Wall clock time and date at job start Tue Mar 31 2020 21:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.43345 * 2 1 4 4 C 1.50812 * 109.39897 * 119.88856 * 2 1 3 5 5 C 1.38829 * 117.77615 * 289.04640 * 4 2 1 6 6 C 1.38189 * 120.54727 * 179.61283 * 5 4 2 7 7 F 1.35103 * 120.15419 * 179.97438 * 6 5 4 8 8 C 1.38456 * 119.69144 * 359.95062 * 6 5 4 9 9 C 1.38083 * 119.76981 * 0.19384 * 8 6 5 10 10 F 1.35097 * 119.71752 * 180.02562 * 9 8 6 11 11 C 1.37653 * 122.35012 * 108.97273 * 4 2 1 12 12 C 1.50614 * 122.86583 * 0.84704 * 11 4 2 13 13 C 1.53326 * 110.81997 * 340.04202 * 12 11 4 14 14 N 1.46680 * 109.43349 * 240.09190 * 2 1 3 15 15 C 1.34777 * 121.34422 * 104.25307 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27403 * 15 14 2 18 18 H 1.09003 * 109.46824 * 319.71785 * 17 15 14 19 19 N 1.46900 * 109.46704 * 199.72391 * 17 15 14 20 20 C 1.53002 * 109.47121 * 79.72099 * 17 15 14 21 21 C 1.52996 * 109.46946 * 185.00076 * 20 17 15 22 22 C 1.50694 * 109.47332 * 179.97438 * 21 20 17 23 23 H 1.08000 * 119.99886 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00223 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99937 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99885 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47295 * 90.00588 * 26 24 22 28 28 H 1.48504 * 109.47281 * 210.00215 * 26 24 22 29 29 H 1.48502 * 109.47239 * 330.00464 * 26 24 22 30 30 H 1.09005 * 109.47332 * 179.91021 * 1 2 3 31 31 H 1.08999 * 109.47146 * 299.91044 * 1 2 3 32 32 H 1.09000 * 109.47386 * 59.91269 * 1 2 3 33 33 H 1.07995 * 119.71870 * 359.58986 * 5 4 2 34 34 H 1.08002 * 120.11402 * 180.17659 * 8 6 5 35 35 H 1.09002 * 109.19959 * 100.51934 * 12 11 4 36 36 H 1.09003 * 109.19949 * 219.85736 * 12 11 4 37 37 H 1.08999 * 109.91319 * 288.16673 * 13 12 11 38 38 H 1.09001 * 109.91966 * 167.17864 * 13 12 11 39 39 H 1.00907 * 110.99710 * 176.04704 * 19 17 15 40 40 H 1.00898 * 110.99811 * 299.99578 * 19 17 15 41 41 H 1.08996 * 109.46933 * 304.99916 * 20 17 15 42 42 H 1.08998 * 109.47170 * 65.00270 * 20 17 15 43 43 H 1.09000 * 109.47119 * 300.00211 * 21 20 17 44 44 H 1.09002 * 109.47419 * 59.99484 * 21 20 17 45 45 H 0.97004 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0280 0.0000 4 6 2.0309 -0.7089 1.2333 5 6 1.8677 -0.0726 2.4564 6 6 2.2984 -0.6738 3.6238 7 9 2.1361 -0.0472 4.8097 8 6 2.8966 -1.9214 3.5724 9 6 3.0618 -2.5530 2.3557 10 9 3.6452 -3.7705 2.3069 11 6 2.6322 -1.9459 1.1788 12 6 2.8585 -2.6885 -0.1119 13 6 1.9335 -2.1596 -1.2144 14 7 2.0180 -0.6897 -1.1990 15 6 2.5185 -0.0053 -2.2466 16 8 2.5717 1.2059 -2.2101 17 6 3.0059 -0.7445 -3.4661 18 1 3.5414 -1.6422 -3.1569 19 7 3.9074 0.1226 -4.2364 20 6 1.8101 -1.1380 -4.3357 21 6 2.2921 -1.9949 -5.5079 22 6 1.1143 -2.3831 -6.3642 23 1 0.1213 -2.0513 -6.0990 24 6 1.3045 -3.1608 -7.4866 25 7 2.5137 -3.5644 -7.8098 26 14 -0.1555 -3.6413 -8.5483 27 1 -0.3625 -2.6134 -9.5998 28 1 0.1079 -4.9561 -9.1865 29 1 -1.3725 -3.7364 -7.7027 30 1 -0.3634 -1.0277 -0.0016 31 1 -0.3633 0.5124 0.8908 32 1 -0.3634 0.5152 -0.8892 33 1 1.4006 0.9003 2.4957 34 1 3.2332 -2.3987 4.4809 35 1 3.8962 -2.5626 -0.4206 36 1 2.6570 -3.7483 0.0443 37 1 0.9076 -2.4721 -1.0199 38 1 2.2575 -2.5376 -2.1840 39 1 4.2984 -0.3716 -5.0246 40 1 3.4341 0.9622 -4.5348 41 1 1.0980 -1.7071 -3.7382 42 1 1.3270 -0.2386 -4.7177 43 1 3.0042 -1.4258 -6.1054 44 1 2.7753 -2.8943 -5.1261 45 1 2.6474 -4.1119 -8.5993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424143608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:53 Heat of formation + Delta-G solvation = -128.889123 kcal Electronic energy + Delta-G solvation = -29659.702202 eV Core-core repulsion = 25311.541760 eV Total energy + Delta-G solvation = -4348.160442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.08904 -50.04775 -41.86782 -40.17525 -37.41114 -37.10115 -34.90093 -34.34672 -32.92857 -31.67614 -30.69172 -29.27414 -28.19735 -26.11239 -25.18314 -24.64820 -23.15930 -22.66713 -21.53532 -19.82837 -19.06765 -18.86255 -18.42233 -18.05337 -17.28866 -17.08947 -16.89505 -16.57673 -16.38252 -16.30608 -16.20701 -15.88803 -15.57452 -15.48093 -15.24460 -14.90422 -14.66116 -14.37960 -14.24777 -13.95608 -13.91521 -13.43016 -13.40464 -13.24073 -13.02705 -12.91857 -12.79716 -12.68631 -12.49983 -12.39788 -12.19216 -11.97172 -11.78040 -11.68042 -11.27763 -10.69483 -10.53973 -10.04413 -9.82548 -9.65392 -9.61634 -8.19590 -6.29376 -0.15932 -0.14370 1.40970 1.42001 1.51625 1.54403 1.76925 2.18534 2.41372 2.71812 3.14576 3.20697 3.28735 3.42986 3.52987 3.70902 3.75133 3.83717 4.04568 4.09184 4.14591 4.16899 4.22513 4.28996 4.40997 4.45955 4.66078 4.67662 4.72506 4.75817 4.81122 4.82799 4.90154 4.90774 4.98271 5.10344 5.17236 5.23426 5.47206 5.49699 5.65797 5.67686 5.82928 6.04946 6.22990 6.30764 6.47620 6.86274 7.09259 7.39802 8.91064 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002673 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.135724 B =10473.453453 C =10959.920855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.101 0.899 4 C -0.035 4.035 5 C -0.148 4.148 6 C 0.123 3.877 7 F -0.133 7.133 8 C -0.186 4.186 9 C 0.121 3.879 10 F -0.131 7.131 11 C -0.113 4.113 12 C -0.095 4.095 13 C 0.100 3.900 14 N -0.606 5.606 15 C 0.535 3.465 16 O -0.567 6.567 17 C 0.081 3.919 18 H 0.109 0.891 19 N -0.831 5.831 20 C -0.120 4.120 21 C 0.032 3.968 22 C -0.542 4.542 23 H 0.055 0.945 24 C 0.007 3.993 25 N -0.926 5.926 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.264 1.264 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.353 0.647 40 H 0.344 0.656 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.001 0.999 44 H 0.004 0.996 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 2.437 23.539 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 H 0.119 0.881 4 C -0.036 4.036 5 C -0.168 4.168 6 C 0.103 3.897 7 F -0.111 7.111 8 C -0.205 4.205 9 C 0.102 3.898 10 F -0.110 7.110 11 C -0.114 4.114 12 C -0.133 4.133 13 C -0.022 4.022 14 N -0.339 5.339 15 C 0.324 3.676 16 O -0.445 6.445 17 C -0.034 4.034 18 H 0.126 0.874 19 N -0.363 5.363 20 C -0.160 4.160 21 C -0.006 4.006 22 C -0.580 4.580 23 H 0.074 0.926 24 C -0.192 4.192 25 N -0.566 5.566 26 Si 0.781 3.219 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.188 1.188 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.392 2.996 24.131 24.356 hybrid contribution -0.947 -0.648 -1.385 1.799 sum -2.339 2.347 22.746 22.986 Atomic orbital electron populations 1.22127 0.91809 1.03550 1.03506 1.19958 0.95635 0.96362 0.80553 0.88104 1.19378 0.96620 0.92985 0.94575 1.21209 1.03120 1.02589 0.89840 1.17095 1.00002 0.91409 0.81188 1.91539 1.93481 1.81770 1.44333 1.21122 1.04695 0.95816 0.98917 1.17308 0.97425 0.81793 0.93301 1.91521 1.81546 1.40733 1.97177 1.19679 1.01297 0.95599 0.94861 1.20896 1.01215 1.00549 0.90640 1.22137 1.01560 0.78078 1.00439 1.48125 1.61958 1.07995 1.15849 1.20699 0.75673 0.87279 0.83996 1.90617 1.56803 1.15343 1.81732 1.21430 0.94293 0.96012 0.91659 0.87352 1.58767 1.37711 1.09424 1.30379 1.22154 0.96809 0.99708 0.97327 1.18953 0.95462 0.93920 0.92232 1.21605 0.94738 1.31808 1.09819 0.92643 1.25825 0.98302 0.96047 0.99015 1.70056 1.22551 1.37062 1.26974 0.85587 0.79860 0.77550 0.78906 1.20323 1.20830 1.18836 0.91182 0.88973 0.92507 0.82038 0.81742 0.89674 0.87322 0.88416 0.88118 0.83160 0.84293 0.91187 0.93735 0.98104 0.97721 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.25 71.98 0.67 -1.87 16 2 C 0.18 3.66 2.80 44.25 0.12 3.79 16 3 H 0.10 2.37 7.17 -2.38 -0.02 2.36 16 4 C -0.03 -0.62 5.16 -19.83 -0.10 -0.73 16 5 C -0.15 -2.30 9.23 22.40 0.21 -2.09 16 6 C 0.12 1.97 7.30 22.31 0.16 2.13 16 7 F -0.13 -2.23 17.27 44.97 0.78 -1.46 16 8 C -0.19 -2.91 10.00 22.28 0.22 -2.69 16 9 C 0.12 2.16 7.21 22.47 0.16 2.32 16 10 F -0.13 -2.48 16.40 44.97 0.74 -1.74 16 11 C -0.11 -2.10 5.77 -19.79 -0.11 -2.21 16 12 C -0.10 -1.71 5.58 29.93 0.17 -1.54 16 13 C 0.10 1.99 5.64 86.35 0.49 2.48 16 14 N -0.61 -14.70 2.57 -798.87 -2.05 -16.75 16 15 C 0.53 16.77 6.97 87.66 0.61 17.38 16 16 O -0.57 -21.16 15.78 -3.04 -0.05 -21.21 16 17 C 0.08 2.62 2.35 44.17 0.10 2.72 16 18 H 0.11 3.25 6.81 -2.39 -0.02 3.24 16 19 N -0.83 -27.98 8.94 -171.79 -1.54 -29.51 16 20 C -0.12 -4.44 4.48 30.59 0.14 -4.30 16 21 C 0.03 1.48 4.74 29.84 0.14 1.62 16 22 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 23 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 24 C 0.01 0.36 5.46 84.65 0.46 0.82 16 25 N -0.93 -53.20 13.29 21.45 0.28 -52.91 16 26 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.07 1.08 7.34 -2.38 -0.02 1.06 16 31 H 0.09 1.12 7.90 -2.39 -0.02 1.10 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.16 1.87 8.05 -2.91 -0.02 1.85 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.63 7.76 -2.39 -0.02 1.61 16 37 H 0.10 1.65 7.33 -2.39 -0.02 1.63 16 38 H 0.10 2.19 5.02 -2.39 -0.01 2.18 16 39 H 0.35 12.02 7.55 -89.69 -0.68 11.34 16 40 H 0.34 11.81 8.58 -89.70 -0.77 11.04 16 41 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.00 0.03 6.87 -2.39 -0.02 0.02 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -64.06 370.24 3.46 -60.59 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.39 Total: 29.25 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.67 Total: -10.66 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -3.30 Total: -99.18 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 1.51 Total: -3.20 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.06 3.46 -60.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.297 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds