Wall clock time and date at job start Tue Mar 31 2020 21:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 C 1.50696 * 109.47276 * 240.00407 * 2 1 3 5 5 H 1.08001 * 119.99757 * 240.00063 * 4 2 1 6 6 C 1.37878 * 120.00506 * 59.99410 * 4 2 1 7 7 N 1.31512 * 119.99642 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00125 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47163 * 90.00169 * 8 6 4 10 10 H 1.48499 * 109.47037 * 210.00250 * 8 6 4 11 11 H 1.48504 * 109.47126 * 329.99865 * 8 6 4 12 12 O 1.45196 * 109.47051 * 119.99953 * 2 1 3 13 13 C 1.34234 * 116.99938 * 270.00261 * 12 2 1 14 14 O 1.20826 * 119.99712 * 359.72483 * 13 12 2 15 15 C 1.50700 * 120.00068 * 180.02562 * 13 12 2 16 16 N 1.46497 * 109.47128 * 179.97438 * 15 13 12 17 17 C 1.33862 * 124.19817 * 269.70270 * 16 15 13 18 18 O 1.21540 * 123.78911 * 0.02562 * 17 16 15 19 19 N 1.34680 * 112.42315 * 179.83859 * 17 16 15 20 20 C 1.46827 * 106.42206 * 0.40223 * 19 17 16 21 21 C 1.52476 * 110.54899 * 118.28712 * 20 19 17 22 22 C 1.53088 * 109.51830 * 181.61907 * 21 20 19 23 23 C 1.53001 * 109.42128 * 300.84188 * 22 21 20 24 24 C 1.53000 * 109.57242 * 60.39310 * 23 22 21 25 25 C 1.52480 * 110.54787 * 241.25180 * 20 19 17 26 26 H 1.09000 * 109.46279 * 298.38686 * 25 20 19 27 27 C 1.53000 * 109.46309 * 58.36659 * 25 20 19 28 28 C 1.34917 * 124.19165 * 90.00120 * 16 15 13 29 29 O 1.21230 * 127.25649 * 0.02562 * 28 16 15 30 30 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47394 * 300.00082 * 1 2 3 32 32 H 1.08999 * 109.47287 * 60.00672 * 1 2 3 33 33 H 0.97004 * 119.99898 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47012 * 300.00044 * 15 13 12 35 35 H 1.08999 * 109.46550 * 59.99877 * 15 13 12 36 36 H 0.97004 * 126.79425 * 180.15144 * 19 17 16 37 37 H 1.09000 * 109.46392 * 301.63838 * 21 20 19 38 38 H 1.09005 * 109.46051 * 61.60737 * 21 20 19 39 39 H 1.09002 * 109.48190 * 180.85424 * 22 21 20 40 40 H 1.09004 * 109.47806 * 60.81936 * 22 21 20 41 41 H 1.09000 * 109.44780 * 300.36150 * 23 22 21 42 42 H 1.09000 * 109.43911 * 180.41379 * 23 22 21 43 43 H 1.08999 * 109.48117 * 179.62249 * 24 23 22 44 44 H 1.08998 * 109.48046 * 59.58139 * 24 23 22 45 45 H 1.09005 * 109.47205 * 59.99691 * 27 25 20 46 46 H 1.08999 * 109.47531 * 180.02562 * 27 25 20 47 47 H 1.09001 * 109.47189 * 300.00633 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.3430 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6295 -1.7581 -3.7122 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0641 2.2811 14 8 2.0024 1.2527 2.2490 15 6 2.7193 -0.5769 3.5492 16 7 2.8581 0.4440 4.5906 17 6 3.9750 1.1489 4.8091 18 8 4.9957 1.0154 4.1630 19 7 3.8393 2.0253 5.8227 20 6 2.4709 1.8645 6.3301 21 6 2.4897 1.4132 7.7864 22 6 1.0539 1.2142 8.2788 23 6 0.2831 2.5290 8.1442 24 6 0.2546 2.9584 6.6759 25 6 1.6876 3.1639 6.1780 26 1 2.1670 3.9478 6.7643 27 6 1.6611 3.5736 4.7041 28 6 1.8780 0.7864 5.4522 29 8 0.7581 0.3257 5.5106 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 0.7086 1.1612 -3.4844 34 1 2.0105 -1.3371 3.8773 35 1 3.6884 -1.0398 3.3631 36 1 4.5135 2.6387 6.1545 37 1 3.0354 0.4731 7.8683 38 1 2.9807 2.1722 8.3955 39 1 1.0675 0.9062 9.3243 40 1 0.5674 0.4447 7.6792 41 1 0.7738 3.2998 8.7385 42 1 -0.7372 2.3896 8.5015 43 1 -0.3006 3.8916 6.5809 44 1 -0.2298 2.1847 6.0803 45 1 1.1820 2.7896 4.1175 46 1 1.1016 4.5026 4.5951 47 1 2.6813 3.7205 4.3494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:24 Heat of formation + Delta-G solvation = -140.558081 kcal Electronic energy + Delta-G solvation = -31577.941795 eV Core-core repulsion = 27340.362865 eV Total energy + Delta-G solvation = -4237.578930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03022 -39.65703 -39.09478 -37.93319 -36.09200 -35.74988 -34.31297 -33.27676 -32.91638 -30.04036 -29.88645 -28.64444 -26.65793 -25.32451 -24.23084 -22.89775 -22.42078 -21.56697 -21.23782 -19.83115 -19.38537 -18.13557 -17.64361 -16.87711 -16.49754 -16.39272 -15.75729 -15.62242 -15.25561 -15.13832 -15.04568 -14.86299 -14.46270 -14.32837 -13.72284 -13.67232 -13.36463 -13.12043 -12.93641 -12.72801 -12.43438 -12.09660 -12.01460 -11.88394 -11.76420 -11.30985 -11.22700 -11.21748 -11.07516 -10.93321 -10.84040 -10.81359 -10.52407 -10.41654 -10.38660 -10.26983 -9.92404 -9.60434 -9.56216 -9.42914 -8.92669 -8.49613 -6.18582 -4.25549 1.54361 1.96294 2.83201 2.88095 2.96459 3.25617 3.30907 3.35165 3.62035 3.75512 4.12346 4.23655 4.33557 4.62492 4.72148 4.75580 4.86489 4.99362 5.10036 5.10669 5.14491 5.18600 5.25562 5.30075 5.43141 5.49757 5.55350 5.65841 5.69940 5.73851 5.81712 5.91356 5.92837 5.99758 6.19039 6.31699 6.61750 6.63183 6.87622 6.88871 6.92788 7.11748 7.28592 7.58246 7.70932 7.90223 8.03130 8.12056 8.55268 8.84857 9.39695 10.88873 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.003046 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.325306 B = 9189.260096 C = 9596.579761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.441 3.559 14 O -0.509 6.509 15 C 0.122 3.878 16 N -0.563 5.563 17 C 0.709 3.291 18 O -0.536 6.536 19 N -0.719 5.719 20 C 0.129 3.871 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.080 4.080 26 H 0.088 0.912 27 C -0.157 4.157 28 C 0.541 3.459 29 O -0.455 6.455 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.438 0.562 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 3.261 24.396 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.267 6.267 13 C 0.282 3.718 14 O -0.399 6.399 15 C -0.001 4.001 16 N -0.309 5.309 17 C 0.410 3.590 18 O -0.408 6.408 19 N -0.383 5.383 20 C 0.039 3.961 21 C -0.149 4.149 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.100 4.100 26 H 0.107 0.893 27 C -0.214 4.214 28 C 0.328 3.672 29 O -0.323 6.323 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.283 0.717 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.078 3.316 23.758 24.012 hybrid contribution 0.566 0.088 -0.876 1.046 sum 1.644 3.404 22.882 23.192 Atomic orbital electron populations 1.22161 0.97419 1.00195 1.01414 1.20684 0.91405 0.93957 0.77440 0.93513 1.21025 1.32570 1.13540 0.88802 0.91196 1.24891 0.94915 0.95088 0.99089 1.69900 1.36050 1.22545 1.24199 0.86250 0.79331 0.79112 0.81317 1.20330 1.20977 1.19559 1.86469 1.75675 1.43468 1.21081 1.23328 0.75548 0.86454 0.86510 1.90604 1.48246 1.16506 1.84498 1.21054 1.06348 0.88956 0.83720 1.46004 1.14403 1.38341 1.32180 1.15805 0.83004 0.79271 0.80890 1.91038 1.29143 1.69368 1.51267 1.45466 1.14674 1.42092 1.36033 1.21147 0.83186 0.96304 0.95508 1.21669 0.99167 1.02494 0.91597 1.21689 0.94017 0.99229 1.01692 1.21505 1.00578 0.96871 0.96398 1.21772 0.95033 1.02894 0.96580 1.21257 0.96230 0.93729 0.98784 0.89345 1.21941 1.02898 1.02652 0.93938 1.20585 0.84486 0.81942 0.80189 1.90747 1.16746 1.55668 1.69150 0.94335 0.96554 0.88189 0.92389 0.84998 0.84733 0.71700 0.90826 0.89751 0.91114 0.89928 0.92021 0.91441 0.91000 0.89851 0.91369 0.91735 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.33 37.16 0.35 -3.62 16 2 C 0.22 5.93 2.56 -27.88 -0.07 5.86 16 3 H 0.05 1.41 7.15 -51.93 -0.37 1.04 16 4 C -0.52 -14.84 8.90 -34.44 -0.31 -15.14 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 O -0.35 -8.42 9.86 -39.27 -0.39 -8.81 16 13 C 0.44 9.34 8.00 36.01 0.29 9.63 16 14 O -0.51 -12.02 14.96 -18.75 -0.28 -12.30 16 15 C 0.12 1.89 6.30 -5.20 -0.03 1.86 16 16 N -0.56 -8.32 2.10 -122.10 -0.26 -8.57 16 17 C 0.71 10.43 8.54 -87.82 -0.75 9.68 16 18 O -0.54 -9.72 17.48 5.33 0.09 -9.63 16 19 N -0.72 -7.37 5.12 -53.88 -0.28 -7.64 16 20 C 0.13 1.28 0.76 -133.11 -0.10 1.18 16 21 C -0.11 -0.79 5.11 -26.95 -0.14 -0.93 16 22 C -0.13 -0.94 5.67 -26.69 -0.15 -1.10 16 23 C -0.12 -0.82 5.90 -26.73 -0.16 -0.98 16 24 C -0.12 -1.15 4.95 -26.68 -0.13 -1.28 16 25 C -0.08 -0.76 2.29 -90.84 -0.21 -0.97 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 C -0.16 -2.00 8.66 37.16 0.32 -1.68 16 28 C 0.54 7.29 5.12 -10.70 -0.05 7.24 16 29 O -0.45 -6.81 13.80 5.60 0.08 -6.74 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 1.68 8.01 -51.93 -0.42 1.26 16 35 H 0.13 1.85 7.86 -51.93 -0.41 1.44 16 36 H 0.44 3.23 8.96 -40.82 -0.37 2.87 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.79 6.08 -51.93 -0.32 0.47 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.99 6.08 -51.93 -0.32 0.68 16 45 H 0.07 1.12 6.45 -51.93 -0.33 0.79 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -34.16 374.70 -8.03 -42.19 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.01 Total: 3.06 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -1.24 Total: 11.40 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.10 Total: -41.12 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.50 Total: -37.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.16 -8.03 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.372 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds