Wall clock time and date at job start Tue Mar 31 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.48481 * 2 1 4 4 C 1.53097 * 109.47989 * 239.96837 * 2 1 3 5 5 C 1.53178 * 109.16320 * 182.40692 * 4 2 1 6 6 H 1.08996 * 109.54349 * 297.11136 * 5 4 2 7 7 C 1.50705 * 109.54146 * 176.84585 * 5 4 2 8 8 O 1.20818 * 120.00155 * 0.02562 * 7 5 4 9 9 O 1.34231 * 119.99827 * 180.02562 * 7 5 4 10 10 C 1.45196 * 116.99867 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47108 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99567 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99949 * 179.97438 * 11 10 9 14 14 C 1.46511 * 119.99779 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47095 * 90.00162 * 14 13 11 16 16 H 1.08001 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00076 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47154 * 59.99990 * 19 17 15 21 21 H 1.48500 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47004 * 300.00253 * 19 17 15 23 23 C 1.46501 * 120.00487 * 359.97438 * 13 11 10 24 24 C 1.53004 * 109.46799 * 90.00076 * 23 13 11 25 25 C 1.47195 * 109.47000 * 180.02562 * 24 23 13 26 26 N 8.97339 * 147.70192 * 191.65357 * 4 1 2 27 27 C 1.53207 * 109.03992 * 56.98185 * 5 4 2 28 28 C 1.53092 * 109.14859 * 303.02293 * 27 5 4 29 29 O 1.42898 * 109.48206 * 120.02540 * 2 1 3 30 30 H 1.09000 * 109.46667 * 299.97721 * 1 2 3 31 31 H 1.08997 * 109.46773 * 59.97137 * 1 2 3 32 32 H 1.09001 * 109.46814 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.51867 * 302.31556 * 4 2 1 34 34 H 1.09005 * 109.52093 * 62.43541 * 4 2 1 35 35 H 1.09001 * 109.47142 * 299.99644 * 10 9 7 36 36 H 1.09001 * 109.47475 * 60.00048 * 10 9 7 37 37 H 1.09000 * 109.46684 * 209.99959 * 14 13 11 38 38 H 1.08996 * 109.47062 * 329.99664 * 14 13 11 39 39 H 0.96996 * 119.99784 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47625 * 209.99795 * 23 13 11 41 41 H 1.09000 * 109.46698 * 330.00861 * 23 13 11 42 42 H 1.09008 * 109.46855 * 300.00346 * 24 23 13 43 43 H 1.08997 * 109.47209 * 60.00201 * 24 23 13 44 44 H 1.08999 * 109.53319 * 183.11811 * 27 5 4 45 45 H 1.08992 * 109.51748 * 62.92028 * 27 5 4 46 46 H 1.09002 * 109.48343 * 297.61643 * 28 27 5 47 47 H 1.08999 * 109.47546 * 177.59237 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2496 5 6 3.5711 -0.7709 -1.2122 6 1 3.9689 0.2434 -1.2410 7 6 4.0800 -1.5478 -2.3991 8 8 3.3000 -2.0150 -3.1948 9 8 5.3998 -1.7206 -2.5724 10 6 5.8179 -2.4789 -3.7379 11 6 7.3220 -2.5679 -3.7661 12 8 7.9770 -2.0443 -2.8899 13 7 7.9392 -3.2303 -4.7645 14 6 9.4015 -3.3173 -4.7916 15 6 9.8455 -4.5462 -4.0408 16 1 9.1120 -5.1970 -3.5883 17 6 11.1883 -4.8390 -3.9307 18 7 12.0816 -4.0462 -4.4813 19 14 11.7389 -6.3619 -2.9995 20 1 11.1596 -7.5700 -3.6398 21 1 13.2211 -6.4495 -3.0261 22 1 11.2737 -6.2765 -1.5918 23 6 7.1480 -3.8642 -5.8220 24 6 6.9296 -2.8678 -6.9623 25 6 6.1341 -3.5045 -8.0246 26 7 5.5214 -3.9947 -8.8454 27 6 4.0179 -1.4602 0.0811 28 6 3.4308 -0.7092 1.2790 29 8 2.0066 -0.6741 1.1664 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6442 -1.7376 -1.2708 34 1 1.7138 -0.1851 -2.1399 35 1 5.3950 -3.4823 -3.6894 36 1 5.4668 -1.9799 -4.6411 37 1 9.7425 -3.3798 -5.8250 38 1 9.8270 -2.4307 -4.3216 39 1 13.0262 -4.2520 -4.4035 40 1 7.6795 -4.7376 -6.1995 41 1 6.1832 -4.1721 -5.4188 42 1 6.3979 -1.9943 -6.5847 43 1 7.8943 -2.5598 -7.3655 44 1 5.1061 -1.4499 0.1424 45 1 3.6615 -2.4902 0.0866 46 1 3.8193 0.3090 1.2957 47 1 3.7101 -1.2200 2.2005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776405949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:35 Heat of formation + Delta-G solvation = -149.436140 kcal Electronic energy + Delta-G solvation = -29303.879496 eV Core-core repulsion = 25065.915584 eV Total energy + Delta-G solvation = -4237.963912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00770 -39.65363 -39.02374 -36.97272 -36.47931 -35.31461 -34.15652 -33.12708 -32.96945 -30.94977 -29.48492 -28.27872 -26.92515 -25.37374 -24.12788 -23.18017 -22.75813 -21.41372 -20.32300 -18.91708 -17.92246 -17.75432 -16.88210 -16.80064 -16.60306 -16.45232 -16.24993 -15.89672 -15.26727 -15.15717 -14.79006 -14.63694 -14.39419 -14.30555 -13.91679 -13.56708 -13.31546 -12.93882 -12.79607 -12.76627 -12.63921 -12.51336 -12.26497 -12.23591 -12.14661 -11.82721 -11.71692 -11.51167 -11.35730 -11.14502 -11.09646 -11.01626 -10.88152 -10.71053 -10.67353 -10.51811 -10.25411 -9.85855 -9.80786 -9.18376 -8.52577 -8.00346 -6.14711 -4.19881 2.02153 2.30367 2.68675 2.78239 3.07092 3.27225 3.32148 3.35045 3.42662 3.55892 4.06054 4.18893 4.35209 4.35987 4.42495 4.54027 4.75529 4.78445 4.79178 4.87499 4.97134 5.02602 5.05993 5.10503 5.12048 5.17988 5.21044 5.29924 5.33554 5.39612 5.41792 5.55235 5.64997 5.72926 5.77190 5.80674 5.90181 5.97655 6.24856 6.79590 6.89970 7.22646 7.30507 7.53781 7.58455 7.80668 8.05770 8.09550 8.67564 8.85655 9.45881 10.93430 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.002757 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.851225 B =10151.833812 C =12229.685457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.061 0.939 4 C -0.135 4.135 5 C -0.080 4.080 6 H 0.112 0.888 7 C 0.466 3.534 8 O -0.508 6.508 9 O -0.326 6.326 10 C 0.045 3.955 11 C 0.509 3.491 12 O -0.509 6.509 13 N -0.592 5.592 14 C 0.247 3.753 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.112 3.888 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 C -0.151 4.151 28 C 0.065 3.935 29 O -0.380 6.380 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.503 9.112 5.816 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.079 0.921 4 C -0.173 4.173 5 C -0.099 4.099 6 H 0.130 0.870 7 C 0.309 3.691 8 O -0.396 6.396 9 O -0.241 6.241 10 C -0.033 4.033 11 C 0.294 3.706 12 O -0.383 6.383 13 N -0.325 5.325 14 C 0.128 3.872 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.014 4.014 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.119 5.119 27 C -0.189 4.189 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.154 8.454 4.920 21.507 hybrid contribution 0.871 -0.730 0.250 1.164 sum -18.283 7.724 5.170 20.510 Atomic orbital electron populations 1.21757 0.92676 1.03210 1.02544 1.22107 0.95416 0.94970 0.84555 0.92084 1.22189 0.92298 1.03611 0.99166 1.21112 0.96958 1.00359 0.91503 0.87038 1.23681 0.80626 0.78209 0.86600 1.90664 1.57158 1.46965 1.44849 1.86568 1.25033 1.67217 1.45277 1.23000 0.95318 0.97369 0.87573 1.19730 0.87686 0.80173 0.83026 1.90740 1.66274 1.45398 1.35938 1.48167 1.09792 1.52035 1.22508 1.19420 0.71100 0.98628 0.98014 1.21357 0.92073 1.08748 1.34938 0.92346 1.24910 0.96446 0.97029 0.95495 1.69905 1.01577 1.37399 1.44245 0.86559 0.77476 0.82864 0.80550 1.20213 1.21153 1.20120 1.21402 0.97033 0.95537 0.87418 1.19886 0.99561 0.98960 0.90829 1.29009 0.93466 0.93642 0.94115 1.81193 1.10485 1.09159 1.11047 1.22253 1.03172 1.00672 0.92770 1.22586 0.80662 0.99839 0.98123 1.87952 1.21147 1.77956 1.42889 0.91667 0.90927 0.91623 0.89811 0.89868 0.88509 0.88731 0.94302 0.93342 0.92517 0.88159 0.90664 0.87699 0.86188 0.88589 0.90291 0.92604 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.56 37.16 0.36 -0.57 16 2 C 0.09 0.67 3.26 -26.68 -0.09 0.58 16 3 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.13 -1.16 4.02 -26.59 -0.11 -1.27 16 5 C -0.08 -0.76 2.72 -91.57 -0.25 -1.01 16 6 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.47 5.91 7.26 36.01 0.26 6.18 16 8 O -0.51 -7.31 15.72 -18.74 -0.29 -7.61 16 9 O -0.33 -4.78 9.69 -45.91 -0.44 -5.22 16 10 C 0.04 0.63 4.50 36.01 0.16 0.79 16 11 C 0.51 9.28 7.75 -10.99 -0.09 9.19 16 12 O -0.51 -11.71 16.08 -14.11 -0.23 -11.93 16 13 N -0.59 -10.46 2.46 -175.05 -0.43 -10.89 16 14 C 0.25 5.64 5.16 -5.19 -0.03 5.61 16 15 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.60 15.43 -20.78 -0.32 2.28 16 26 N -0.44 -6.53 18.53 42.13 0.78 -5.75 16 27 C -0.15 -1.37 5.36 -26.58 -0.14 -1.51 16 28 C 0.06 0.50 6.84 37.20 0.25 0.76 16 29 O -0.38 -3.57 10.41 -35.23 -0.37 -3.94 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.23 7.39 -51.93 -0.38 0.85 16 36 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 37 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 38 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 42 H 0.10 0.87 7.22 -51.92 -0.37 0.49 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -33.99 400.43 -7.14 -41.13 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.30 Total: -2.63 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.60 Total: 9.19 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.09 Total: -40.86 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.33 Total: -28.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.99 -7.14 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.306 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds