Wall clock time and date at job start Tue Mar 31 2020 21:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.43345 * 2 1 4 4 C 1.50812 * 109.39897 * 119.88856 * 2 1 3 5 5 C 1.38829 * 117.77615 * 289.04640 * 4 2 1 6 6 C 1.38189 * 120.54727 * 179.61283 * 5 4 2 7 7 F 1.35103 * 120.15419 * 179.97438 * 6 5 4 8 8 C 1.38456 * 119.69144 * 359.95062 * 6 5 4 9 9 C 1.38083 * 119.76981 * 0.19384 * 8 6 5 10 10 F 1.35097 * 119.71752 * 180.02562 * 9 8 6 11 11 C 1.37653 * 122.35012 * 108.97273 * 4 2 1 12 12 C 1.50614 * 122.86583 * 0.84704 * 11 4 2 13 13 C 1.53326 * 110.81997 * 340.04202 * 12 11 4 14 14 N 1.46680 * 109.43349 * 240.09190 * 2 1 3 15 15 C 1.34777 * 121.34422 * 104.25307 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27403 * 15 14 2 18 18 H 1.09003 * 109.46824 * 319.71785 * 17 15 14 19 19 N 1.46900 * 109.46704 * 199.72391 * 17 15 14 20 20 C 1.53002 * 109.47121 * 79.72099 * 17 15 14 21 21 C 1.52996 * 109.46946 * 185.00076 * 20 17 15 22 22 C 1.50694 * 109.47332 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99886 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00223 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99937 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99885 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47295 * 90.00588 * 26 24 22 28 28 H 1.48504 * 109.47281 * 210.00215 * 26 24 22 29 29 H 1.48502 * 109.47239 * 330.00464 * 26 24 22 30 30 H 1.09005 * 109.47332 * 179.91021 * 1 2 3 31 31 H 1.08999 * 109.47146 * 299.91044 * 1 2 3 32 32 H 1.09000 * 109.47386 * 59.91269 * 1 2 3 33 33 H 1.07995 * 119.71870 * 359.58986 * 5 4 2 34 34 H 1.08002 * 120.11402 * 180.17659 * 8 6 5 35 35 H 1.09002 * 109.19959 * 100.51934 * 12 11 4 36 36 H 1.09003 * 109.19949 * 219.85736 * 12 11 4 37 37 H 1.08999 * 109.91319 * 288.16673 * 13 12 11 38 38 H 1.09001 * 109.91966 * 167.17864 * 13 12 11 39 39 H 1.00907 * 110.99710 * 176.04704 * 19 17 15 40 40 H 1.00898 * 110.99811 * 299.99578 * 19 17 15 41 41 H 1.08996 * 109.46933 * 304.99916 * 20 17 15 42 42 H 1.08998 * 109.47170 * 65.00270 * 20 17 15 43 43 H 1.09000 * 109.47119 * 300.00211 * 21 20 17 44 44 H 1.09002 * 109.47419 * 59.99484 * 21 20 17 45 45 H 0.97004 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0280 0.0000 4 6 2.0309 -0.7089 1.2333 5 6 1.8677 -0.0726 2.4564 6 6 2.2984 -0.6738 3.6238 7 9 2.1361 -0.0472 4.8097 8 6 2.8966 -1.9214 3.5724 9 6 3.0618 -2.5530 2.3557 10 9 3.6452 -3.7705 2.3069 11 6 2.6322 -1.9459 1.1788 12 6 2.8585 -2.6885 -0.1119 13 6 1.9335 -2.1596 -1.2144 14 7 2.0180 -0.6897 -1.1990 15 6 2.5185 -0.0053 -2.2466 16 8 2.5717 1.2059 -2.2101 17 6 3.0059 -0.7445 -3.4661 18 1 3.5414 -1.6422 -3.1569 19 7 3.9074 0.1226 -4.2364 20 6 1.8101 -1.1380 -4.3357 21 6 2.2921 -1.9949 -5.5079 22 6 1.1143 -2.3831 -6.3642 23 1 0.1213 -2.0513 -6.0990 24 6 1.3045 -3.1608 -7.4866 25 7 2.5137 -3.5644 -7.8098 26 14 -0.1555 -3.6413 -8.5483 27 1 -0.3625 -2.6134 -9.5998 28 1 0.1079 -4.9561 -9.1865 29 1 -1.3725 -3.7364 -7.7027 30 1 -0.3634 -1.0277 -0.0016 31 1 -0.3633 0.5124 0.8908 32 1 -0.3634 0.5152 -0.8892 33 1 1.4006 0.9003 2.4957 34 1 3.2332 -2.3987 4.4809 35 1 3.8962 -2.5626 -0.4206 36 1 2.6570 -3.7483 0.0443 37 1 0.9076 -2.4721 -1.0199 38 1 2.2575 -2.5376 -2.1840 39 1 4.2984 -0.3716 -5.0246 40 1 3.4341 0.9622 -4.5348 41 1 1.0980 -1.7071 -3.7382 42 1 1.3270 -0.2386 -4.7177 43 1 3.0042 -1.4258 -6.1054 44 1 2.7753 -2.8943 -5.1261 45 1 2.6474 -4.1119 -8.5993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424143608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:54 Heat of formation + Delta-G solvation = -111.664708 kcal Electronic energy + Delta-G solvation = -29658.955295 eV Core-core repulsion = 25311.541760 eV Total energy + Delta-G solvation = -4347.413535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.34183 -49.32143 -40.89109 -39.14767 -36.40621 -35.64096 -33.62489 -32.87190 -32.02720 -29.97650 -29.90277 -28.41615 -26.69139 -24.84941 -24.11696 -23.59357 -22.39213 -21.30074 -20.23018 -18.78295 -18.15731 -17.86879 -17.24988 -16.55637 -16.34084 -16.27959 -15.97913 -15.63380 -15.47787 -15.19222 -14.87053 -14.65462 -14.50115 -14.36797 -14.19776 -13.67752 -13.42104 -13.28644 -13.11453 -12.92836 -12.61083 -12.49231 -12.30861 -12.11891 -12.00051 -11.77587 -11.65413 -11.36765 -11.17273 -11.08114 -10.95543 -10.71505 -10.04217 -9.94722 -9.32870 -9.28336 -9.24832 -8.92995 -8.77913 -8.47918 -8.24143 -6.12420 -4.15736 0.56856 0.58439 2.78588 2.80739 2.91845 3.24504 3.31639 3.34069 3.45840 3.97064 4.05211 4.21868 4.35924 4.45249 4.49688 4.62459 4.86794 4.95521 5.01194 5.04668 5.14609 5.17712 5.22830 5.24097 5.41291 5.45356 5.47785 5.54073 5.57037 5.63427 5.66554 5.67407 5.77943 5.94631 5.98124 6.21134 6.37823 6.38990 6.48054 6.80707 7.28377 7.46177 7.52227 7.57854 7.84117 7.85786 8.26175 8.30917 8.90185 9.49561 10.98399 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002673 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.135724 B =10473.453453 C =10959.920855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 H 0.114 0.886 4 C -0.028 4.028 5 C -0.156 4.156 6 C 0.127 3.873 7 F -0.131 7.131 8 C -0.192 4.192 9 C 0.130 3.870 10 F -0.127 7.127 11 C -0.106 4.106 12 C -0.099 4.099 13 C 0.104 3.896 14 N -0.614 5.614 15 C 0.535 3.465 16 O -0.534 6.534 17 C 0.075 3.925 18 H 0.098 0.902 19 N -0.831 5.831 20 C -0.139 4.139 21 C 0.025 3.975 22 C -0.524 4.524 23 H 0.055 0.945 24 C 0.059 3.941 25 N -0.892 5.892 26 Si 0.892 3.108 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.355 0.645 40 H 0.346 0.654 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 2.839 22.062 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.075 3.925 3 H 0.132 0.868 4 C -0.029 4.029 5 C -0.175 4.175 6 C 0.107 3.893 7 F -0.110 7.110 8 C -0.212 4.212 9 C 0.110 3.890 10 F -0.106 7.106 11 C -0.108 4.108 12 C -0.137 4.137 13 C -0.019 4.019 14 N -0.348 5.348 15 C 0.324 3.676 16 O -0.409 6.409 17 C -0.040 4.040 18 H 0.115 0.885 19 N -0.363 5.363 20 C -0.179 4.179 21 C -0.012 4.012 22 C -0.562 4.562 23 H 0.073 0.927 24 C -0.142 4.142 25 N -0.531 5.531 26 Si 0.720 3.280 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.168 3.418 22.619 22.876 hybrid contribution -1.347 -0.767 -0.995 1.842 sum -1.515 2.651 21.624 21.838 Atomic orbital electron populations 1.22155 0.93286 1.03019 1.03072 1.19863 0.94530 0.97102 0.80975 0.86805 1.19496 0.95778 0.92883 0.94724 1.21063 1.03891 1.02110 0.90427 1.17058 0.99761 0.91265 0.81179 1.91537 1.93444 1.81734 1.44266 1.20940 1.05656 0.96018 0.98560 1.17283 0.96883 0.81734 0.93087 1.91530 1.81394 1.40501 1.97149 1.19608 1.01124 0.95410 0.94630 1.20927 1.01847 0.99745 0.91159 1.21984 1.00235 0.79412 1.00298 1.48121 1.63394 1.07112 1.16181 1.20906 0.75502 0.87759 0.83447 1.90633 1.55189 1.14159 1.80958 1.21508 0.95293 0.95530 0.91674 0.88454 1.58751 1.37675 1.09436 1.30434 1.22429 0.95858 1.01071 0.98514 1.19096 0.96789 0.94091 0.91229 1.21159 0.93777 1.32065 1.09246 0.92719 1.25004 0.95741 0.95915 0.97587 1.69944 1.20612 1.36228 1.26339 0.86594 0.82851 0.77941 0.80636 1.20626 1.21144 1.19868 0.91826 0.91229 0.91094 0.83776 0.83393 0.89165 0.88787 0.90110 0.87345 0.82944 0.84101 0.92355 0.92583 0.96395 0.96325 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.25 37.16 0.34 -1.11 16 2 C 0.18 1.96 2.80 -68.93 -0.19 1.77 16 3 H 0.11 1.38 7.17 -51.93 -0.37 1.01 16 4 C -0.03 -0.28 5.16 -104.56 -0.54 -0.82 16 5 C -0.16 -1.38 9.23 -39.38 -0.36 -1.74 16 6 C 0.13 1.16 7.30 -39.52 -0.29 0.87 16 7 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 8 C -0.19 -1.71 10.00 -39.56 -0.40 -2.11 16 9 C 0.13 1.27 7.21 -39.27 -0.28 0.99 16 10 F -0.13 -1.31 16.40 2.25 0.04 -1.27 16 11 C -0.11 -1.08 5.77 -104.51 -0.60 -1.68 16 12 C -0.10 -0.96 5.58 -27.76 -0.15 -1.11 16 13 C 0.10 1.11 5.64 -3.47 -0.02 1.09 16 14 N -0.61 -7.73 2.57 -166.44 -0.43 -8.16 16 15 C 0.53 8.47 6.97 -10.98 -0.08 8.39 16 16 O -0.53 -9.95 15.78 5.55 0.09 -9.86 16 17 C 0.07 1.21 2.35 -68.86 -0.16 1.05 16 18 H 0.10 1.48 6.81 -51.93 -0.35 1.12 16 19 N -0.83 -13.82 8.94 -5.65 -0.05 -13.87 16 20 C -0.14 -2.57 4.48 -26.73 -0.12 -2.69 16 21 C 0.03 0.58 4.74 -27.89 -0.13 0.45 16 22 C -0.52 -13.89 9.11 -34.44 -0.31 -14.20 16 23 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 25 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 26 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.06 0.57 7.34 -51.93 -0.38 0.18 16 31 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.14 1.02 8.05 -52.49 -0.42 0.60 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.79 7.76 -51.93 -0.40 0.39 16 37 H 0.08 0.77 7.33 -51.93 -0.38 0.39 16 38 H 0.11 1.24 5.02 -51.93 -0.26 0.98 16 39 H 0.36 5.91 7.55 -39.29 -0.30 5.61 16 40 H 0.35 5.83 8.58 -39.29 -0.34 5.49 16 41 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -30.26 370.24 -8.41 -38.67 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.99 Total: 8.34 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.40 Total: -9.34 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.26 Total: -46.69 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.26 -8.41 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.992 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds