Wall clock time and date at job start Tue Mar 31 2020 21:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47745 * 2 1 4 4 C 1.53095 * 109.48046 * 239.96953 * 2 1 3 5 5 C 1.53173 * 109.16329 * 297.62753 * 4 2 1 6 6 H 1.08995 * 109.54947 * 62.88633 * 5 4 2 7 7 C 1.50703 * 109.54528 * 183.06451 * 5 4 2 8 8 O 1.20831 * 119.99464 * 359.97438 * 7 5 4 9 9 O 1.34223 * 120.00396 * 179.97438 * 7 5 4 10 10 C 1.45201 * 117.00104 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46882 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99889 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47390 * 90.00040 * 14 13 11 16 16 H 1.08004 * 119.99661 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00056 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47433 * 59.99796 * 19 17 15 21 21 H 1.48494 * 109.47434 * 180.02562 * 19 17 15 22 22 H 1.48512 * 109.47089 * 300.00152 * 19 17 15 23 23 C 1.46501 * 120.00481 * 359.97438 * 13 11 10 24 24 C 1.53006 * 109.47091 * 89.99735 * 23 13 11 25 25 C 1.47197 * 109.47233 * 180.02562 * 24 23 13 26 26 N 8.97341 * 152.56376 * 160.79535 * 4 1 2 27 27 C 1.53177 * 109.04588 * 303.02563 * 5 4 2 28 28 C 1.53092 * 109.16443 * 56.96276 * 27 5 4 29 29 O 1.42901 * 109.48028 * 120.02731 * 2 1 3 30 30 H 1.08999 * 109.47526 * 299.97352 * 1 2 3 31 31 H 1.09005 * 109.47163 * 59.97342 * 1 2 3 32 32 H 1.09003 * 109.47395 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52141 * 57.52985 * 4 2 1 34 34 H 1.09000 * 109.52256 * 177.65799 * 4 2 1 35 35 H 1.08998 * 109.47151 * 300.00195 * 10 9 7 36 36 H 1.08996 * 109.47095 * 60.00196 * 10 9 7 37 37 H 1.09003 * 109.46781 * 210.00275 * 14 13 11 38 38 H 1.09003 * 109.46977 * 329.99346 * 14 13 11 39 39 H 0.96998 * 120.00328 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.47454 * 210.00200 * 23 13 11 41 41 H 1.09002 * 109.46810 * 330.00259 * 23 13 11 42 42 H 1.09005 * 109.46991 * 300.00928 * 24 23 13 43 43 H 1.09002 * 109.46866 * 60.00558 * 24 23 13 44 44 H 1.09004 * 109.51365 * 297.06592 * 27 5 4 45 45 H 1.08998 * 109.53811 * 176.88037 * 27 5 4 46 46 H 1.09002 * 109.48343 * 182.42096 * 28 27 5 47 47 H 1.08999 * 109.47546 * 62.39689 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5757 -2.1813 -1.2121 6 1 0.4868 -2.2180 -1.2408 7 6 2.1364 -2.9198 -2.4002 8 8 2.8359 -2.3399 -3.1967 9 8 1.8586 -4.2214 -2.5736 10 6 2.4321 -4.8681 -3.7404 11 6 2.0141 -6.3157 -3.7686 12 8 1.3033 -6.7589 -2.8915 13 7 2.4310 -7.1181 -4.7680 14 6 2.0251 -8.5255 -4.7951 15 6 0.7354 -8.6617 -5.5626 16 1 0.2653 -7.7874 -5.9880 17 6 0.1561 -9.9026 -5.7226 18 7 0.7288 -10.9674 -5.2051 19 14 -1.4429 -10.0713 -6.6733 20 1 -1.2465 -9.5853 -8.0627 21 1 -1.8543 -11.4979 -6.7010 22 1 -2.4997 -9.2646 -6.0116 23 6 3.2901 -6.5830 -5.8271 24 6 4.7574 -6.7484 -5.4261 25 6 5.6206 -6.2103 -6.4900 26 7 6.2879 -5.7967 -7.3103 27 6 2.0762 -2.8324 0.0809 28 6 1.5645 -2.0284 1.2791 29 8 2.0066 -0.6742 1.1664 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6421 -0.2358 -2.1399 34 1 3.1298 -0.6865 -1.2715 35 1 2.0775 -4.3702 -4.6428 36 1 3.5192 -4.8043 -3.6935 37 1 2.8009 -9.1181 -5.2801 38 1 1.8804 -8.8817 -3.7751 39 1 0.3215 -11.8404 -5.3179 40 1 3.1037 -7.1245 -6.7545 41 1 3.0705 -5.5254 -5.9735 42 1 4.9438 -6.2070 -4.4986 43 1 4.9770 -7.8060 -5.2798 44 1 3.1662 -2.8403 0.0864 45 1 1.7033 -3.8548 0.1423 46 1 1.9530 -2.4622 2.2005 47 1 0.4750 -2.0550 1.2960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776405951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:38 Heat of formation + Delta-G solvation = -146.057872 kcal Electronic energy + Delta-G solvation = -29477.588061 eV Core-core repulsion = 25239.770642 eV Total energy + Delta-G solvation = -4237.817419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08557 -39.80888 -39.07681 -36.97106 -36.47737 -35.31391 -34.18428 -32.97809 -32.58788 -30.94829 -29.50155 -28.60456 -26.92340 -25.37243 -24.12582 -23.65007 -22.85454 -21.30603 -19.61145 -18.92376 -18.12134 -17.74140 -17.15581 -16.74064 -16.53633 -16.38177 -16.29699 -15.86346 -15.42090 -14.92484 -14.80235 -14.71180 -14.34611 -14.15032 -14.03014 -13.71672 -13.37158 -13.12358 -12.96237 -12.67162 -12.64771 -12.51102 -12.27184 -12.15702 -12.13379 -11.81629 -11.79564 -11.54629 -11.35687 -11.14858 -11.09385 -11.01823 -10.73327 -10.71607 -10.65088 -10.45443 -10.25626 -9.85409 -9.80901 -9.18328 -8.52823 -8.00292 -6.14892 -4.20095 2.02587 2.30827 2.68983 2.78601 3.07308 3.26887 3.31887 3.34671 3.49560 3.57410 4.06043 4.17739 4.33816 4.36023 4.45602 4.51355 4.68317 4.75721 4.81419 4.91624 4.94158 4.97626 5.01915 5.07212 5.10876 5.15562 5.20866 5.24910 5.34180 5.39840 5.45645 5.54475 5.68942 5.71911 5.73074 5.76882 5.91855 5.97742 6.25399 6.79626 6.87160 7.22691 7.30521 7.54097 7.58773 7.80458 8.05801 8.09478 8.67564 8.85500 9.45658 10.93271 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002770 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.140233 B =10107.618864 C =11858.014573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.088 3.912 3 H 0.108 0.892 4 C -0.134 4.134 5 C -0.081 4.081 6 H 0.113 0.887 7 C 0.466 3.534 8 O -0.509 6.509 9 O -0.326 6.326 10 C 0.045 3.955 11 C 0.509 3.491 12 O -0.509 6.509 13 N -0.592 5.592 14 C 0.247 3.753 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.112 3.888 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 C -0.149 4.149 28 C 0.059 3.941 29 O -0.377 6.377 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 18.204 9.834 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.030 3.970 3 H 0.126 0.874 4 C -0.172 4.172 5 C -0.100 4.100 6 H 0.131 0.869 7 C 0.308 3.692 8 O -0.397 6.397 9 O -0.241 6.241 10 C -0.033 4.033 11 C 0.294 3.706 12 O -0.383 6.383 13 N -0.325 5.325 14 C 0.128 3.872 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.014 4.014 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.119 5.119 27 C -0.187 4.187 28 C -0.018 4.018 29 O -0.296 6.296 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.952 18.570 8.990 21.007 hybrid contribution -1.194 -0.536 -0.813 1.541 sum 2.758 18.034 8.177 19.992 Atomic orbital electron populations 1.22514 0.96175 1.03075 1.03099 1.22200 0.93618 0.96588 0.84563 0.87448 1.22139 1.03086 0.92764 0.99195 1.21129 1.02710 0.94735 0.91442 0.86907 1.23709 0.78067 0.80705 0.86684 1.90666 1.35823 1.68331 1.44856 1.86567 1.68300 1.24113 1.45120 1.22999 0.99471 0.93061 0.87730 1.19730 0.81770 0.86120 0.82994 1.90738 1.35531 1.75214 1.36858 1.48165 1.48210 1.13403 1.22723 1.19418 0.95465 0.73010 0.99259 1.21363 1.07767 0.93471 1.34574 0.92342 1.24906 0.97625 0.95622 0.95706 1.69900 1.39701 0.98899 1.44618 0.86559 0.83610 0.77089 0.80187 1.20210 1.21150 1.20129 1.21401 0.86529 1.00257 0.93198 1.19887 0.92788 1.03720 0.92845 1.29007 0.93799 0.93185 0.94240 1.81190 1.10204 1.09774 1.10715 1.22227 1.02642 1.01036 0.92802 1.22616 0.99215 0.81903 0.98039 1.88007 1.73671 1.24813 1.43064 0.91525 0.91178 0.91656 0.89839 0.89840 0.88525 0.88722 0.94307 0.93338 0.92509 0.88170 0.90667 0.87692 0.86189 0.90335 0.88696 0.88146 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 8.65 37.16 0.32 -0.85 16 2 C 0.09 0.64 3.91 -26.68 -0.10 0.54 16 3 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.13 -1.13 4.24 -26.59 -0.11 -1.24 16 5 C -0.08 -0.77 2.40 -91.59 -0.22 -0.99 16 6 H 0.11 0.94 6.62 -51.93 -0.34 0.59 16 7 C 0.47 5.90 7.26 36.01 0.26 6.16 16 8 O -0.51 -7.30 15.72 -18.75 -0.29 -7.60 16 9 O -0.33 -4.77 9.69 -45.88 -0.44 -5.22 16 10 C 0.04 0.63 4.50 36.01 0.16 0.79 16 11 C 0.51 9.27 7.75 -10.98 -0.09 9.19 16 12 O -0.51 -11.69 16.08 -14.10 -0.23 -11.92 16 13 N -0.59 -10.46 2.46 -175.05 -0.43 -10.89 16 14 C 0.25 5.64 5.16 -5.19 -0.03 5.61 16 15 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 16 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 25 C 0.22 2.61 15.43 -20.78 -0.32 2.29 16 26 N -0.44 -6.55 18.53 42.13 0.78 -5.77 16 27 C -0.15 -1.29 5.36 -26.59 -0.14 -1.43 16 28 C 0.06 0.44 6.51 37.20 0.24 0.68 16 29 O -0.38 -3.39 10.60 -35.23 -0.37 -3.76 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 4.98 -51.93 -0.26 0.15 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.10 1.22 7.39 -51.93 -0.38 0.84 16 36 H 0.09 1.08 7.18 -51.93 -0.37 0.71 16 37 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 42 H 0.11 0.87 7.22 -51.93 -0.37 0.50 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -33.94 393.46 -6.95 -40.89 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.96 Total: -2.17 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.64 Total: 8.89 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.09 Total: -40.86 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.34 Total: -28.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.94 -6.95 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.166 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds