Wall clock time and date at job start Tue Mar 31 2020 21:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 C 1.50696 * 109.47276 * 240.00407 * 2 1 3 5 5 H 1.08001 * 119.99757 * 240.00063 * 4 2 1 6 6 C 1.37878 * 120.00506 * 59.99410 * 4 2 1 7 7 N 1.31512 * 119.99642 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00125 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47163 * 90.00169 * 8 6 4 10 10 H 1.48499 * 109.47037 * 210.00250 * 8 6 4 11 11 H 1.48504 * 109.47126 * 329.99865 * 8 6 4 12 12 O 1.45196 * 109.47051 * 119.99953 * 2 1 3 13 13 C 1.34234 * 116.99938 * 270.00261 * 12 2 1 14 14 O 1.20826 * 119.99712 * 359.72483 * 13 12 2 15 15 C 1.50700 * 120.00068 * 180.02562 * 13 12 2 16 16 N 1.46497 * 109.47128 * 179.97438 * 15 13 12 17 17 C 1.33862 * 124.19817 * 269.70270 * 16 15 13 18 18 O 1.21540 * 123.78911 * 0.02562 * 17 16 15 19 19 N 1.34680 * 112.42315 * 179.83859 * 17 16 15 20 20 C 1.46827 * 106.42206 * 0.40223 * 19 17 16 21 21 C 1.52476 * 110.54899 * 118.28712 * 20 19 17 22 22 C 1.53088 * 109.51830 * 181.61907 * 21 20 19 23 23 C 1.53001 * 109.42128 * 300.84188 * 22 21 20 24 24 C 1.53000 * 109.57242 * 60.39310 * 23 22 21 25 25 C 1.52480 * 110.54787 * 241.25180 * 20 19 17 26 26 H 1.09000 * 109.46279 * 298.38686 * 25 20 19 27 27 C 1.53000 * 109.46309 * 58.36659 * 25 20 19 28 28 C 1.34917 * 124.19165 * 90.00120 * 16 15 13 29 29 O 1.21230 * 127.25649 * 0.02562 * 28 16 15 30 30 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47394 * 300.00082 * 1 2 3 32 32 H 1.08999 * 109.47287 * 60.00672 * 1 2 3 33 33 H 0.97004 * 119.99898 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47012 * 300.00044 * 15 13 12 35 35 H 1.08999 * 109.46550 * 59.99877 * 15 13 12 36 36 H 0.97004 * 126.79425 * 180.15144 * 19 17 16 37 37 H 1.09000 * 109.46392 * 301.63838 * 21 20 19 38 38 H 1.09005 * 109.46051 * 61.60737 * 21 20 19 39 39 H 1.09002 * 109.48190 * 180.85424 * 22 21 20 40 40 H 1.09004 * 109.47806 * 60.81936 * 22 21 20 41 41 H 1.09000 * 109.44780 * 300.36150 * 23 22 21 42 42 H 1.09000 * 109.43911 * 180.41379 * 23 22 21 43 43 H 1.08999 * 109.48117 * 179.62249 * 24 23 22 44 44 H 1.08998 * 109.48046 * 59.58139 * 24 23 22 45 45 H 1.09005 * 109.47205 * 59.99691 * 27 25 20 46 46 H 1.08999 * 109.47531 * 180.02562 * 27 25 20 47 47 H 1.09001 * 109.47189 * 300.00633 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.3430 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6295 -1.7581 -3.7122 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0641 2.2811 14 8 2.0024 1.2527 2.2490 15 6 2.7193 -0.5769 3.5492 16 7 2.8581 0.4440 4.5906 17 6 3.9750 1.1489 4.8091 18 8 4.9957 1.0154 4.1630 19 7 3.8393 2.0253 5.8227 20 6 2.4709 1.8645 6.3301 21 6 2.4897 1.4132 7.7864 22 6 1.0539 1.2142 8.2788 23 6 0.2831 2.5290 8.1442 24 6 0.2546 2.9584 6.6759 25 6 1.6876 3.1639 6.1780 26 1 2.1670 3.9478 6.7643 27 6 1.6611 3.5736 4.7041 28 6 1.8780 0.7864 5.4522 29 8 0.7581 0.3257 5.5106 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 0.7086 1.1612 -3.4844 34 1 2.0105 -1.3371 3.8773 35 1 3.6884 -1.0398 3.3631 36 1 4.5135 2.6387 6.1545 37 1 3.0354 0.4731 7.8683 38 1 2.9807 2.1722 8.3955 39 1 1.0675 0.9062 9.3243 40 1 0.5674 0.4447 7.6792 41 1 0.7738 3.2998 8.7385 42 1 -0.7372 2.3896 8.5015 43 1 -0.3006 3.8916 6.5809 44 1 -0.2298 2.1847 6.0803 45 1 1.1820 2.7896 4.1175 46 1 1.1016 4.5026 4.5951 47 1 2.6813 3.7205 4.3494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:24 Heat of formation + Delta-G solvation = -162.732243 kcal Electronic energy + Delta-G solvation = -31578.903339 eV Core-core repulsion = 27340.362865 eV Total energy + Delta-G solvation = -4238.540474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06684 -41.36885 -40.22351 -38.94237 -37.74968 -37.09652 -35.44608 -35.32269 -33.68564 -31.94773 -30.70967 -30.09948 -27.56314 -27.49750 -25.22220 -24.40196 -23.33558 -22.71669 -22.27533 -21.49400 -20.34249 -19.27967 -19.17822 -18.71011 -17.94566 -17.65736 -17.13591 -17.00337 -16.77154 -16.59422 -16.11970 -15.96145 -15.77596 -15.20078 -14.95727 -14.65831 -14.57072 -14.46270 -14.08675 -14.01283 -13.87789 -13.58800 -13.20268 -13.17585 -13.05813 -12.84227 -12.83647 -12.75599 -12.45479 -12.22739 -12.19824 -12.09092 -11.87669 -11.79276 -11.66076 -11.52883 -11.28166 -11.08841 -10.98732 -10.82554 -10.63667 -10.41644 -8.32531 -6.49953 0.47762 0.82276 1.13521 1.40006 1.42560 1.53388 1.64587 2.03392 2.13101 2.39471 2.76503 2.98212 3.32060 3.50306 3.69207 3.72276 3.88552 4.02305 4.08451 4.11398 4.22259 4.28707 4.35985 4.44536 4.46138 4.49697 4.61153 4.71127 4.73093 4.75989 4.82030 4.92417 5.03004 5.06093 5.14818 5.19868 5.27122 5.32738 5.36754 5.43478 5.55429 5.55944 5.72469 5.83894 5.87357 5.99469 6.25519 6.53372 6.79561 6.98431 7.21304 8.75353 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.003046 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.325306 B = 9189.260096 C = 9596.579761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.220 3.780 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.265 1.265 12 O -0.357 6.357 13 C 0.432 3.568 14 O -0.538 6.538 15 C 0.130 3.870 16 N -0.571 5.571 17 C 0.704 3.296 18 O -0.577 6.577 19 N -0.694 5.694 20 C 0.135 3.865 21 C -0.105 4.105 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.074 4.074 26 H 0.129 0.871 27 C -0.154 4.154 28 C 0.530 3.470 29 O -0.474 6.474 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.271 0.729 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.454 0.546 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.023 0.977 46 H 0.075 0.925 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 3.329 26.796 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.272 6.272 13 C 0.274 3.726 14 O -0.429 6.429 15 C 0.007 3.993 16 N -0.317 5.317 17 C 0.404 3.596 18 O -0.453 6.453 19 N -0.359 5.359 20 C 0.045 3.955 21 C -0.143 4.143 22 C -0.166 4.166 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.093 4.093 26 H 0.147 0.853 27 C -0.212 4.212 28 C 0.319 3.681 29 O -0.344 6.344 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.302 0.698 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.094 0.906 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.755 3.409 26.228 26.506 hybrid contribution 0.285 0.145 -1.583 1.615 sum 2.040 3.554 24.644 24.983 Atomic orbital electron populations 1.21968 0.96604 1.00517 1.00647 1.20371 0.92023 0.91984 0.78913 0.97730 1.21307 1.33609 1.14053 0.89830 0.91214 1.25871 0.94651 0.95656 1.02232 1.70021 1.36523 1.23644 1.25298 0.85140 0.79060 0.78110 0.76859 1.18946 1.20265 1.18938 1.86453 1.76082 1.43480 1.21229 1.24529 0.74513 0.86349 0.87178 1.90591 1.49401 1.17957 1.84945 1.21183 1.07707 0.89253 0.81194 1.46184 1.15095 1.38486 1.31968 1.16005 0.82373 0.79762 0.81413 1.91005 1.30538 1.70792 1.52972 1.45380 1.15236 1.40832 1.34403 1.21348 0.82247 0.95254 0.96625 1.21756 0.99536 1.03827 0.89177 1.21695 0.93759 0.98648 1.02536 1.21503 1.01216 0.97400 0.94705 1.21757 0.94400 1.02287 0.97853 1.21322 0.96941 0.94293 0.96748 0.85275 1.21897 1.01596 1.01704 0.95958 1.21324 0.84066 0.82422 0.80250 1.90739 1.17440 1.56454 1.69725 0.93285 0.96195 0.89966 0.91933 0.82097 0.82818 0.69773 0.90494 0.86081 0.88720 0.92782 0.89202 0.91189 0.90039 0.93400 0.95819 0.90640 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 2 C 0.22 12.57 2.56 29.85 0.08 12.64 16 3 H 0.00 0.31 7.15 -2.39 -0.02 0.30 16 4 C -0.55 -32.14 8.90 25.60 0.23 -31.91 16 5 H 0.07 3.97 7.81 -2.91 -0.02 3.94 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 8 Si 0.99 43.76 29.54 68.60 2.03 45.79 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 O -0.36 -17.79 9.86 -51.46 -0.51 -18.30 16 13 C 0.43 19.10 8.00 71.24 0.57 19.67 16 14 O -0.54 -27.00 14.96 21.96 0.33 -26.67 16 15 C 0.13 4.07 6.30 85.63 0.54 4.61 16 16 N -0.57 -17.03 2.10 -777.33 -1.63 -18.66 16 17 C 0.70 20.60 8.54 179.37 1.53 22.13 16 18 O -0.58 -21.25 17.48 -3.84 -0.07 -21.31 16 19 N -0.69 -13.04 5.12 -442.70 -2.27 -15.31 16 20 C 0.14 2.43 0.76 2.59 0.00 2.43 16 21 C -0.10 -1.11 5.11 30.45 0.16 -0.95 16 22 C -0.13 -1.50 5.67 30.62 0.17 -1.32 16 23 C -0.11 -1.20 5.90 30.59 0.18 -1.02 16 24 C -0.12 -2.09 4.95 30.63 0.15 -1.94 16 25 C -0.07 -1.24 2.29 -10.93 -0.03 -1.27 16 26 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 27 C -0.15 -3.96 8.66 71.98 0.62 -3.33 16 28 C 0.53 14.27 5.12 87.78 0.45 14.72 16 29 O -0.47 -14.55 13.80 -2.88 -0.04 -14.59 16 30 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 4.69 6.07 -2.39 -0.01 4.67 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.16 4.06 8.01 -2.39 -0.02 4.04 16 35 H 0.15 4.23 7.86 -2.39 -0.02 4.21 16 36 H 0.45 5.49 8.96 -92.71 -0.83 4.66 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.97 6.08 -2.38 -0.01 0.95 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.16 6.08 -2.39 -0.01 1.14 16 45 H 0.02 0.80 6.45 -2.38 -0.02 0.79 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.05 1.31 7.60 -2.39 -0.02 1.29 16 Total: -1.00 -79.34 374.70 4.03 -75.31 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.17 Total: 18.31 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 5.78 Total: 29.00 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.66 Total: -87.54 kcal Atomic # 8 Polarization: -80.59 SS G_CDS: -0.29 Total: -80.87 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.34 4.03 -75.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.421 kcal (2) G-P(sol) polarization free energy of solvation -79.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds