Wall clock time and date at job start Tue Mar 31 2020 21:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 O 1.45200 * 109.47003 * 119.99974 * 2 1 3 13 13 C 1.34234 * 116.99857 * 270.00226 * 12 2 1 14 14 O 1.20823 * 120.00331 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99706 * 179.97438 * 13 12 2 16 16 N 1.46507 * 109.47069 * 179.97438 * 15 13 12 17 17 C 1.33860 * 124.19133 * 90.02411 * 16 15 13 18 18 O 1.21540 * 123.79426 * 359.97438 * 17 16 15 19 19 N 1.34675 * 112.42167 * 179.97438 * 17 16 15 20 20 C 1.46858 * 106.42128 * 0.02562 * 19 17 16 21 21 C 1.52474 * 110.48343 * 241.45018 * 20 19 17 22 22 C 1.53081 * 109.58104 * 178.67257 * 21 20 19 23 23 C 1.52996 * 109.42529 * 59.14070 * 22 21 20 24 24 C 1.53014 * 109.50742 * 299.52666 * 23 22 21 25 25 C 1.52469 * 110.48616 * 118.54358 * 20 19 17 26 26 H 1.08993 * 109.45946 * 61.29976 * 25 20 19 27 27 C 1.53005 * 109.45163 * 301.36374 * 25 20 19 28 28 C 1.34914 * 124.19731 * 269.72731 * 16 15 13 29 29 O 1.21230 * 127.25219 * 0.03619 * 28 16 15 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47541 * 299.99778 * 15 13 12 35 35 H 1.08999 * 109.47468 * 59.99981 * 15 13 12 36 36 H 0.96998 * 126.79038 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.45386 * 298.70244 * 21 20 19 38 38 H 1.08991 * 109.45162 * 58.65409 * 21 20 19 39 39 H 1.09005 * 109.47630 * 179.12614 * 22 21 20 40 40 H 1.09003 * 109.47379 * 299.15037 * 22 21 20 41 41 H 1.08994 * 109.47089 * 59.54205 * 23 22 21 42 42 H 1.09004 * 109.46054 * 179.53050 * 23 22 21 43 43 H 1.09003 * 109.47853 * 180.46057 * 24 23 22 44 44 H 1.09001 * 109.48319 * 300.49285 * 24 23 22 45 45 H 1.08998 * 109.46839 * 60.00260 * 27 25 20 46 46 H 1.08999 * 109.47394 * 180.02562 * 27 25 20 47 47 H 1.09005 * 109.47246 * 300.00526 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0641 2.2812 14 8 1.9982 1.2519 2.2504 15 6 2.7182 -0.5772 3.5495 16 7 2.8573 0.4438 4.5910 17 6 1.8848 0.7840 5.4456 18 8 0.7790 0.2795 5.4469 19 7 2.2691 1.7481 6.3038 20 6 3.6604 2.0745 5.9655 21 6 4.5794 1.7822 7.1465 22 6 6.0268 2.0981 6.7608 23 6 6.1366 3.5705 6.3597 24 6 5.2281 3.8421 5.1588 25 6 3.7774 3.5334 5.5382 26 1 3.4725 4.1787 6.3620 27 6 2.8707 3.7853 4.3317 28 6 3.9832 1.1537 4.8113 29 8 5.0319 1.0722 4.2086 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7083 1.1609 -3.4845 34 1 2.0086 -1.3369 3.8775 35 1 3.6870 -1.0409 3.3641 36 1 1.7328 2.1483 7.0060 37 1 4.2870 2.3999 7.9956 38 1 4.4978 0.7298 7.4181 39 1 6.6803 1.9033 7.6112 40 1 6.3247 1.4695 5.9216 41 1 5.8306 4.1987 7.1961 42 1 7.1687 3.7981 6.0929 43 1 5.3129 4.8893 4.8683 44 1 5.5285 3.2078 4.3248 45 1 1.8375 3.5675 4.6021 46 1 2.9544 4.8281 4.0257 47 1 3.1745 3.1396 3.5077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:26 Heat of formation + Delta-G solvation = -162.748469 kcal Electronic energy + Delta-G solvation = -31575.061258 eV Core-core repulsion = 27336.520080 eV Total energy + Delta-G solvation = -4238.541178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.06510 -41.36863 -40.21812 -38.95029 -37.74978 -37.09146 -35.44564 -35.32293 -33.68842 -31.94653 -30.71296 -30.09974 -27.56501 -27.49567 -25.21768 -24.41311 -23.32812 -22.71658 -22.28189 -21.50020 -20.33891 -19.27877 -19.18970 -18.65993 -17.95678 -17.72608 -17.11475 -16.95196 -16.75149 -16.62536 -16.12069 -15.97196 -15.77473 -15.20610 -14.95589 -14.66747 -14.57835 -14.45818 -14.08478 -14.01600 -13.86668 -13.58561 -13.21997 -13.15980 -13.04925 -12.85104 -12.84170 -12.76297 -12.43926 -12.22630 -12.20287 -12.08211 -11.88258 -11.80069 -11.65976 -11.52900 -11.28456 -11.09480 -10.98623 -10.83218 -10.63324 -10.41689 -8.31973 -6.49717 0.47655 0.82665 1.13679 1.40243 1.44646 1.52284 1.64446 2.03230 2.13035 2.39792 2.76539 2.98662 3.31961 3.49963 3.69283 3.72459 3.88139 4.02218 4.08171 4.11098 4.22221 4.28469 4.35892 4.44203 4.45963 4.49370 4.60789 4.71652 4.72793 4.76235 4.81758 4.92167 5.02586 5.05933 5.14514 5.19425 5.26829 5.32340 5.36444 5.43362 5.55259 5.55644 5.72639 5.83747 5.87293 5.99588 6.25597 6.53447 6.79556 6.98683 7.21524 8.75702 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003162 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.257871 B = 8851.701899 C = 9362.230595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.221 3.779 3 H 0.006 0.994 4 C -0.551 4.551 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.268 1.268 12 O -0.357 6.357 13 C 0.432 3.568 14 O -0.538 6.538 15 C 0.130 3.870 16 N -0.571 5.571 17 C 0.704 3.296 18 O -0.576 6.576 19 N -0.694 5.694 20 C 0.136 3.864 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.073 4.073 26 H 0.130 0.870 27 C -0.154 4.154 28 C 0.529 3.471 29 O -0.475 6.475 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.018 0.982 33 H 0.272 0.728 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.454 0.546 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 4.679 24.508 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.272 6.272 13 C 0.274 3.726 14 O -0.429 6.429 15 C 0.007 3.993 16 N -0.318 5.318 17 C 0.405 3.595 18 O -0.452 6.452 19 N -0.358 5.358 20 C 0.046 3.954 21 C -0.143 4.143 22 C -0.167 4.167 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.093 4.093 26 H 0.148 0.852 27 C -0.211 4.211 28 C 0.318 3.682 29 O -0.345 6.345 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.303 0.697 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.387 4.772 23.916 26.132 hybrid contribution -0.567 -0.013 -1.330 1.446 sum 8.821 4.759 22.586 24.710 Atomic orbital electron populations 1.21978 0.96774 1.00485 1.00607 1.20367 0.91937 0.92008 0.78912 0.97658 1.21276 1.33696 1.14103 0.89784 0.91132 1.25874 0.94616 0.95646 1.02233 1.70016 1.36452 1.23672 1.25367 0.85194 0.78795 0.78662 0.76532 1.18651 1.20161 1.19263 1.86454 1.76067 1.43475 1.21251 1.24526 0.74612 0.86324 0.87108 1.90591 1.49331 1.18052 1.84915 1.21185 1.07752 0.89426 0.80974 1.46190 1.15273 1.38853 1.31443 1.15985 0.82967 0.80884 0.79636 1.90998 1.20664 1.59362 1.74177 1.45384 1.14441 1.39466 1.36539 1.21336 0.83410 0.96049 0.94632 1.21751 0.93755 1.03904 0.94878 1.21694 0.95171 0.97449 1.02355 1.21506 0.99574 0.96214 0.97517 1.21758 0.92815 1.02313 0.99454 1.21314 0.96966 0.91617 0.99364 0.85172 1.21898 0.99408 1.02353 0.97491 1.21341 0.82329 0.79889 0.84605 1.90747 1.25847 1.65592 1.52289 0.89916 0.93340 0.96327 0.91925 0.82555 0.82368 0.69739 0.86018 0.90488 0.88699 0.92874 0.89108 0.91237 0.90045 0.93564 0.93273 0.90669 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.61 9.33 71.98 0.67 -6.93 16 2 C 0.22 12.61 2.56 29.85 0.08 12.68 16 3 H 0.01 0.36 7.16 -2.39 -0.02 0.34 16 4 C -0.55 -32.04 8.90 25.60 0.23 -31.82 16 5 H 0.07 3.98 7.81 -2.91 -0.02 3.95 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.55 16 8 Si 0.99 43.53 29.54 68.60 2.03 45.56 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 O -0.36 -17.79 9.86 -51.46 -0.51 -18.30 16 13 C 0.43 19.11 8.00 71.24 0.57 19.68 16 14 O -0.54 -27.01 14.96 21.97 0.33 -26.68 16 15 C 0.13 4.07 6.30 85.63 0.54 4.61 16 16 N -0.57 -17.04 2.10 -777.33 -1.63 -18.67 16 17 C 0.70 20.31 8.54 179.37 1.53 21.84 16 18 O -0.58 -20.66 17.49 -3.84 -0.07 -20.73 16 19 N -0.69 -12.84 5.12 -442.70 -2.27 -15.11 16 20 C 0.14 2.46 0.75 2.58 0.00 2.46 16 21 C -0.10 -1.13 5.09 30.45 0.16 -0.97 16 22 C -0.13 -1.55 5.67 30.62 0.17 -1.38 16 23 C -0.11 -1.24 5.91 30.60 0.18 -1.06 16 24 C -0.13 -2.17 4.96 30.63 0.15 -2.02 16 25 C -0.07 -1.25 2.29 -10.94 -0.03 -1.28 16 26 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 27 C -0.15 -3.99 8.65 71.98 0.62 -3.37 16 28 C 0.53 14.48 5.14 87.77 0.45 14.93 16 29 O -0.48 -15.05 13.84 -2.88 -0.04 -15.09 16 30 H 0.08 4.75 6.07 -2.39 -0.01 4.73 16 31 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.16 4.19 7.86 -2.39 -0.02 4.17 16 35 H 0.16 4.11 8.00 -2.39 -0.02 4.09 16 36 H 0.45 5.31 8.96 -92.71 -0.83 4.48 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.05 0.99 6.09 -2.39 -0.01 0.97 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.16 6.13 -2.39 -0.01 1.14 16 45 H 0.05 1.34 7.61 -2.39 -0.02 1.32 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.02 0.77 6.46 -2.38 -0.02 0.76 16 Total: -1.00 -79.17 374.82 4.03 -75.14 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.17 Total: 18.69 kcal Atomic # 6 Polarization: 22.97 SS G_CDS: 5.78 Total: 28.75 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -3.66 Total: -87.34 kcal Atomic # 8 Polarization: -80.52 SS G_CDS: -0.29 Total: -80.80 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.17 4.03 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.607 kcal (2) G-P(sol) polarization free energy of solvation -79.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds