Wall clock time and date at job start Tue Mar 31 2020 21:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 O 1.45202 * 109.47304 * 120.00214 * 2 1 3 13 13 C 1.34229 * 116.99647 * 270.00311 * 12 2 1 14 14 O 1.20823 * 120.00153 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99800 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.33861 * 124.20071 * 269.69790 * 16 15 13 18 18 O 1.21538 * 123.78687 * 0.02562 * 17 16 15 19 19 N 1.34677 * 112.42537 * 179.86488 * 17 16 15 20 20 C 1.46832 * 106.42710 * 0.38606 * 19 17 16 21 21 C 1.52466 * 110.54230 * 118.28584 * 20 19 17 22 22 C 1.53083 * 109.58834 * 64.29670 * 21 20 19 23 23 C 1.53013 * 109.42255 * 59.13935 * 22 21 20 24 24 C 1.53006 * 109.50180 * 299.52856 * 23 22 21 25 25 C 1.52471 * 110.53581 * 241.27017 * 20 19 17 26 26 H 1.09000 * 109.44970 * 175.67214 * 25 20 19 27 27 C 1.52998 * 109.45379 * 55.74076 * 25 20 19 28 28 C 1.34916 * 124.19255 * 90.00161 * 16 15 13 29 29 O 1.21232 * 127.25842 * 359.97438 * 28 16 15 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46807 * 299.99941 * 15 13 12 35 35 H 1.09001 * 109.47125 * 59.99834 * 15 13 12 36 36 H 0.97004 * 126.78906 * 180.12322 * 19 17 16 37 37 H 1.09005 * 109.45190 * 184.33319 * 21 20 19 38 38 H 1.08998 * 109.45245 * 304.28479 * 21 20 19 39 39 H 1.09001 * 109.47928 * 179.11762 * 22 21 20 40 40 H 1.08991 * 109.48071 * 299.14779 * 22 21 20 41 41 H 1.08998 * 109.46613 * 59.53555 * 23 22 21 42 42 H 1.08993 * 109.46329 * 179.52331 * 23 22 21 43 43 H 1.09003 * 109.47740 * 180.45927 * 24 23 22 44 44 H 1.08993 * 109.48396 * 300.47983 * 24 23 22 45 45 H 1.09002 * 109.47079 * 60.00095 * 27 25 20 46 46 H 1.08996 * 109.47156 * 179.97438 * 27 25 20 47 47 H 1.09001 * 109.47095 * 299.99994 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7182 -0.5772 3.5495 16 7 2.8573 0.4437 4.5908 17 6 3.9745 1.1477 4.8098 18 8 4.9955 1.0135 4.1643 19 7 3.8392 2.0240 5.8236 20 6 2.4704 1.8644 6.3304 21 6 2.4883 1.4126 7.7865 22 6 3.1177 2.5048 8.6550 23 6 2.3090 3.7961 8.5140 24 6 2.3212 4.2495 7.0528 25 6 1.6885 3.1644 6.1778 26 1 0.6555 3.0052 6.4872 27 6 1.7188 3.6083 4.7139 28 6 1.8770 0.7868 5.4519 29 8 0.7565 0.3276 5.5093 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7011 1.1560 -3.4844 34 1 2.0087 -1.3370 3.8773 35 1 3.6871 -1.0409 3.3639 36 1 4.5139 2.6366 6.1560 37 1 1.4679 1.2257 8.1212 38 1 3.0729 0.4969 7.8753 39 1 3.1154 2.1866 9.6975 40 1 4.1433 2.6810 8.3309 41 1 1.2813 3.6174 8.8303 42 1 2.7516 4.5718 9.1388 43 1 1.7518 5.1738 6.9542 44 1 3.3494 4.4202 6.7337 45 1 1.2664 2.8368 4.0908 46 1 1.1595 4.5375 4.6044 47 1 2.7516 3.7668 4.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:22 Heat of formation + Delta-G solvation = -142.258783 kcal Electronic energy + Delta-G solvation = -31334.424972 eV Core-core repulsion = 27096.772294 eV Total energy + Delta-G solvation = -4237.652678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.99984 -39.65087 -38.87520 -38.42015 -36.02444 -35.63498 -34.16314 -33.27285 -32.99057 -30.34832 -29.94041 -28.59801 -26.74764 -25.31976 -24.30431 -23.03710 -22.35905 -21.75508 -20.60748 -20.14709 -19.48833 -18.06128 -17.59234 -16.84173 -16.56656 -16.38445 -15.75252 -15.66222 -15.29671 -15.24686 -15.10676 -14.83598 -14.59538 -14.30211 -14.21404 -13.44228 -13.39834 -13.13867 -12.94617 -12.72314 -12.49085 -12.09470 -12.07308 -11.91019 -11.76534 -11.34585 -11.22675 -11.19509 -11.06460 -10.98495 -10.86909 -10.85399 -10.71433 -10.42901 -10.40024 -10.27062 -10.06113 -9.61145 -9.57255 -9.43211 -8.92986 -8.48985 -6.18188 -4.25257 1.53384 1.96675 2.84122 2.88720 2.97039 3.27662 3.30746 3.33452 3.62149 3.76248 4.05658 4.18800 4.33744 4.51788 4.59043 4.66784 4.85832 4.89717 4.98055 5.05144 5.14681 5.19103 5.22266 5.28643 5.34990 5.48088 5.52959 5.56426 5.63160 5.66597 5.67966 5.73728 5.85505 5.87967 6.02539 6.30114 6.62199 6.63646 6.88153 6.89363 6.93054 7.12195 7.26260 7.58370 7.71340 7.90577 8.03768 8.12408 8.55595 8.84852 9.39872 10.89213 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.002853 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.291775 B = 9812.378315 C =10021.136714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.351 6.351 13 C 0.441 3.559 14 O -0.509 6.509 15 C 0.122 3.878 16 N -0.562 5.562 17 C 0.710 3.290 18 O -0.536 6.536 19 N -0.714 5.714 20 C 0.132 3.868 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.084 4.084 26 H 0.093 0.907 27 C -0.156 4.156 28 C 0.538 3.462 29 O -0.459 6.459 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.437 0.563 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 4.390 24.780 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.166 3.834 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.267 6.267 13 C 0.282 3.718 14 O -0.399 6.399 15 C 0.000 4.000 16 N -0.309 5.309 17 C 0.410 3.590 18 O -0.408 6.408 19 N -0.379 5.379 20 C 0.041 3.959 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.150 4.150 25 C -0.103 4.103 26 H 0.112 0.888 27 C -0.214 4.214 28 C 0.325 3.675 29 O -0.328 6.328 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.283 0.717 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.738 4.446 24.147 24.705 hybrid contribution 0.461 -0.005 -0.898 1.009 sum 3.199 4.442 23.249 23.885 Atomic orbital electron populations 1.22164 0.97426 1.00207 1.01434 1.20677 0.91398 0.93935 0.77421 0.93529 1.20992 1.32554 1.13644 0.88816 0.91244 1.24891 0.94879 0.95114 0.99081 1.69892 1.35947 1.22576 1.24307 0.86306 0.79239 0.79530 0.80900 1.19892 1.21036 1.19935 1.86469 1.75671 1.43451 1.21100 1.23328 0.75555 0.86439 0.86508 1.90600 1.48200 1.16577 1.84507 1.21056 1.06367 0.88938 0.83688 1.45981 1.14368 1.38348 1.32166 1.15806 0.82978 0.79271 0.80909 1.91037 1.29118 1.69360 1.51324 1.45447 1.14565 1.42012 1.35867 1.21085 0.83534 0.95953 0.95287 1.21699 1.03547 0.99377 0.90651 1.21520 0.99419 0.94652 0.99752 1.21615 1.00926 0.97117 0.96501 1.21606 1.01362 0.97836 0.94151 1.21285 0.99587 0.91796 0.97658 0.88848 1.21928 1.02955 1.02541 0.93949 1.20664 0.84500 0.81988 0.80345 1.90801 1.16809 1.55786 1.69378 0.88165 0.94330 0.96545 0.92328 0.84999 0.84706 0.71742 0.89208 0.90635 0.90897 0.91664 0.91383 0.91437 0.90773 0.91640 0.91308 0.91763 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.32 37.16 0.35 -3.65 16 2 C 0.22 5.96 2.56 -27.88 -0.07 5.89 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.88 8.90 -34.44 -0.31 -15.19 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.59 11.31 55.43 0.63 -24.97 16 8 Si 0.91 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 O -0.35 -8.45 9.86 -39.26 -0.39 -8.83 16 13 C 0.44 9.37 8.00 36.01 0.29 9.66 16 14 O -0.51 -12.06 14.88 -18.75 -0.28 -12.34 16 15 C 0.12 1.90 6.30 -5.20 -0.03 1.86 16 16 N -0.56 -8.31 2.10 -122.09 -0.26 -8.57 16 17 C 0.71 10.35 8.52 -87.82 -0.75 9.60 16 18 O -0.54 -9.66 17.48 5.33 0.09 -9.57 16 19 N -0.71 -7.28 4.38 -53.88 -0.24 -7.51 16 20 C 0.13 1.30 0.58 -133.11 -0.08 1.22 16 21 C -0.11 -0.80 4.98 -26.96 -0.13 -0.93 16 22 C -0.12 -0.58 5.82 -26.68 -0.16 -0.73 16 23 C -0.12 -0.62 5.91 -26.72 -0.16 -0.78 16 24 C -0.11 -0.72 5.10 -26.69 -0.14 -0.86 16 25 C -0.08 -0.78 2.15 -90.85 -0.20 -0.98 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 C -0.16 -1.96 8.65 37.16 0.32 -1.64 16 28 C 0.54 7.37 5.67 -10.70 -0.06 7.31 16 29 O -0.46 -7.27 17.77 5.60 0.10 -7.17 16 30 H 0.10 2.76 6.06 -51.93 -0.31 2.44 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.13 1.69 8.01 -51.93 -0.42 1.28 16 35 H 0.14 1.85 7.86 -51.93 -0.41 1.44 16 36 H 0.44 3.38 7.75 -40.82 -0.32 3.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.30 7.36 -51.93 -0.38 -0.08 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.41 7.36 -51.93 -0.38 0.02 16 45 H 0.07 1.13 6.44 -51.93 -0.33 0.80 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.81 7.54 -51.93 -0.39 0.41 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -34.42 379.46 -7.94 -42.37 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.09 Total: 2.09 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -1.21 Total: 12.44 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.13 Total: -41.04 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.47 Total: -37.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.42 -7.94 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.891 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds