Wall clock time and date at job start Tue Mar 31 2020 21:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.40793 * 2 1 4 4 C 1.50421 * 109.25551 * 119.73809 * 2 1 3 5 5 C 1.38817 * 117.78679 * 289.30909 * 4 2 1 6 6 C 1.38187 * 120.54668 * 179.54100 * 5 4 2 7 7 F 1.35097 * 120.16010 * 180.02562 * 6 5 4 8 8 C 1.38450 * 119.68674 * 0.04361 * 6 5 4 9 9 C 1.38082 * 119.77455 * 0.19374 * 8 6 5 10 10 F 1.35096 * 119.72067 * 179.97438 * 9 8 6 11 11 C 1.37643 * 122.32570 * 109.25939 * 4 2 1 12 12 C 1.50602 * 122.87879 * 0.67561 * 11 4 2 13 13 C 1.52788 * 110.86080 * 340.22440 * 12 11 4 14 14 N 1.46684 * 109.43977 * 240.10409 * 2 1 3 15 15 C 1.34772 * 121.35010 * 104.28358 * 14 2 1 16 16 O 1.21279 * 120.00159 * 359.72708 * 15 14 2 17 17 C 1.50707 * 119.99926 * 179.72270 * 15 14 2 18 18 H 1.08990 * 109.46905 * 40.00676 * 17 15 14 19 19 N 1.46898 * 109.47045 * 160.00562 * 17 15 14 20 20 C 1.52996 * 109.47058 * 280.00535 * 17 15 14 21 21 C 1.52998 * 109.46929 * 175.00132 * 20 17 15 22 22 C 1.50706 * 109.47348 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99302 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00436 * 179.72505 * 22 21 20 25 25 N 1.31515 * 119.99684 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00405 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47154 * 89.99418 * 26 24 22 28 28 H 1.48493 * 109.47010 * 209.99942 * 26 24 22 29 29 H 1.48502 * 109.46736 * 329.99638 * 26 24 22 30 30 H 1.08998 * 109.47459 * 179.89719 * 1 2 3 31 31 H 1.09005 * 109.47112 * 299.89679 * 1 2 3 32 32 H 1.09004 * 109.47053 * 59.89187 * 1 2 3 33 33 H 1.08006 * 119.72850 * 359.56556 * 5 4 2 34 34 H 1.08004 * 120.11305 * 180.21166 * 8 6 5 35 35 H 1.08999 * 109.20623 * 219.86847 * 12 11 4 36 36 H 1.08995 * 109.16871 * 100.55477 * 12 11 4 37 37 H 1.09008 * 109.77765 * 287.81938 * 13 12 11 38 38 H 1.09003 * 109.77655 * 167.01916 * 13 12 11 39 39 H 1.00906 * 111.00186 * 59.99876 * 19 17 15 40 40 H 1.00895 * 111.00368 * 183.95173 * 19 17 15 41 41 H 1.09000 * 109.47441 * 55.00222 * 20 17 15 42 42 H 1.09002 * 109.47087 * 294.99668 * 20 17 15 43 43 H 1.09001 * 109.47671 * 60.00109 * 21 20 17 44 44 H 1.08998 * 109.47454 * 300.00107 * 21 20 17 45 45 H 0.97004 * 120.00247 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0260 -0.7044 1.2330 5 6 1.8560 -0.0675 2.4547 6 6 2.2820 -0.6671 3.6246 7 9 2.1122 -0.0405 4.8093 8 6 2.8839 -1.9130 3.5768 9 6 3.0574 -2.5445 2.3612 10 9 3.6454 -3.7600 2.3158 11 6 2.6309 -1.9397 1.1819 12 6 2.8617 -2.6843 -0.1067 13 6 1.9439 -2.1599 -1.2100 14 7 2.0181 -0.6894 -1.1992 15 6 2.5193 -0.0049 -2.2464 16 8 2.5688 1.2063 -2.2114 17 6 3.0182 -0.7447 -3.4609 18 1 2.3478 -1.5753 -3.6811 19 7 3.0580 0.1703 -4.6094 20 6 4.4243 -1.2826 -3.1884 21 6 4.8813 -2.1380 -4.3718 22 6 6.2666 -2.6674 -4.1037 23 1 6.7708 -2.4182 -3.1817 24 6 6.8882 -3.4740 -5.0332 25 7 6.2720 -3.7818 -6.1535 26 14 8.6051 -4.1307 -4.7006 27 1 8.5085 -5.4361 -3.9994 28 1 9.3235 -4.3120 -5.9875 29 1 9.3480 -3.1660 -3.8505 30 1 -0.3634 -1.0276 -0.0018 31 1 -0.3633 0.5123 0.8909 32 1 -0.3633 0.5155 -0.8890 33 1 1.3867 0.9046 2.4912 34 1 3.2163 -2.3895 4.4873 35 1 2.6629 -3.7443 0.0511 36 1 3.8998 -2.5562 -0.4131 37 1 0.9190 -2.4789 -1.0198 38 1 2.2755 -2.5389 -2.1767 39 1 3.6733 0.9496 -4.4299 40 1 3.3278 -0.3170 -5.4508 41 1 4.4118 -1.8907 -2.2839 42 1 5.1131 -0.4483 -3.0559 43 1 4.8939 -1.5300 -5.2763 44 1 4.1925 -2.9723 -4.5044 45 1 6.7092 -4.3496 -6.8073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424143605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:48 Heat of formation + Delta-G solvation = -128.696472 kcal Electronic energy + Delta-G solvation = -29960.559372 eV Core-core repulsion = 25612.407284 eV Total energy + Delta-G solvation = -4348.152088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09850 -50.05472 -41.89645 -40.17505 -37.40860 -37.13200 -34.91016 -34.36766 -32.93845 -31.68442 -30.68904 -29.28273 -28.18664 -26.12646 -25.20892 -24.65453 -23.18204 -22.57001 -21.66414 -19.75160 -19.09373 -18.86429 -18.44068 -18.02440 -17.38400 -17.08516 -16.95060 -16.50612 -16.39149 -16.27657 -16.14599 -15.98273 -15.58373 -15.51987 -15.35835 -14.85576 -14.65810 -14.32808 -14.18950 -13.99575 -13.88906 -13.50698 -13.36860 -13.27619 -12.99578 -12.91314 -12.81890 -12.68304 -12.53067 -12.38321 -12.19402 -11.97164 -11.79460 -11.66097 -11.29171 -10.69707 -10.54695 -10.04755 -9.82346 -9.64206 -9.63427 -8.20681 -6.30248 -0.16580 -0.15065 1.39243 1.40538 1.50025 1.54054 1.77344 2.17753 2.40106 2.72038 3.13342 3.20739 3.28519 3.42457 3.53948 3.71569 3.74603 3.83068 4.04214 4.08057 4.15969 4.17854 4.22209 4.27708 4.41516 4.46027 4.61954 4.67938 4.72553 4.77916 4.81749 4.82025 4.90190 4.91310 4.96997 5.12365 5.17687 5.25600 5.48023 5.48255 5.65184 5.67042 5.81937 6.04777 6.22183 6.30663 6.47417 6.84815 7.09432 7.38790 8.89862 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003443 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.155535 B = 8131.509774 C = 9832.136499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.177 3.823 3 H 0.100 0.900 4 C -0.035 4.035 5 C -0.147 4.147 6 C 0.123 3.877 7 F -0.132 7.132 8 C -0.187 4.187 9 C 0.118 3.882 10 F -0.134 7.134 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.103 3.897 14 N -0.606 5.606 15 C 0.535 3.465 16 O -0.567 6.567 17 C 0.081 3.919 18 H 0.113 0.887 19 N -0.830 5.830 20 C -0.122 4.122 21 C 0.033 3.967 22 C -0.542 4.542 23 H 0.052 0.948 24 C 0.009 3.991 25 N -0.924 5.924 26 Si 0.953 3.047 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.343 0.657 40 H 0.353 0.647 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.002 0.998 44 H 0.006 0.994 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.356 3.169 18.525 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 H 0.118 0.882 4 C -0.036 4.036 5 C -0.166 4.166 6 C 0.104 3.896 7 F -0.111 7.111 8 C -0.206 4.206 9 C 0.099 3.901 10 F -0.112 7.112 11 C -0.114 4.114 12 C -0.137 4.137 13 C -0.019 4.019 14 N -0.339 5.339 15 C 0.323 3.677 16 O -0.445 6.445 17 C -0.034 4.034 18 H 0.130 0.870 19 N -0.361 5.361 20 C -0.162 4.162 21 C -0.004 4.004 22 C -0.581 4.581 23 H 0.070 0.930 24 C -0.189 4.189 25 N -0.564 5.564 26 Si 0.779 3.221 27 H -0.197 1.197 28 H -0.208 1.208 29 H -0.195 1.195 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.024 0.976 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.082 3.805 18.532 23.584 hybrid contribution 2.390 -0.894 0.087 2.553 sum -11.692 2.912 18.618 22.177 Atomic orbital electron populations 1.22107 0.91268 1.03681 1.03607 1.19898 0.96049 0.96250 0.80407 0.88239 1.19328 0.96590 0.92826 0.94822 1.21214 1.03133 1.02568 0.89711 1.17084 0.99945 0.91330 0.81290 1.91537 1.93382 1.81716 1.44426 1.21114 1.04714 0.95971 0.98823 1.17382 0.97366 0.81899 0.93478 1.91522 1.81409 1.41066 1.97204 1.19674 1.01292 0.95785 0.94642 1.20828 1.01135 1.00681 0.91106 1.21999 1.01589 0.78057 1.00235 1.48122 1.61961 1.07922 1.15886 1.20693 0.75635 0.87250 0.84084 1.90617 1.56975 1.15326 1.81554 1.21439 0.97226 0.95065 0.89662 0.86965 1.58775 1.60604 1.12188 1.04545 1.22180 0.94173 0.99202 1.00600 1.18942 0.94855 0.93844 0.92771 1.21581 1.02390 1.30357 1.03722 0.92990 1.25782 1.01660 0.96584 0.94920 1.70047 1.39426 1.37707 1.09238 0.85622 0.79975 0.78922 0.77603 1.19704 1.20845 1.19487 0.90938 0.89076 0.92177 0.81781 0.81850 0.87388 0.90695 0.87544 0.88159 0.84380 0.83144 0.91443 0.94125 0.97988 0.97563 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.24 71.98 0.67 -1.56 16 2 C 0.18 3.60 2.79 44.12 0.12 3.72 16 3 H 0.10 2.34 7.18 -2.39 -0.02 2.33 16 4 C -0.03 -0.65 5.15 -19.95 -0.10 -0.76 16 5 C -0.15 -2.37 9.19 22.40 0.21 -2.17 16 6 C 0.12 2.11 7.30 22.31 0.16 2.28 16 7 F -0.13 -2.34 17.27 44.97 0.78 -1.56 16 8 C -0.19 -3.27 10.00 22.28 0.22 -3.04 16 9 C 0.12 2.40 7.21 22.47 0.16 2.56 16 10 F -0.13 -2.97 16.40 44.97 0.74 -2.24 16 11 C -0.11 -2.31 5.77 -19.80 -0.11 -2.43 16 12 C -0.10 -2.08 5.52 29.75 0.16 -1.91 16 13 C 0.10 2.04 5.57 86.17 0.48 2.52 16 14 N -0.61 -14.60 2.58 -800.59 -2.07 -16.67 16 15 C 0.53 16.73 6.97 87.66 0.61 17.34 16 16 O -0.57 -21.12 15.78 -3.03 -0.05 -21.17 16 17 C 0.08 2.61 2.36 44.17 0.10 2.72 16 18 H 0.11 3.30 6.64 -2.39 -0.02 3.28 16 19 N -0.83 -27.72 8.94 -171.81 -1.54 -29.26 16 20 C -0.12 -4.59 4.54 30.59 0.14 -4.45 16 21 C 0.03 1.56 4.74 29.85 0.14 1.70 16 22 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 23 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 24 C 0.01 0.51 5.46 84.65 0.46 0.97 16 25 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 26 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 30 H 0.07 0.95 7.38 -2.39 -0.02 0.93 16 31 H 0.09 0.98 7.87 -2.38 -0.02 0.96 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 33 H 0.16 1.92 8.05 -2.91 -0.02 1.90 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.11 1.93 7.76 -2.39 -0.02 1.91 16 36 H 0.07 1.89 6.88 -2.39 -0.02 1.87 16 37 H 0.11 1.54 7.37 -2.38 -0.02 1.52 16 38 H 0.10 2.13 5.24 -2.39 -0.01 2.12 16 39 H 0.34 11.81 8.58 -89.69 -0.77 11.04 16 40 H 0.35 11.92 7.55 -89.70 -0.68 11.24 16 41 H 0.07 2.40 5.90 -2.39 -0.01 2.39 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.72 367.83 3.45 -61.28 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.39 Total: 28.94 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.66 Total: -11.42 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.32 Total: -98.77 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 1.51 Total: -3.80 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.72 3.45 -61.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.420 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds