Wall clock time and date at job start Tue Mar 31 2020 21:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.40328 * 2 1 4 4 C 1.50409 * 109.39569 * 240.34413 * 2 1 3 5 5 C 1.38828 * 117.78861 * 49.05697 * 4 2 1 6 6 C 1.38186 * 120.54412 * 179.58115 * 5 4 2 7 7 F 1.35107 * 120.15229 * 180.02562 * 6 5 4 8 8 C 1.38442 * 119.69262 * 0.02562 * 6 5 4 9 9 C 1.38084 * 119.77184 * 0.19142 * 8 6 5 10 10 F 1.35101 * 119.71871 * 179.97438 * 9 8 6 11 11 C 1.37650 * 122.33024 * 229.00193 * 4 2 1 12 12 C 1.50606 * 122.87159 * 0.67904 * 11 4 2 13 13 C 1.52787 * 110.86199 * 340.22322 * 12 11 4 14 14 N 1.46688 * 109.43200 * 119.89346 * 2 1 3 15 15 C 1.34781 * 121.35254 * 344.41056 * 14 2 1 16 16 O 1.21281 * 119.99800 * 354.26853 * 15 14 2 17 17 C 1.50694 * 119.99668 * 174.26465 * 15 14 2 18 18 H 1.08994 * 109.47449 * 320.00543 * 17 15 14 19 19 N 1.46901 * 109.47027 * 199.99823 * 17 15 14 20 20 C 1.53010 * 109.47045 * 80.00387 * 17 15 14 21 21 C 1.52994 * 109.46977 * 184.99556 * 20 17 15 22 22 C 1.50703 * 109.47084 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99821 * 359.72281 * 22 21 20 24 24 C 1.37876 * 119.99919 * 179.97438 * 22 21 20 25 25 N 1.31512 * 120.00108 * 359.72714 * 24 22 21 26 26 Si 1.86799 * 119.99654 * 179.72569 * 24 22 21 27 27 H 1.48499 * 109.47327 * 90.00026 * 26 24 22 28 28 H 1.48507 * 109.47007 * 210.00052 * 26 24 22 29 29 H 1.48503 * 109.47470 * 329.99952 * 26 24 22 30 30 H 1.08999 * 109.47150 * 310.23928 * 1 2 3 31 31 H 1.09003 * 109.46468 * 70.23958 * 1 2 3 32 32 H 1.08999 * 109.47426 * 190.23440 * 1 2 3 33 33 H 1.07997 * 119.72263 * 359.56075 * 5 4 2 34 34 H 1.08003 * 120.11762 * 180.20872 * 8 6 5 35 35 H 1.08999 * 109.20041 * 219.86743 * 12 11 4 36 36 H 1.08995 * 109.16155 * 100.55389 * 12 11 4 37 37 H 1.09006 * 109.77437 * 287.81997 * 13 12 11 38 38 H 1.09003 * 109.82106 * 167.04323 * 13 12 11 39 39 H 1.00896 * 111.00394 * 176.04756 * 19 17 15 40 40 H 1.00896 * 111.00158 * 300.00841 * 19 17 15 41 41 H 1.09000 * 109.46648 * 64.99502 * 20 17 15 42 42 H 1.08999 * 109.47008 * 304.99740 * 20 17 15 43 43 H 1.09004 * 109.47011 * 59.99867 * 21 20 17 44 44 H 1.08999 * 109.47401 * 299.99943 * 21 20 17 45 45 H 0.97005 * 119.99587 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0296 -0.7020 -1.2329 5 6 1.4853 -0.3301 -2.4547 6 6 1.9088 -0.9318 -3.6244 7 9 1.3742 -0.5634 -4.8092 8 6 2.8835 -1.9138 -3.5766 9 6 3.4217 -2.2870 -2.3609 10 9 4.3724 -3.2458 -2.3154 11 6 2.9938 -1.6830 -1.1818 12 6 3.6193 -2.1479 0.1069 13 6 3.4296 -1.1080 1.2101 14 7 2.0181 -0.6894 1.1993 15 6 1.2059 -0.9347 2.2465 16 8 0.0762 -0.4934 2.2541 17 6 1.7015 -1.7572 3.4079 18 1 2.3017 -2.5872 3.0354 19 7 0.5546 -2.2816 4.1613 20 6 2.5567 -0.8809 4.3254 21 6 3.1614 -1.7428 5.4354 22 6 4.0042 -0.8798 6.3387 23 1 4.1026 0.1769 6.1383 24 6 4.6538 -1.4402 7.4181 25 7 4.5336 -2.7268 7.6624 26 14 5.7047 -0.3718 8.5333 27 1 4.8671 0.1685 9.6341 28 1 6.8071 -1.1867 9.1043 29 1 6.2753 0.7521 7.7481 30 1 -0.3633 0.6638 0.7845 31 1 -0.3632 0.3475 -0.9672 32 1 -0.3634 -1.0113 0.1826 33 1 0.7245 0.4355 -2.4912 34 1 3.2220 -2.3862 -4.4869 35 1 4.6852 -2.3127 -0.0510 36 1 3.1535 -3.0845 0.4133 37 1 4.0711 -0.2474 1.0199 38 1 3.6771 -1.5457 2.1772 39 1 0.8590 -2.8892 4.9070 40 1 -0.0179 -1.5309 4.5173 41 1 1.9346 -0.1027 4.7677 42 1 3.3570 -0.4207 3.7459 43 1 3.7833 -2.5210 4.9930 44 1 2.3611 -2.2029 6.0150 45 1 4.9904 -3.1209 8.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424143607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:51 Heat of formation + Delta-G solvation = -115.534713 kcal Electronic energy + Delta-G solvation = -29757.802262 eV Core-core repulsion = 25410.220911 eV Total energy + Delta-G solvation = -4347.581351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.08939 -50.04451 -41.98404 -40.15544 -37.35612 -37.10640 -34.99291 -34.43571 -32.92459 -31.67244 -30.63677 -29.07019 -28.10581 -26.34325 -25.27572 -24.57874 -22.83629 -22.66300 -21.65357 -20.00633 -18.98899 -18.75146 -18.41532 -18.06138 -17.31157 -17.19612 -16.89943 -16.63457 -16.45261 -16.38053 -16.27005 -15.80323 -15.47829 -15.35363 -15.13769 -14.97980 -14.59567 -14.52636 -14.21101 -13.98182 -13.73910 -13.52251 -13.43058 -13.19951 -13.14182 -12.92917 -12.67552 -12.56586 -12.46651 -12.37814 -12.22820 -12.06096 -11.75447 -11.55720 -11.27311 -10.54356 -10.32124 -10.00486 -9.77287 -9.64288 -9.54383 -8.19648 -6.29543 -0.15765 -0.14173 1.40943 1.41942 1.51870 1.57301 1.79988 2.18729 2.41308 2.72890 3.14475 3.22125 3.29868 3.44037 3.53358 3.71055 3.76688 3.84171 4.04947 4.10903 4.13491 4.20254 4.23566 4.29056 4.40271 4.45664 4.65487 4.70430 4.72352 4.78496 4.80373 4.86001 4.92574 4.98130 5.04209 5.11380 5.16276 5.31893 5.49582 5.58761 5.65967 5.67798 5.83044 6.06928 6.23005 6.34270 6.49062 6.86305 7.16417 7.39710 8.90970 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002732 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.920840 B =10245.662298 C =11099.158195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H 0.106 0.894 4 C -0.038 4.038 5 C -0.149 4.149 6 C 0.122 3.878 7 F -0.133 7.133 8 C -0.187 4.187 9 C 0.120 3.880 10 F -0.132 7.132 11 C -0.114 4.114 12 C -0.096 4.096 13 C 0.101 3.899 14 N -0.611 5.611 15 C 0.535 3.465 16 O -0.550 6.550 17 C 0.080 3.920 18 H 0.104 0.896 19 N -0.830 5.830 20 C -0.122 4.122 21 C 0.031 3.969 22 C -0.542 4.542 23 H 0.056 0.944 24 C 0.006 3.994 25 N -0.927 5.927 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.264 1.264 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.352 0.648 40 H 0.345 0.655 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 3.831 -23.176 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.081 3.919 3 H 0.124 0.876 4 C -0.039 4.039 5 C -0.168 4.168 6 C 0.103 3.897 7 F -0.111 7.111 8 C -0.206 4.206 9 C 0.101 3.899 10 F -0.110 7.110 11 C -0.115 4.115 12 C -0.134 4.134 13 C -0.022 4.022 14 N -0.345 5.345 15 C 0.323 3.677 16 O -0.427 6.427 17 C -0.035 4.035 18 H 0.122 0.878 19 N -0.362 5.362 20 C -0.162 4.162 21 C -0.006 4.006 22 C -0.580 4.580 23 H 0.074 0.926 24 C -0.192 4.192 25 N -0.567 5.567 26 Si 0.781 3.219 27 H -0.203 1.203 28 H -0.209 1.209 29 H -0.188 1.188 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.452 3.558 -23.775 24.287 hybrid contribution 1.156 0.405 1.418 1.873 sum -2.296 3.964 -22.358 22.822 Atomic orbital electron populations 1.22157 0.91654 1.02775 1.02566 1.20009 0.95954 0.95484 0.80472 0.87606 1.19410 0.94461 0.95183 0.94827 1.21261 1.02719 1.03022 0.89753 1.17107 0.95016 0.96379 0.81245 1.91540 1.84702 1.90435 1.44436 1.21118 0.99803 1.00787 0.98905 1.17330 0.89792 0.89464 0.93346 1.91521 1.61408 1.60918 1.97195 1.19684 0.98944 0.98100 0.94791 1.20799 1.02499 0.99303 0.90758 1.22026 0.80829 0.98940 1.00364 1.48107 1.11593 1.58934 1.15827 1.20583 0.84575 0.79406 0.83106 1.90645 1.20388 1.51958 1.79732 1.21439 0.92373 0.97149 0.92562 0.87827 1.58755 1.20293 1.24474 1.32659 1.22190 0.98622 0.98188 0.97167 1.18954 0.94551 0.94492 0.92591 1.21615 1.29562 0.95392 1.11402 0.92602 1.25832 0.98002 0.96149 0.99242 1.70059 1.44546 1.12310 1.29768 0.85585 0.78429 0.78880 0.78991 1.20296 1.20858 1.18818 0.90790 0.90333 0.94075 0.81797 0.81787 0.87420 0.89855 0.88344 0.88207 0.83295 0.84231 0.93622 0.91158 0.97882 0.98120 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 7.52 71.98 0.54 -2.40 16 2 C 0.18 3.68 3.47 44.12 0.15 3.83 16 3 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.04 -0.68 5.42 -19.95 -0.11 -0.79 16 5 C -0.15 -2.29 8.95 22.40 0.20 -2.09 16 6 C 0.12 1.97 7.30 22.31 0.16 2.14 16 7 F -0.13 -2.24 17.27 44.97 0.78 -1.46 16 8 C -0.19 -2.97 10.00 22.28 0.22 -2.75 16 9 C 0.12 2.19 7.21 22.47 0.16 2.35 16 10 F -0.13 -2.56 16.40 44.97 0.74 -1.82 16 11 C -0.11 -2.14 5.77 -19.80 -0.11 -2.26 16 12 C -0.10 -1.76 5.56 29.75 0.17 -1.59 16 13 C 0.10 2.02 5.71 86.17 0.49 2.51 16 14 N -0.61 -14.59 2.94 -800.60 -2.35 -16.94 16 15 C 0.53 16.22 6.66 87.65 0.58 16.81 16 16 O -0.55 -19.06 12.32 -3.03 -0.04 -19.10 16 17 C 0.08 2.55 2.35 44.17 0.10 2.66 16 18 H 0.10 3.15 7.07 -2.39 -0.02 3.13 16 19 N -0.83 -27.58 8.94 -171.80 -1.54 -29.11 16 20 C -0.12 -4.47 4.43 30.60 0.14 -4.34 16 21 C 0.03 1.47 4.74 29.85 0.14 1.61 16 22 C -0.54 -28.74 9.11 25.60 0.23 -28.51 16 23 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 24 C 0.01 0.34 5.46 84.65 0.46 0.80 16 25 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 26 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 29 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 30 H 0.07 1.92 6.40 -2.39 -0.02 1.91 16 31 H 0.08 1.23 6.24 -2.39 -0.01 1.22 16 32 H 0.04 1.10 7.29 -2.39 -0.02 1.08 16 33 H 0.16 1.87 6.64 -2.91 -0.02 1.85 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.11 1.68 7.76 -2.39 -0.02 1.66 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.10 2.23 4.80 -2.39 -0.01 2.22 16 39 H 0.35 11.95 7.55 -89.70 -0.68 11.27 16 40 H 0.34 11.59 8.58 -89.70 -0.77 10.82 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.39 6.63 -2.39 -0.02 2.38 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 45 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -62.76 362.34 3.05 -59.70 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.39 Total: 29.36 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.54 Total: -12.02 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.60 Total: -99.11 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.10 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 1.51 Total: -3.28 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -62.76 3.05 -59.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.832 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds