Wall clock time and date at job start Tue Mar 31 2020 21:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47310 * 2 1 4 4 C 1.50703 * 109.46935 * 240.00377 * 2 1 3 5 5 H 1.08001 * 120.00228 * 274.99826 * 4 2 1 6 6 C 1.37875 * 120.00060 * 95.00008 * 4 2 1 7 7 N 1.31516 * 119.99898 * 184.91792 * 6 4 2 8 8 Si 1.86795 * 120.00258 * 4.91117 * 6 4 2 9 9 H 1.48501 * 109.47006 * 84.83589 * 8 6 4 10 10 H 1.48497 * 109.47766 * 204.83456 * 8 6 4 11 11 H 1.48503 * 109.47049 * 324.83791 * 8 6 4 12 12 O 1.45194 * 109.47300 * 120.00656 * 2 1 3 13 13 C 1.34237 * 116.99709 * 270.00091 * 12 2 1 14 14 O 1.20824 * 119.99831 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99781 * 180.02562 * 13 12 2 16 16 N 1.46499 * 109.46749 * 179.97438 * 15 13 12 17 17 C 1.33867 * 124.19699 * 270.13222 * 16 15 13 18 18 O 1.21541 * 123.78390 * 0.09325 * 17 16 15 19 19 N 1.34671 * 112.42375 * 180.29516 * 17 16 15 20 20 C 1.46842 * 106.42732 * 359.75670 * 19 17 16 21 21 C 1.52469 * 110.52713 * 241.48844 * 20 19 17 22 22 C 1.53088 * 109.56635 * 295.78892 * 21 20 19 23 23 C 1.53004 * 109.41900 * 300.84649 * 22 21 20 24 24 C 1.53010 * 109.52279 * 60.45209 * 23 22 21 25 25 C 1.52470 * 110.53011 * 118.52940 * 20 19 17 26 26 H 1.08999 * 109.45985 * 184.24008 * 25 20 19 27 27 C 1.53001 * 109.45417 * 304.18632 * 25 20 19 28 28 C 1.34918 * 124.19565 * 89.99701 * 16 15 13 29 29 O 1.21226 * 127.25570 * 0.02562 * 28 16 15 30 30 H 1.08994 * 109.47216 * 175.02961 * 1 2 3 31 31 H 1.08998 * 109.46813 * 295.03409 * 1 2 3 32 32 H 1.09009 * 109.46724 * 55.02940 * 1 2 3 33 33 H 0.97002 * 119.99895 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47294 * 59.99251 * 15 13 12 35 35 H 1.08999 * 109.46993 * 299.99329 * 15 13 12 36 36 H 0.97006 * 126.78879 * 179.75528 * 19 17 16 37 37 H 1.09008 * 109.45443 * 55.81651 * 21 20 19 38 38 H 1.09000 * 109.46178 * 175.75905 * 21 20 19 39 39 H 1.09001 * 109.47952 * 60.82895 * 22 21 20 40 40 H 1.09005 * 109.47704 * 180.86075 * 22 21 20 41 41 H 1.09002 * 109.46034 * 180.47343 * 23 22 21 42 42 H 1.09001 * 109.45872 * 300.43893 * 23 22 21 43 43 H 1.09003 * 109.47717 * 59.53065 * 24 23 22 44 44 H 1.08996 * 109.47596 * 179.56012 * 24 23 22 45 45 H 1.08994 * 109.47919 * 59.99639 * 27 25 20 46 46 H 1.08998 * 109.47012 * 179.97438 * 27 25 20 47 47 H 1.09004 * 109.46814 * 299.99337 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3134 1.8791 -2.3175 9 1 3.5990 2.3949 -1.7823 10 1 2.1056 2.3993 -3.6928 11 1 1.1985 2.3275 -1.4450 12 8 2.0140 -0.6846 1.1854 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7194 -0.5773 3.5491 16 7 2.8583 0.4436 4.5906 17 6 3.9725 1.1543 4.8037 18 8 4.9901 1.0275 4.1513 19 7 3.8407 2.0222 5.8249 20 6 2.4731 1.8598 6.3341 21 6 1.6907 3.1604 6.1892 22 6 2.3268 4.2418 7.0664 23 6 2.3195 3.7825 8.5258 24 6 3.1277 2.4901 8.6591 25 6 2.4947 1.4018 7.7882 26 1 1.4752 1.2145 8.1252 27 6 3.3142 0.1151 7.9050 28 6 1.8782 0.7860 5.4522 29 8 0.7583 0.3255 5.5105 30 1 -0.3633 -1.0237 -0.0890 31 1 -0.3633 0.4349 0.9311 32 1 -0.3633 0.5891 -0.8422 33 1 2.9368 -0.1047 -4.2555 34 1 3.6884 -1.0403 3.3630 35 1 2.0105 -1.3375 3.8772 36 1 4.5159 2.6339 6.1583 37 1 1.7087 3.4808 5.1475 38 1 0.6587 3.0002 6.5016 39 1 3.3540 4.4133 6.7444 40 1 1.7573 5.1667 6.9735 41 1 2.7647 4.5556 9.1521 42 1 1.2928 3.6033 8.8450 43 1 4.1524 2.6669 8.3323 44 1 3.1285 2.1678 9.7004 45 1 4.3337 0.3015 7.5675 46 1 3.3303 -0.2123 8.9446 47 1 2.8627 -0.6606 7.2864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:19 Heat of formation + Delta-G solvation = -141.281003 kcal Electronic energy + Delta-G solvation = -31292.682063 eV Core-core repulsion = 27055.071784 eV Total energy + Delta-G solvation = -4237.610279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.05939 -39.79729 -38.94090 -38.48920 -36.12688 -35.72284 -34.22219 -33.15759 -33.10099 -30.75947 -30.38908 -28.85388 -26.95747 -25.42307 -24.35930 -23.08701 -22.47551 -21.77338 -20.61758 -20.16604 -19.58115 -18.12987 -17.85965 -16.95734 -16.84177 -16.43506 -15.87990 -15.80519 -15.53290 -15.26579 -15.18006 -14.94377 -14.65336 -14.36330 -14.10458 -13.59686 -13.46769 -13.25344 -12.97692 -12.81299 -12.59319 -12.42952 -12.37400 -12.25578 -12.09259 -11.63518 -11.47808 -11.33913 -11.14997 -11.06255 -11.01076 -10.90494 -10.80901 -10.73299 -10.52891 -10.12721 -9.97585 -9.69521 -9.60180 -9.46521 -9.15906 -8.73404 -6.29175 -4.33169 1.48007 1.91334 2.72398 2.81505 2.91603 3.20968 3.28562 3.34282 3.51879 3.68576 3.96879 4.12031 4.25444 4.43232 4.51509 4.62235 4.79166 4.82547 4.89702 4.95669 5.00131 5.11628 5.15459 5.20670 5.22589 5.32055 5.42249 5.49101 5.52275 5.52808 5.60116 5.67789 5.68597 5.78321 5.79195 5.92504 6.14566 6.40250 6.48182 6.58954 6.65128 6.87852 7.12250 7.20453 7.30380 7.47889 7.98700 8.17832 8.53596 8.80771 9.29729 10.82002 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003121 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.094549 B = 8969.313516 C = 9185.089792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 H 0.047 0.953 4 C -0.519 4.519 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.880 5.880 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.342 6.342 13 C 0.440 3.560 14 O -0.518 6.518 15 C 0.122 3.878 16 N -0.563 5.563 17 C 0.709 3.291 18 O -0.534 6.534 19 N -0.714 5.714 20 C 0.133 3.867 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.084 4.084 26 H 0.096 0.904 27 C -0.155 4.155 28 C 0.539 3.461 29 O -0.460 6.460 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.438 0.562 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 6.886 27.927 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.130 3.870 3 H 0.065 0.935 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.121 4.121 7 N -0.516 5.516 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.186 1.186 12 O -0.257 6.257 13 C 0.281 3.719 14 O -0.408 6.408 15 C -0.001 4.001 16 N -0.309 5.309 17 C 0.410 3.590 18 O -0.406 6.406 19 N -0.379 5.379 20 C 0.042 3.958 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.104 4.104 26 H 0.114 0.886 27 C -0.212 4.212 28 C 0.325 3.675 29 O -0.328 6.328 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.283 0.717 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.007 6.829 27.230 28.073 hybrid contribution 0.273 1.362 -0.232 1.409 sum 0.267 8.192 26.998 28.215 Atomic orbital electron populations 1.22233 0.97335 1.01733 0.99703 1.21057 0.91534 0.94155 0.80257 0.93540 1.20795 1.45496 0.96387 0.92880 0.89475 1.24903 0.93441 0.98600 0.95190 1.69850 1.43803 1.36257 1.01699 0.86967 0.79975 0.85829 0.77741 1.19498 1.20615 1.18593 1.86664 1.75375 1.43295 1.20390 1.23513 0.75226 0.86484 0.86627 1.90598 1.48767 1.16792 1.84658 1.21100 1.06565 0.88961 0.83472 1.46014 1.14564 1.38108 1.32232 1.15818 0.82982 0.79274 0.80972 1.91048 1.29275 1.69275 1.51046 1.45458 1.14803 1.42542 1.35135 1.21070 0.83523 0.96051 0.95153 1.21713 0.99659 0.92003 1.02197 1.21524 1.01374 0.97916 0.94562 1.21614 1.00979 0.97104 0.96454 1.21596 0.99380 0.94198 0.99719 1.21278 1.02084 0.96118 0.90898 0.88615 1.21917 1.00477 0.96151 1.02693 1.20658 0.84456 0.82061 0.80286 1.90795 1.16913 1.55657 1.69454 0.92228 0.95167 0.91907 0.91910 0.84471 0.84822 0.71709 0.90114 0.89274 0.91655 0.90780 0.91386 0.91364 0.91594 0.90810 0.91883 0.91374 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.53 37.16 0.35 -3.11 16 2 C 0.18 4.70 2.22 -27.88 -0.06 4.63 16 3 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 4 C -0.52 -14.93 9.25 -34.44 -0.32 -15.25 16 5 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 6 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 7 N -0.88 -26.43 13.96 55.43 0.77 -25.66 16 8 Si 0.87 21.94 26.99 -169.99 -4.59 17.36 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.46 6.82 56.52 0.39 -6.07 16 12 O -0.34 -8.00 9.86 -39.28 -0.39 -8.38 16 13 C 0.44 9.17 8.00 36.01 0.29 9.45 16 14 O -0.52 -12.08 15.65 -18.75 -0.29 -12.38 16 15 C 0.12 1.85 6.30 -5.19 -0.03 1.82 16 16 N -0.56 -8.17 2.10 -122.09 -0.26 -8.43 16 17 C 0.71 10.23 8.51 -87.82 -0.75 9.49 16 18 O -0.53 -9.63 17.49 5.33 0.09 -9.54 16 19 N -0.71 -7.11 4.38 -53.88 -0.24 -7.35 16 20 C 0.13 1.26 0.58 -133.11 -0.08 1.18 16 21 C -0.12 -1.02 4.98 -26.96 -0.13 -1.16 16 22 C -0.12 -0.69 5.82 -26.68 -0.16 -0.85 16 23 C -0.12 -0.58 5.91 -26.72 -0.16 -0.73 16 24 C -0.11 -0.53 5.10 -26.68 -0.14 -0.67 16 25 C -0.08 -0.58 2.15 -90.85 -0.20 -0.77 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 C -0.16 -1.10 8.64 37.16 0.32 -0.78 16 28 C 0.54 7.16 5.67 -10.70 -0.06 7.10 16 29 O -0.46 -7.02 17.77 5.60 0.10 -6.93 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.14 1.87 7.87 -51.93 -0.41 1.46 16 35 H 0.13 1.65 8.01 -51.93 -0.42 1.23 16 36 H 0.44 3.28 7.74 -40.82 -0.32 2.96 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.37 7.35 -51.93 -0.38 -0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.30 7.35 -51.93 -0.38 -0.09 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.47 7.54 -51.93 -0.39 0.08 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 0.47 7.22 -51.93 -0.37 0.10 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -35.59 380.65 -7.39 -42.97 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.12 Total: -0.07 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -1.21 Total: 12.67 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.28 Total: -41.44 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.49 Total: -37.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.59 Total: 17.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.59 -7.39 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.307 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds