Wall clock time and date at job start Tue Mar 31 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47310 * 2 1 4 4 C 1.50703 * 109.46935 * 240.00377 * 2 1 3 5 5 H 1.08001 * 120.00228 * 274.99826 * 4 2 1 6 6 C 1.37875 * 120.00060 * 95.00008 * 4 2 1 7 7 N 1.31516 * 119.99898 * 184.91792 * 6 4 2 8 8 Si 1.86795 * 120.00258 * 4.91117 * 6 4 2 9 9 H 1.48501 * 109.47006 * 84.83589 * 8 6 4 10 10 H 1.48497 * 109.47766 * 204.83456 * 8 6 4 11 11 H 1.48503 * 109.47049 * 324.83791 * 8 6 4 12 12 O 1.45194 * 109.47300 * 120.00656 * 2 1 3 13 13 C 1.34237 * 116.99709 * 270.00091 * 12 2 1 14 14 O 1.20824 * 119.99831 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99781 * 180.02562 * 13 12 2 16 16 N 1.46499 * 109.46749 * 179.97438 * 15 13 12 17 17 C 1.33867 * 124.19699 * 270.13222 * 16 15 13 18 18 O 1.21541 * 123.78390 * 0.09325 * 17 16 15 19 19 N 1.34671 * 112.42375 * 180.29516 * 17 16 15 20 20 C 1.46842 * 106.42732 * 359.75670 * 19 17 16 21 21 C 1.52469 * 110.52713 * 241.48844 * 20 19 17 22 22 C 1.53088 * 109.56635 * 295.78892 * 21 20 19 23 23 C 1.53004 * 109.41900 * 300.84649 * 22 21 20 24 24 C 1.53010 * 109.52279 * 60.45209 * 23 22 21 25 25 C 1.52470 * 110.53011 * 118.52940 * 20 19 17 26 26 H 1.08999 * 109.45985 * 184.24008 * 25 20 19 27 27 C 1.53001 * 109.45417 * 304.18632 * 25 20 19 28 28 C 1.34918 * 124.19565 * 89.99701 * 16 15 13 29 29 O 1.21226 * 127.25570 * 0.02562 * 28 16 15 30 30 H 1.08994 * 109.47216 * 175.02961 * 1 2 3 31 31 H 1.08998 * 109.46813 * 295.03409 * 1 2 3 32 32 H 1.09009 * 109.46724 * 55.02940 * 1 2 3 33 33 H 0.97002 * 119.99895 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47294 * 59.99251 * 15 13 12 35 35 H 1.08999 * 109.46993 * 299.99329 * 15 13 12 36 36 H 0.97006 * 126.78879 * 179.75528 * 19 17 16 37 37 H 1.09008 * 109.45443 * 55.81651 * 21 20 19 38 38 H 1.09000 * 109.46178 * 175.75905 * 21 20 19 39 39 H 1.09001 * 109.47952 * 60.82895 * 22 21 20 40 40 H 1.09005 * 109.47704 * 180.86075 * 22 21 20 41 41 H 1.09002 * 109.46034 * 180.47343 * 23 22 21 42 42 H 1.09001 * 109.45872 * 300.43893 * 23 22 21 43 43 H 1.09003 * 109.47717 * 59.53065 * 24 23 22 44 44 H 1.08996 * 109.47596 * 179.56012 * 24 23 22 45 45 H 1.08994 * 109.47919 * 59.99639 * 27 25 20 46 46 H 1.08998 * 109.47012 * 179.97438 * 27 25 20 47 47 H 1.09004 * 109.46814 * 299.99337 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3134 1.8791 -2.3175 9 1 3.5990 2.3949 -1.7823 10 1 2.1056 2.3993 -3.6928 11 1 1.1985 2.3275 -1.4450 12 8 2.0140 -0.6846 1.1854 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7194 -0.5773 3.5491 16 7 2.8583 0.4436 4.5906 17 6 3.9725 1.1543 4.8037 18 8 4.9901 1.0275 4.1513 19 7 3.8407 2.0222 5.8249 20 6 2.4731 1.8598 6.3341 21 6 1.6907 3.1604 6.1892 22 6 2.3268 4.2418 7.0664 23 6 2.3195 3.7825 8.5258 24 6 3.1277 2.4901 8.6591 25 6 2.4947 1.4018 7.7882 26 1 1.4752 1.2145 8.1252 27 6 3.3142 0.1151 7.9050 28 6 1.8782 0.7860 5.4522 29 8 0.7583 0.3255 5.5105 30 1 -0.3633 -1.0237 -0.0890 31 1 -0.3633 0.4349 0.9311 32 1 -0.3633 0.5891 -0.8422 33 1 2.9368 -0.1047 -4.2555 34 1 3.6884 -1.0403 3.3630 35 1 2.0105 -1.3375 3.8772 36 1 4.5159 2.6339 6.1583 37 1 1.7087 3.4808 5.1475 38 1 0.6587 3.0002 6.5016 39 1 3.3540 4.4133 6.7444 40 1 1.7573 5.1667 6.9735 41 1 2.7647 4.5556 9.1521 42 1 1.2928 3.6033 8.8450 43 1 4.1524 2.6669 8.3323 44 1 3.1285 2.1678 9.7004 45 1 4.3337 0.3015 7.5675 46 1 3.3303 -0.2123 8.9446 47 1 2.8627 -0.6606 7.2864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:18 Heat of formation + Delta-G solvation = -164.526608 kcal Electronic energy + Delta-G solvation = -31293.690068 eV Core-core repulsion = 27055.071784 eV Total energy + Delta-G solvation = -4238.618284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.07161 -41.46718 -40.01230 -39.43433 -37.83764 -36.95912 -35.30558 -35.13471 -33.71306 -32.74620 -31.08410 -30.14622 -27.56961 -27.51361 -25.26130 -24.39378 -23.45194 -22.68560 -21.88325 -21.38192 -20.62503 -19.65142 -19.16004 -18.79132 -18.13222 -17.64092 -17.27396 -17.12214 -16.73497 -16.65368 -16.16260 -15.97999 -15.66160 -15.39793 -15.20255 -14.87447 -14.70752 -14.39476 -14.27160 -14.08764 -14.01928 -13.83764 -13.34683 -13.15071 -13.12452 -12.99227 -12.83779 -12.67204 -12.65684 -12.25222 -12.12444 -12.02536 -11.91779 -11.75606 -11.54443 -11.50063 -11.43806 -11.30434 -11.05883 -10.96040 -10.93102 -10.47147 -8.52195 -6.61788 0.41571 0.78388 1.05982 1.20031 1.24051 1.33463 1.57770 1.99408 2.08739 2.14415 2.74234 2.85025 3.27148 3.48046 3.61994 3.71008 3.91776 4.00809 4.03151 4.07711 4.13541 4.15125 4.26933 4.40340 4.41907 4.43199 4.50782 4.55440 4.62212 4.72275 4.80409 4.84609 4.90829 5.03115 5.10728 5.19568 5.24558 5.25795 5.30453 5.31061 5.34262 5.51327 5.52080 5.68501 5.81881 6.06681 6.16723 6.46895 6.69789 6.94504 7.05228 8.63088 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003121 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.094549 B = 8969.313516 C = 9185.089792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.532 4.532 5 H 0.053 0.947 6 C 0.038 3.962 7 N -0.919 5.919 8 Si 0.925 3.075 9 H -0.274 1.274 10 H -0.262 1.262 11 H -0.253 1.253 12 O -0.352 6.352 13 C 0.435 3.565 14 O -0.545 6.545 15 C 0.127 3.873 16 N -0.569 5.569 17 C 0.704 3.296 18 O -0.576 6.576 19 N -0.690 5.690 20 C 0.139 3.861 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.079 4.079 26 H 0.100 0.900 27 C -0.155 4.155 28 C 0.532 3.468 29 O -0.482 6.482 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.277 0.723 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.451 0.549 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 8.643 30.970 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.130 3.870 3 H 0.051 0.949 4 C -0.569 4.569 5 H 0.071 0.929 6 C -0.163 4.163 7 N -0.556 5.556 8 Si 0.748 3.252 9 H -0.199 1.199 10 H -0.186 1.186 11 H -0.177 1.177 12 O -0.267 6.267 13 C 0.278 3.722 14 O -0.436 6.436 15 C 0.004 3.996 16 N -0.315 5.315 17 C 0.405 3.595 18 O -0.452 6.452 19 N -0.356 5.356 20 C 0.049 3.951 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.098 4.098 26 H 0.118 0.882 27 C -0.212 4.212 28 C 0.320 3.680 29 O -0.352 6.352 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.299 0.701 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.245 8.609 30.327 31.526 hybrid contribution 0.329 0.746 -1.106 1.374 sum 0.084 9.354 29.221 30.682 Atomic orbital electron populations 1.22131 0.95101 1.02485 1.00595 1.20872 0.93123 0.92873 0.80153 0.94861 1.20914 1.46070 0.95111 0.94823 0.92869 1.25613 0.93028 1.03023 0.94679 1.69942 1.44999 1.38197 1.02496 0.86072 0.79913 0.80398 0.78769 1.19902 1.18598 1.17673 1.86611 1.75858 1.43458 1.20771 1.24550 0.74208 0.86285 0.87178 1.90574 1.49926 1.18031 1.85086 1.21239 1.07891 0.89281 0.81154 1.46162 1.15147 1.38190 1.32022 1.15993 0.82370 0.79692 0.81436 1.91019 1.30665 1.70701 1.52766 1.45377 1.15391 1.41269 1.33547 1.21253 0.82589 0.95236 0.96024 1.21743 1.00146 0.92265 1.01364 1.21541 1.01362 0.97052 0.95032 1.21606 1.01407 0.97371 0.95354 1.21618 0.99395 0.93325 1.00122 1.21336 1.02718 0.96858 0.88895 0.88168 1.21929 0.99967 0.95717 1.03599 1.21345 0.83997 0.82367 0.80252 1.90775 1.17717 1.56603 1.70124 0.91510 0.93741 0.91535 0.91304 0.82848 0.81780 0.70087 0.92797 0.88903 0.91250 0.90062 0.89749 0.91010 0.90988 0.88994 0.92266 0.89385 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.54 9.53 71.98 0.69 -5.86 16 2 C 0.18 9.49 2.22 29.85 0.07 9.56 16 3 H 0.03 1.81 4.31 -2.39 -0.01 1.80 16 4 C -0.53 -31.43 9.25 25.60 0.24 -31.19 16 5 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 6 C 0.04 2.24 5.47 84.65 0.46 2.70 16 7 N -0.92 -56.23 13.96 21.45 0.30 -55.93 16 8 Si 0.93 45.36 26.99 68.60 1.85 47.21 16 9 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.25 -11.94 6.82 99.48 0.68 -11.26 16 12 O -0.35 -16.62 9.86 -51.48 -0.51 -17.12 16 13 C 0.43 18.12 8.00 71.24 0.57 18.69 16 14 O -0.54 -25.51 15.65 21.97 0.34 -25.16 16 15 C 0.13 3.81 6.30 85.63 0.54 4.35 16 16 N -0.57 -16.23 2.10 -777.32 -1.63 -17.87 16 17 C 0.70 19.99 8.51 179.37 1.53 21.52 16 18 O -0.58 -20.81 17.49 -3.84 -0.07 -20.88 16 19 N -0.69 -12.81 4.38 -442.71 -1.94 -14.74 16 20 C 0.14 2.43 0.58 2.58 0.00 2.43 16 21 C -0.12 -1.86 4.98 30.45 0.15 -1.71 16 22 C -0.11 -1.04 5.82 30.62 0.18 -0.86 16 23 C -0.12 -0.66 5.91 30.60 0.18 -0.48 16 24 C -0.11 -0.62 5.10 30.63 0.16 -0.46 16 25 C -0.08 -0.88 2.15 -10.94 -0.02 -0.90 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 27 C -0.15 -1.85 8.64 71.98 0.62 -1.23 16 28 C 0.53 13.71 5.67 87.78 0.50 14.21 16 29 O -0.48 -14.41 17.77 -2.86 -0.05 -14.46 16 30 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.15 4.11 7.87 -2.39 -0.02 4.09 16 35 H 0.16 3.86 8.01 -2.39 -0.02 3.84 16 36 H 0.45 5.87 7.74 -92.70 -0.72 5.15 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 0.59 7.35 -2.39 -0.02 0.58 16 40 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 0.36 7.35 -2.39 -0.02 0.35 16 44 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 0.76 7.54 -2.39 -0.02 0.74 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.04 0.58 7.22 -2.39 -0.02 0.56 16 Total: -1.00 -79.07 380.65 4.40 -74.67 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.25 Total: 13.53 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 5.85 Total: 30.75 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -3.27 Total: -88.54 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: -0.28 Total: -77.62 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.85 Total: 47.21 kcal Total: -79.07 4.40 -74.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.858 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds