Wall clock time and date at job start Tue Mar 31 2020 21:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.40328 * 2 1 4 4 C 1.50409 * 109.39569 * 240.34413 * 2 1 3 5 5 C 1.38828 * 117.78861 * 49.05697 * 4 2 1 6 6 C 1.38186 * 120.54412 * 179.58115 * 5 4 2 7 7 F 1.35107 * 120.15229 * 180.02562 * 6 5 4 8 8 C 1.38442 * 119.69262 * 0.02562 * 6 5 4 9 9 C 1.38084 * 119.77184 * 0.19142 * 8 6 5 10 10 F 1.35101 * 119.71871 * 179.97438 * 9 8 6 11 11 C 1.37650 * 122.33024 * 229.00193 * 4 2 1 12 12 C 1.50606 * 122.87159 * 0.67904 * 11 4 2 13 13 C 1.52787 * 110.86199 * 340.22322 * 12 11 4 14 14 N 1.46688 * 109.43200 * 119.89346 * 2 1 3 15 15 C 1.34781 * 121.35254 * 344.41056 * 14 2 1 16 16 O 1.21281 * 119.99800 * 354.26853 * 15 14 2 17 17 C 1.50694 * 119.99668 * 174.26465 * 15 14 2 18 18 H 1.08994 * 109.47449 * 320.00543 * 17 15 14 19 19 N 1.46901 * 109.47027 * 199.99823 * 17 15 14 20 20 C 1.53010 * 109.47045 * 80.00387 * 17 15 14 21 21 C 1.52994 * 109.46977 * 184.99556 * 20 17 15 22 22 C 1.50703 * 109.47084 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99821 * 359.72281 * 22 21 20 24 24 C 1.37876 * 119.99919 * 179.97438 * 22 21 20 25 25 N 1.31512 * 120.00108 * 359.72714 * 24 22 21 26 26 Si 1.86799 * 119.99654 * 179.72569 * 24 22 21 27 27 H 1.48499 * 109.47327 * 90.00026 * 26 24 22 28 28 H 1.48507 * 109.47007 * 210.00052 * 26 24 22 29 29 H 1.48503 * 109.47470 * 329.99952 * 26 24 22 30 30 H 1.08999 * 109.47150 * 310.23928 * 1 2 3 31 31 H 1.09003 * 109.46468 * 70.23958 * 1 2 3 32 32 H 1.08999 * 109.47426 * 190.23440 * 1 2 3 33 33 H 1.07997 * 119.72263 * 359.56075 * 5 4 2 34 34 H 1.08003 * 120.11762 * 180.20872 * 8 6 5 35 35 H 1.08999 * 109.20041 * 219.86743 * 12 11 4 36 36 H 1.08995 * 109.16155 * 100.55389 * 12 11 4 37 37 H 1.09006 * 109.77437 * 287.81997 * 13 12 11 38 38 H 1.09003 * 109.82106 * 167.04323 * 13 12 11 39 39 H 1.00896 * 111.00394 * 176.04756 * 19 17 15 40 40 H 1.00896 * 111.00158 * 300.00841 * 19 17 15 41 41 H 1.09000 * 109.46648 * 64.99502 * 20 17 15 42 42 H 1.08999 * 109.47008 * 304.99740 * 20 17 15 43 43 H 1.09004 * 109.47011 * 59.99867 * 21 20 17 44 44 H 1.08999 * 109.47401 * 299.99943 * 21 20 17 45 45 H 0.97005 * 119.99587 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0296 -0.7020 -1.2329 5 6 1.4853 -0.3301 -2.4547 6 6 1.9088 -0.9318 -3.6244 7 9 1.3742 -0.5634 -4.8092 8 6 2.8835 -1.9138 -3.5766 9 6 3.4217 -2.2870 -2.3609 10 9 4.3724 -3.2458 -2.3154 11 6 2.9938 -1.6830 -1.1818 12 6 3.6193 -2.1479 0.1069 13 6 3.4296 -1.1080 1.2101 14 7 2.0181 -0.6894 1.1993 15 6 1.2059 -0.9347 2.2465 16 8 0.0762 -0.4934 2.2541 17 6 1.7015 -1.7572 3.4079 18 1 2.3017 -2.5872 3.0354 19 7 0.5546 -2.2816 4.1613 20 6 2.5567 -0.8809 4.3254 21 6 3.1614 -1.7428 5.4354 22 6 4.0042 -0.8798 6.3387 23 1 4.1026 0.1769 6.1383 24 6 4.6538 -1.4402 7.4181 25 7 4.5336 -2.7268 7.6624 26 14 5.7047 -0.3718 8.5333 27 1 4.8671 0.1685 9.6341 28 1 6.8071 -1.1867 9.1043 29 1 6.2753 0.7521 7.7481 30 1 -0.3633 0.6638 0.7845 31 1 -0.3632 0.3475 -0.9672 32 1 -0.3634 -1.0113 0.1826 33 1 0.7245 0.4355 -2.4912 34 1 3.2220 -2.3862 -4.4869 35 1 4.6852 -2.3127 -0.0510 36 1 3.1535 -3.0845 0.4133 37 1 4.0711 -0.2474 1.0199 38 1 3.6771 -1.5457 2.1772 39 1 0.8590 -2.8892 4.9070 40 1 -0.0179 -1.5309 4.5173 41 1 1.9346 -0.1027 4.7677 42 1 3.3570 -0.4207 3.7459 43 1 3.7833 -2.5210 4.9930 44 1 2.3611 -2.2029 6.0150 45 1 4.9904 -3.1209 8.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424143607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:51 Heat of formation + Delta-G solvation = -98.707003 kcal Electronic energy + Delta-G solvation = -29757.072558 eV Core-core repulsion = 25410.220911 eV Total energy + Delta-G solvation = -4346.851647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33170 -49.31064 -41.00292 -39.17229 -36.26045 -35.79931 -33.74815 -32.86370 -32.03260 -29.95422 -29.83793 -28.16041 -26.62627 -25.18354 -23.97656 -23.61245 -21.96754 -21.46988 -20.29009 -18.89169 -18.19870 -17.72274 -17.25118 -16.54458 -16.35397 -16.32341 -15.97158 -15.68270 -15.62373 -15.35157 -14.80363 -14.55431 -14.44803 -14.21971 -14.04600 -13.88094 -13.46005 -13.23472 -13.07574 -12.73063 -12.70711 -12.48146 -12.33084 -12.02808 -11.75551 -11.72176 -11.58753 -11.41478 -11.26497 -11.04941 -10.93070 -10.68688 -10.03485 -9.78308 -9.32904 -9.29081 -8.98765 -8.90595 -8.73223 -8.47927 -8.20808 -6.12483 -4.15852 0.57929 0.59227 2.75482 2.84409 2.92848 3.24507 3.31633 3.34098 3.47431 3.98615 4.07977 4.22875 4.35884 4.45549 4.51896 4.60159 4.89820 4.97492 5.07218 5.08829 5.14477 5.20987 5.23766 5.24566 5.42669 5.48794 5.54337 5.58231 5.60057 5.66590 5.68391 5.79597 5.88071 6.01313 6.18176 6.26237 6.38859 6.45877 6.54322 6.80645 7.29880 7.46220 7.52610 7.57793 7.84066 7.85775 8.26232 8.34034 8.90114 9.49496 10.98308 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002732 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.920840 B =10245.662298 C =11099.158195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.185 3.815 3 H 0.089 0.911 4 C -0.031 4.031 5 C -0.156 4.156 6 C 0.126 3.874 7 F -0.132 7.132 8 C -0.192 4.192 9 C 0.129 3.871 10 F -0.127 7.127 11 C -0.107 4.107 12 C -0.100 4.100 13 C 0.103 3.897 14 N -0.616 5.616 15 C 0.535 3.465 16 O -0.526 6.526 17 C 0.074 3.926 18 H 0.096 0.904 19 N -0.830 5.830 20 C -0.140 4.140 21 C 0.025 3.975 22 C -0.525 4.525 23 H 0.055 0.945 24 C 0.059 3.941 25 N -0.892 5.892 26 Si 0.892 3.108 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.355 0.645 40 H 0.346 0.654 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 2.656 -21.670 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.082 3.918 3 H 0.107 0.893 4 C -0.032 4.032 5 C -0.175 4.175 6 C 0.107 3.893 7 F -0.110 7.110 8 C -0.212 4.212 9 C 0.110 3.890 10 F -0.106 7.106 11 C -0.109 4.109 12 C -0.137 4.137 13 C -0.020 4.020 14 N -0.351 5.351 15 C 0.325 3.675 16 O -0.402 6.402 17 C -0.041 4.041 18 H 0.114 0.886 19 N -0.362 5.362 20 C -0.180 4.180 21 C -0.012 4.012 22 C -0.563 4.563 23 H 0.073 0.927 24 C -0.142 4.142 25 N -0.531 5.531 26 Si 0.720 3.280 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.121 2.374 -22.238 22.740 hybrid contribution 1.370 0.791 1.017 1.881 sum -2.750 3.165 -21.220 21.631 Atomic orbital electron populations 1.22297 0.91176 1.04758 1.01745 1.19876 0.96345 0.94681 0.80935 0.89322 1.19520 0.94010 0.94795 0.94917 1.21118 1.02935 1.03115 0.90358 1.17068 0.94850 0.96197 0.81204 1.91537 1.84673 1.90412 1.44376 1.20938 1.00430 1.01258 0.98568 1.17290 0.89439 0.89186 0.93089 1.91532 1.61185 1.60694 1.97164 1.19614 0.98720 0.97900 0.94617 1.20837 1.01677 1.00030 0.91177 1.21900 0.81691 0.97935 1.00430 1.48113 1.11238 1.59707 1.16056 1.20827 0.84602 0.79492 0.82617 1.90639 1.19417 1.51041 1.79067 1.21523 0.92831 0.97205 0.92571 0.88584 1.58742 1.20190 1.24553 1.32762 1.22459 0.98358 0.99065 0.98133 1.19098 0.95590 0.94690 0.91842 1.21164 1.29370 0.94928 1.10810 0.92713 1.25005 0.96641 0.94967 0.97636 1.69945 1.43420 1.10705 1.29052 0.86595 0.80118 0.80385 0.80925 1.20623 1.21145 1.19864 0.88909 0.93093 0.91593 0.83585 0.83406 0.88745 0.89200 0.90166 0.87191 0.82976 0.84109 0.92545 0.92354 0.96364 0.96375 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.52 37.16 0.28 -1.37 16 2 C 0.19 2.02 3.47 -69.12 -0.24 1.78 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.03 -0.32 5.42 -104.76 -0.57 -0.88 16 5 C -0.16 -1.41 8.95 -39.38 -0.35 -1.76 16 6 C 0.13 1.17 7.30 -39.53 -0.29 0.89 16 7 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 8 C -0.19 -1.74 10.00 -39.56 -0.40 -2.14 16 9 C 0.13 1.30 7.21 -39.27 -0.28 1.01 16 10 F -0.13 -1.33 16.40 2.25 0.04 -1.29 16 11 C -0.11 -1.10 5.77 -104.52 -0.60 -1.71 16 12 C -0.10 -0.98 5.56 -28.04 -0.16 -1.14 16 13 C 0.10 1.11 5.71 -3.75 -0.02 1.09 16 14 N -0.62 -7.72 2.94 -166.98 -0.49 -8.21 16 15 C 0.54 8.24 6.66 -10.99 -0.07 8.16 16 16 O -0.53 -9.14 12.32 5.56 0.07 -9.07 16 17 C 0.07 1.18 2.35 -68.86 -0.16 1.02 16 18 H 0.10 1.46 7.07 -51.93 -0.37 1.10 16 19 N -0.83 -13.59 8.94 -5.65 -0.05 -13.64 16 20 C -0.14 -2.58 4.43 -26.73 -0.12 -2.70 16 21 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 22 C -0.52 -13.88 9.11 -34.44 -0.31 -14.20 16 23 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 24 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 25 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 26 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.09 1.23 6.40 -51.93 -0.33 0.90 16 31 H 0.05 0.46 6.24 -51.93 -0.32 0.13 16 32 H 0.07 0.90 7.29 -51.93 -0.38 0.53 16 33 H 0.15 1.07 6.64 -52.49 -0.35 0.72 16 34 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.09 0.81 7.76 -51.93 -0.40 0.41 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 1.28 4.80 -51.93 -0.25 1.03 16 39 H 0.35 5.86 7.55 -39.29 -0.30 5.57 16 40 H 0.35 5.71 8.58 -39.29 -0.34 5.37 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.01 6.63 -51.93 -0.34 0.67 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -29.53 362.34 -8.56 -38.09 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.82 Total: 8.75 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.52 Total: -9.97 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.20 Total: -46.52 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.53 -8.56 -38.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.613 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds