596 4.9626 -4.8423 27 6 9.4457 2.2365 -0.1169 28 6 8.0068 2.6285 0.2250 29 6 2.0413 -0.7234 -1.2498 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6588 -0.2247 2.1388 34 1 1.6978 -1.7574 1.2349 35 1 5.6667 -1.9225 3.5503 36 1 3.8386 -2.4807 0.0858 37 1 5.1903 -1.3251 -0.0161 38 1 5.9064 1.4896 -1.3314 39 1 8.2364 0.0122 -0.8499 40 1 8.2681 0.4875 -2.5649 41 1 11.2335 2.4803 -3.5748 42 1 9.8268 1.3048 0.3013 43 1 10.1756 3.0396 -0.2179 44 1 7.7901 3.6895 0.3489 45 1 7.4406 1.9547 0.8682 46 1 1.6056 -1.7214 -1.2983 47 1 1.7633 -0.1575 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422706928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:07 Heat of formation + Delta-G solvation = -167.107413 kcal Electronic energy + Delta-G solvation = -30622.750452 eV Core-core repulsion = 26384.020256 eV Total energy + Delta-G solvation = -4238.730196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.21339 -41.33159 -40.03806 -38.76530 -38.41063 -37.13132 -35.19485 -34.98555 -33.94893 -33.48213 -29.21630 -27.94013 -27.47067 -26.78239 -25.74113 -24.09167 -22.91225 -21.96334 -21.39831 -21.15719 -20.50836 -19.22865 -19.02981 -18.27754 -17.98944 -17.46861 -17.27394 -16.92677 -16.63560 -16.31706 -15.96303 -15.82805 -15.63104 -15.33815 -15.21993 -14.92131 -14.46576 -14.31944 -14.22282 -13.76164 -13.65636 -13.38821 -13.07493 -13.01260 -12.98702 -12.77995 -12.75375 -12.54135 -12.41130 -12.37922 -12.00160 -11.95980 -11.90841 -11.68731 -11.51438 -11.49199 -10.89273 -10.80061 -10.45170 -10.12353 -10.02172 -9.99127 -8.11598 -6.23346 0.86747 1.00773 1.16595 1.40242 1.41350 1.44746 1.51680 2.00963 2.42269 2.44142 3.18360 3.25393 3.37813 3.56225 3.58663 3.80314 3.80857 4.00701 4.23944 4.24467 4.35135 4.37823 4.55767 4.56553 4.64554 4.64639 4.66734 4.71406 4.80632 4.88874 4.93436 5.05044 5.06658 5.15302 5.17634 5.30941 5.31352 5.34911 5.48174 5.60195 5.62886 5.69541 5.78056 5.81637 6.32778 6.36810 6.55155 6.82670 6.90970 6.97204 7.46732 8.96316 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003400 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.646426 B = 8233.097093 C = 9230.508207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.081 0.919 4 C -0.094 4.094 5 C -0.093 4.093 6 H 0.128 0.872 7 C 0.496 3.504 8 O -0.536 6.536 9 O -0.512 6.512 10 C 0.116 3.884 11 N -0.584 5.584 12 C 0.525 3.475 13 O -0.539 6.539 14 C 0.506 3.494 15 O -0.558 6.558 16 N -0.674 5.674 17 C 0.177 3.823 18 C -0.002 4.002 19 C -0.507 4.507 20 H 0.057 0.943 21 C 0.027 3.973 22 N -0.904 5.904 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.291 1.291 26 H -0.271 1.271 27 C -0.153 4.153 28 C -0.171 4.171 29 C 0.106 3.894 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.430 0.570 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 -6.126 13.314 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.132 4.132 5 C -0.113 4.113 6 H 0.146 0.854 7 C 0.339 3.661 8 O -0.426 6.426 9 O -0.326 6.326 10 C -0.007 4.007 11 N -0.317 5.317 12 C 0.308 3.692 13 O -0.415 6.415 14 C 0.287 3.713 15 O -0.437 6.437 16 N -0.324 5.324 17 C 0.054 3.946 18 C -0.003 4.003 19 C -0.545 4.545 20 H 0.075 0.925 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.769 3.231 24 H -0.199 1.199 25 H -0.218 1.218 26 H -0.196 1.196 27 C -0.191 4.191 28 C -0.208 4.208 29 C -0.015 4.015 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.292 0.708 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.953 -6.627 12.286 22.742 hybrid contribution 0.885 0.660 -0.425 1.183 sum -17.068 -5.968 11.860 21.624 Atomic orbital electron populations 1.21717 0.92062 1.03059 1.02969 1.21470 0.97701 0.99882 0.92539 0.90101 1.21527 0.89994 1.02783 0.98890 1.21460 0.98820 1.02087 0.88915 0.85414 1.23160 0.80232 0.75652 0.87095 1.90724 1.57591 1.46136 1.48174 1.84560 1.25166 1.73793 1.49060 1.21765 0.98806 0.98095 0.82056 1.48061 1.07938 1.58966 1.16755 1.20210 0.87154 0.77710 0.84153 1.90782 1.73980 1.47762 1.29002 1.20353 0.88572 0.84317 0.78052 1.90776 1.67924 1.33740 1.51261 1.45971 1.08513 1.15419 1.62508 1.20855 0.76998 0.97185 0.99608 1.19019 1.00760 0.91900 0.88572 1.20727 1.03280 1.17485 1.12990 0.92494 1.25617 0.96128 0.97227 0.98436 1.70094 1.07284 1.34985 1.41745 0.85799 0.78096 0.80120 0.79129 1.19882 1.21753 1.19553 1.22441 0.91599 1.00850 1.04218 1.23007 0.98006 1.00994 0.98770 1.22122 0.76320 1.02826 1.00211 0.91513 0.91125 0.91861 0.89568 0.90238 0.70813 0.88509 0.89495 0.75126 0.92784 0.94709 0.93170 0.90494 0.92037 0.89716 0.88168 0.88944 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 71.98 0.66 -0.55 16 2 C -0.10 -1.13 2.87 -10.72 -0.03 -1.16 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.09 -1.13 3.75 30.62 0.11 -1.02 16 5 C -0.09 -1.34 2.78 -11.46 -0.03 -1.37 16 6 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 7 C 0.50 8.09 7.63 71.24 0.54 8.64 16 8 O -0.54 -11.29 16.74 21.98 0.37 -10.92 16 9 O -0.51 -7.20 13.35 -51.38 -0.69 -7.89 16 10 C 0.12 2.11 5.57 86.36 0.48 2.60 16 11 N -0.58 -12.78 2.97 -820.49 -2.44 -15.22 16 12 C 0.53 16.59 7.54 87.27 0.66 17.25 16 13 O -0.54 -20.25 16.53 -3.24 -0.05 -20.31 16 14 C 0.51 18.58 5.61 87.27 0.49 19.07 16 15 O -0.56 -24.20 17.08 -3.23 -0.06 -24.26 16 16 N -0.67 -24.20 5.51 -464.41 -2.56 -26.76 16 17 C 0.18 7.60 5.57 86.38 0.48 8.08 16 18 C 0.00 -0.08 1.36 -52.93 -0.07 -0.15 16 19 C -0.51 -25.83 8.82 25.60 0.23 -25.61 16 20 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 21 C 0.03 1.43 5.40 84.66 0.46 1.88 16 22 N -0.90 -50.46 12.90 21.45 0.28 -50.18 16 23 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C -0.15 -6.42 9.37 30.59 0.29 -6.13 16 28 C -0.17 -6.04 9.83 30.60 0.30 -5.74 16 29 C 0.11 1.74 5.70 86.36 0.49 2.23 16 30 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.09 1.00 8.07 -2.39 -0.02 0.98 16 34 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 35 H 0.43 2.54 9.10 -74.06 -0.67 1.87 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16 38 H 0.41 13.00 8.40 -92.70 -0.78 12.22 16 39 H 0.05 2.21 7.94 -2.38 -0.02 2.19 16 40 H 0.03 1.81 8.12 -2.39 -0.02 1.79 16 41 H 0.26 14.00 8.32 -92.70 -0.77 13.23 16 42 H 0.08 3.02 8.08 -2.38 -0.02 3.00 16 43 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.08 2.94 8.14 -2.39 -0.02 2.93 16 45 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 1.73 7.04 -2.38 -0.02 1.71 16 Total: -1.00 -71.31 395.66 1.49 -69.83 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.45 Total: 22.91 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.06 Total: 18.01 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -4.72 Total: -92.16 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -0.43 Total: -63.37 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.31 1.49 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422706928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.282 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds