Wall clock time and date at job start Tue Mar 31 2020 21:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 O 1.45202 * 109.47304 * 120.00214 * 2 1 3 13 13 C 1.34229 * 116.99647 * 270.00311 * 12 2 1 14 14 O 1.20823 * 120.00153 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99800 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.33861 * 124.20071 * 269.69790 * 16 15 13 18 18 O 1.21538 * 123.78687 * 0.02562 * 17 16 15 19 19 N 1.34677 * 112.42537 * 179.86488 * 17 16 15 20 20 C 1.46832 * 106.42710 * 0.38606 * 19 17 16 21 21 C 1.52466 * 110.54230 * 118.28584 * 20 19 17 22 22 C 1.53083 * 109.58834 * 64.29670 * 21 20 19 23 23 C 1.53013 * 109.42255 * 59.13935 * 22 21 20 24 24 C 1.53006 * 109.50180 * 299.52856 * 23 22 21 25 25 C 1.52471 * 110.53581 * 241.27017 * 20 19 17 26 26 H 1.09000 * 109.44970 * 175.67214 * 25 20 19 27 27 C 1.52998 * 109.45379 * 55.74076 * 25 20 19 28 28 C 1.34916 * 124.19255 * 90.00161 * 16 15 13 29 29 O 1.21232 * 127.25842 * 359.97438 * 28 16 15 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46807 * 299.99941 * 15 13 12 35 35 H 1.09001 * 109.47125 * 59.99834 * 15 13 12 36 36 H 0.97004 * 126.78906 * 180.12322 * 19 17 16 37 37 H 1.09005 * 109.45190 * 184.33319 * 21 20 19 38 38 H 1.08998 * 109.45245 * 304.28479 * 21 20 19 39 39 H 1.09001 * 109.47928 * 179.11762 * 22 21 20 40 40 H 1.08991 * 109.48071 * 299.14779 * 22 21 20 41 41 H 1.08998 * 109.46613 * 59.53555 * 23 22 21 42 42 H 1.08993 * 109.46329 * 179.52331 * 23 22 21 43 43 H 1.09003 * 109.47740 * 180.45927 * 24 23 22 44 44 H 1.08993 * 109.48396 * 300.47983 * 24 23 22 45 45 H 1.09002 * 109.47079 * 60.00095 * 27 25 20 46 46 H 1.08996 * 109.47156 * 179.97438 * 27 25 20 47 47 H 1.09001 * 109.47095 * 299.99994 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7182 -0.5772 3.5495 16 7 2.8573 0.4437 4.5908 17 6 3.9745 1.1477 4.8098 18 8 4.9955 1.0135 4.1643 19 7 3.8392 2.0240 5.8236 20 6 2.4704 1.8644 6.3304 21 6 2.4883 1.4126 7.7865 22 6 3.1177 2.5048 8.6550 23 6 2.3090 3.7961 8.5140 24 6 2.3212 4.2495 7.0528 25 6 1.6885 3.1644 6.1778 26 1 0.6555 3.0052 6.4872 27 6 1.7188 3.6083 4.7139 28 6 1.8770 0.7868 5.4519 29 8 0.7565 0.3276 5.5093 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7011 1.1560 -3.4844 34 1 2.0087 -1.3370 3.8773 35 1 3.6871 -1.0409 3.3639 36 1 4.5139 2.6366 6.1560 37 1 1.4679 1.2257 8.1212 38 1 3.0729 0.4969 7.8753 39 1 3.1154 2.1866 9.6975 40 1 4.1433 2.6810 8.3309 41 1 1.2813 3.6174 8.8303 42 1 2.7516 4.5718 9.1388 43 1 1.7518 5.1738 6.9542 44 1 3.3494 4.4202 6.7337 45 1 1.2664 2.8368 4.0908 46 1 1.1595 4.5375 4.6044 47 1 2.7516 3.7668 4.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:21 Heat of formation + Delta-G solvation = -164.061050 kcal Electronic energy + Delta-G solvation = -31335.370389 eV Core-core repulsion = 27096.772294 eV Total energy + Delta-G solvation = -4238.598096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.05644 -41.36875 -39.99803 -39.42029 -37.77156 -36.94052 -35.41225 -35.14586 -33.72030 -31.92873 -31.06777 -30.03562 -27.59047 -27.49479 -25.24820 -24.41679 -23.47354 -22.71786 -21.96866 -21.33521 -20.58088 -19.23227 -19.13404 -18.70329 -17.88739 -17.71374 -17.15536 -16.97523 -16.74040 -16.71548 -16.12899 -16.04990 -15.65000 -15.40980 -15.16409 -14.86601 -14.47039 -14.33667 -14.07958 -14.00478 -13.84890 -13.59080 -13.17723 -13.13915 -13.06693 -12.85958 -12.81831 -12.69199 -12.43648 -12.23328 -12.20158 -12.02935 -11.94741 -11.76030 -11.66155 -11.49031 -11.42078 -11.10366 -11.01573 -10.93180 -10.63329 -10.45258 -8.32180 -6.49685 0.42997 0.80734 1.13747 1.40089 1.44428 1.52069 1.63847 2.01612 2.11928 2.39607 2.75673 2.98516 3.27539 3.49038 3.69101 3.72521 3.88251 4.02187 4.04231 4.12587 4.17289 4.27707 4.37309 4.43016 4.45561 4.46245 4.59416 4.70990 4.71646 4.76478 4.81026 4.91683 5.05287 5.06545 5.12953 5.19825 5.23368 5.31943 5.35835 5.43598 5.53588 5.55902 5.70211 5.83621 5.84481 5.99791 6.18224 6.53428 6.79576 6.96447 7.21479 8.75497 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.002853 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.291775 B = 9812.378315 C =10021.136714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.221 3.779 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.269 1.269 12 O -0.356 6.356 13 C 0.431 3.569 14 O -0.539 6.539 15 C 0.130 3.870 16 N -0.569 5.569 17 C 0.705 3.295 18 O -0.575 6.575 19 N -0.690 5.690 20 C 0.139 3.861 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.079 4.079 26 H 0.096 0.904 27 C -0.153 4.153 28 C 0.531 3.469 29 O -0.484 6.484 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.272 0.728 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.451 0.549 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 4.203 26.879 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.194 1.194 12 O -0.272 6.272 13 C 0.274 3.726 14 O -0.429 6.429 15 C 0.007 3.993 16 N -0.315 5.315 17 C 0.406 3.594 18 O -0.451 6.451 19 N -0.355 5.355 20 C 0.049 3.951 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.098 4.098 26 H 0.115 0.885 27 C -0.210 4.210 28 C 0.319 3.681 29 O -0.354 6.354 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.299 0.701 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.093 0.907 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.400 4.287 26.315 26.878 hybrid contribution 0.208 0.135 -1.512 1.532 sum 3.609 4.422 24.803 25.452 Atomic orbital electron populations 1.21974 0.96620 1.00537 1.00681 1.20364 0.92011 0.91965 0.78896 0.97745 1.21286 1.33583 1.14172 0.89834 0.91175 1.25873 0.94606 0.95690 1.02235 1.70016 1.36448 1.23692 1.25364 0.85198 0.78754 0.78702 0.76552 1.18574 1.20134 1.19377 1.86453 1.76068 1.43448 1.21234 1.24531 0.74532 0.86334 0.87187 1.90590 1.49366 1.18028 1.84954 1.21204 1.07833 0.89173 0.81100 1.46139 1.14978 1.38463 1.31917 1.15977 0.82354 0.79707 0.81373 1.91007 1.30449 1.70724 1.52956 1.45361 1.15097 1.40755 1.34307 1.21254 0.82590 0.94880 0.96359 1.21767 1.04369 1.00451 0.88241 1.21550 0.99457 0.93706 1.00224 1.21609 1.01414 0.97546 0.95171 1.21607 1.01370 0.96801 0.94688 1.21306 1.00171 0.92397 0.95951 0.88532 1.21876 1.01847 1.01650 0.95654 1.21381 0.84019 0.82315 0.80348 1.90778 1.17676 1.56817 1.70164 0.89940 0.93275 0.96169 0.91922 0.82014 0.82673 0.70058 0.88694 0.90183 0.89037 0.90966 0.91039 0.89702 0.90029 0.91134 0.95730 0.90680 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.32 71.98 0.67 -6.83 16 2 C 0.22 12.57 2.56 29.85 0.08 12.65 16 3 H 0.00 0.30 7.16 -2.38 -0.02 0.29 16 4 C -0.55 -32.13 8.90 25.60 0.23 -31.90 16 5 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.85 11.31 21.45 0.24 -53.61 16 8 Si 0.99 43.70 29.54 68.60 2.03 45.72 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 O -0.36 -17.70 9.86 -51.41 -0.51 -18.21 16 13 C 0.43 19.02 8.00 71.24 0.57 19.59 16 14 O -0.54 -26.95 14.88 21.97 0.33 -26.62 16 15 C 0.13 4.04 6.30 85.63 0.54 4.58 16 16 N -0.57 -16.90 2.10 -777.31 -1.63 -18.53 16 17 C 0.70 20.55 8.52 179.37 1.53 22.08 16 18 O -0.58 -21.04 17.48 -3.84 -0.07 -21.10 16 19 N -0.69 -13.31 4.38 -442.72 -1.94 -15.25 16 20 C 0.14 2.57 0.58 2.59 0.00 2.57 16 21 C -0.11 -1.24 4.98 30.45 0.15 -1.09 16 22 C -0.11 -0.68 5.82 30.63 0.18 -0.50 16 23 C -0.12 -0.74 5.91 30.60 0.18 -0.56 16 24 C -0.11 -1.10 5.10 30.62 0.16 -0.94 16 25 C -0.08 -1.38 2.15 -10.94 -0.02 -1.40 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 C -0.15 -3.92 8.65 71.98 0.62 -3.30 16 28 C 0.53 14.44 5.67 87.78 0.50 14.93 16 29 O -0.48 -15.36 17.77 -2.88 -0.05 -15.42 16 30 H 0.08 4.70 6.06 -2.39 -0.01 4.69 16 31 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 34 H 0.16 4.03 8.01 -2.39 -0.02 4.01 16 35 H 0.16 4.21 7.86 -2.39 -0.02 4.19 16 36 H 0.45 6.13 7.75 -92.71 -0.72 5.41 16 37 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 40 H 0.07 0.37 7.36 -2.39 -0.02 0.36 16 41 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.67 7.36 -2.39 -0.02 0.65 16 45 H 0.02 0.83 6.44 -2.39 -0.02 0.82 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.05 1.36 7.54 -2.39 -0.02 1.34 16 Total: -1.00 -78.41 379.46 4.51 -73.90 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.28 Total: 17.90 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 5.83 Total: 31.21 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.33 Total: -87.39 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -0.30 Total: -81.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.41 4.51 -73.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.157 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds