Wall clock time and date at job start Tue Mar 31 2020 21:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47745 * 2 1 4 4 C 1.53095 * 109.48046 * 239.96953 * 2 1 3 5 5 C 1.53173 * 109.16329 * 297.62753 * 4 2 1 6 6 H 1.08995 * 109.54947 * 62.88633 * 5 4 2 7 7 C 1.50703 * 109.54528 * 183.06451 * 5 4 2 8 8 O 1.20831 * 119.99464 * 359.97438 * 7 5 4 9 9 O 1.34223 * 120.00396 * 179.97438 * 7 5 4 10 10 C 1.45201 * 117.00104 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46882 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99889 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47390 * 90.00040 * 14 13 11 16 16 H 1.08004 * 119.99661 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00056 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47433 * 59.99796 * 19 17 15 21 21 H 1.48494 * 109.47434 * 180.02562 * 19 17 15 22 22 H 1.48512 * 109.47089 * 300.00152 * 19 17 15 23 23 C 1.46501 * 120.00481 * 359.97438 * 13 11 10 24 24 C 1.53006 * 109.47091 * 89.99735 * 23 13 11 25 25 C 1.47197 * 109.47233 * 180.02562 * 24 23 13 26 26 N 8.97341 * 152.56376 * 160.79535 * 4 1 2 27 27 C 1.53177 * 109.04588 * 303.02563 * 5 4 2 28 28 C 1.53092 * 109.16443 * 56.96276 * 27 5 4 29 29 O 1.42901 * 109.48028 * 120.02731 * 2 1 3 30 30 H 1.08999 * 109.47526 * 299.97352 * 1 2 3 31 31 H 1.09005 * 109.47163 * 59.97342 * 1 2 3 32 32 H 1.09003 * 109.47395 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.52141 * 57.52985 * 4 2 1 34 34 H 1.09000 * 109.52256 * 177.65799 * 4 2 1 35 35 H 1.08998 * 109.47151 * 300.00195 * 10 9 7 36 36 H 1.08996 * 109.47095 * 60.00196 * 10 9 7 37 37 H 1.09003 * 109.46781 * 210.00275 * 14 13 11 38 38 H 1.09003 * 109.46977 * 329.99346 * 14 13 11 39 39 H 0.96998 * 120.00328 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.47454 * 210.00200 * 23 13 11 41 41 H 1.09002 * 109.46810 * 330.00259 * 23 13 11 42 42 H 1.09005 * 109.46991 * 300.00928 * 24 23 13 43 43 H 1.09002 * 109.46866 * 60.00558 * 24 23 13 44 44 H 1.09004 * 109.51365 * 297.06592 * 27 5 4 45 45 H 1.08998 * 109.53811 * 176.88037 * 27 5 4 46 46 H 1.09002 * 109.48343 * 182.42096 * 28 27 5 47 47 H 1.08999 * 109.47546 * 62.39689 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5757 -2.1813 -1.2121 6 1 0.4868 -2.2180 -1.2408 7 6 2.1364 -2.9198 -2.4002 8 8 2.8359 -2.3399 -3.1967 9 8 1.8586 -4.2214 -2.5736 10 6 2.4321 -4.8681 -3.7404 11 6 2.0141 -6.3157 -3.7686 12 8 1.3033 -6.7589 -2.8915 13 7 2.4310 -7.1181 -4.7680 14 6 2.0251 -8.5255 -4.7951 15 6 0.7354 -8.6617 -5.5626 16 1 0.2653 -7.7874 -5.9880 17 6 0.1561 -9.9026 -5.7226 18 7 0.7288 -10.9674 -5.2051 19 14 -1.4429 -10.0713 -6.6733 20 1 -1.2465 -9.5853 -8.0627 21 1 -1.8543 -11.4979 -6.7010 22 1 -2.4997 -9.2646 -6.0116 23 6 3.2901 -6.5830 -5.8271 24 6 4.7574 -6.7484 -5.4261 25 6 5.6206 -6.2103 -6.4900 26 7 6.2879 -5.7967 -7.3103 27 6 2.0762 -2.8324 0.0809 28 6 1.5645 -2.0284 1.2791 29 8 2.0066 -0.6742 1.1664 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6421 -0.2358 -2.1399 34 1 3.1298 -0.6865 -1.2715 35 1 2.0775 -4.3702 -4.6428 36 1 3.5192 -4.8043 -3.6935 37 1 2.8009 -9.1181 -5.2801 38 1 1.8804 -8.8817 -3.7751 39 1 0.3215 -11.8404 -5.3179 40 1 3.1037 -7.1245 -6.7545 41 1 3.0705 -5.5254 -5.9735 42 1 4.9438 -6.2070 -4.4986 43 1 4.9770 -7.8060 -5.2798 44 1 3.1662 -2.8403 0.0864 45 1 1.7033 -3.8548 0.1423 46 1 1.9530 -2.4622 2.2005 47 1 0.4750 -2.0550 1.2960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776405951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:37 Heat of formation + Delta-G solvation = -166.061593 kcal Electronic energy + Delta-G solvation = -29478.455487 eV Core-core repulsion = 25239.770642 eV Total energy + Delta-G solvation = -4238.684846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04369 -40.87020 -40.16432 -38.09104 -37.57693 -36.72175 -34.94676 -34.85624 -33.17520 -32.24203 -30.82711 -29.27158 -28.48215 -26.23398 -25.38299 -24.50944 -24.27155 -22.24199 -20.39524 -20.18405 -19.12998 -18.86943 -18.40454 -18.09166 -17.76284 -17.57896 -17.14616 -16.88393 -16.56122 -16.26559 -15.84363 -15.64555 -15.50467 -15.21277 -14.90881 -14.64411 -14.41373 -14.37998 -13.94719 -13.84448 -13.67659 -13.60636 -13.55707 -13.19348 -13.17867 -12.96632 -12.75065 -12.73790 -12.52106 -12.47425 -12.19245 -12.17052 -12.05909 -11.84565 -11.76366 -11.69265 -11.57330 -11.10118 -10.70961 -10.58029 -10.48422 -9.58708 -8.18403 -6.30413 1.04465 1.24317 1.41721 1.44222 1.50810 1.57648 1.78360 1.81689 2.29984 2.45127 2.94400 3.03000 3.14313 3.42626 3.54820 3.63285 3.65167 3.88394 3.90930 3.97848 4.07515 4.10310 4.13092 4.17128 4.37159 4.43581 4.48886 4.51036 4.66437 4.73138 4.78375 4.89024 4.98689 5.00163 5.03982 5.06787 5.10273 5.17804 5.26389 5.32417 5.39662 5.55774 5.82917 6.10946 6.29366 6.51321 6.57761 6.64766 6.78374 7.24744 7.42032 8.88428 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002770 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.140233 B =10107.618864 C =11858.014573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.120 0.880 4 C -0.129 4.129 5 C -0.080 4.080 6 H 0.127 0.873 7 C 0.468 3.532 8 O -0.526 6.526 9 O -0.344 6.344 10 C 0.052 3.948 11 C 0.507 3.493 12 O -0.566 6.566 13 N -0.590 5.590 14 C 0.261 3.739 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.279 1.279 23 C 0.108 3.892 24 C -0.040 4.040 25 C 0.245 3.755 26 N -0.487 5.487 27 C -0.146 4.146 28 C 0.059 3.941 29 O -0.393 6.393 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 19.960 9.633 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.137 0.863 4 C -0.167 4.167 5 C -0.099 4.099 6 H 0.144 0.856 7 C 0.312 3.688 8 O -0.415 6.415 9 O -0.260 6.260 10 C -0.025 4.025 11 C 0.294 3.706 12 O -0.445 6.445 13 N -0.321 5.321 14 C 0.140 3.860 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.017 4.017 24 C -0.081 4.081 25 C -0.073 4.073 26 N -0.165 5.165 27 C -0.184 4.184 28 C -0.017 4.017 29 O -0.312 6.312 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.815 20.360 8.756 22.489 hybrid contribution -1.126 -1.066 -0.729 1.713 sum 2.689 19.294 8.027 21.070 Atomic orbital electron populations 1.22497 0.95135 1.03189 1.03809 1.22310 0.94437 0.96791 0.83443 0.86278 1.22117 1.02284 0.92158 1.00100 1.21281 1.03379 0.94904 0.90341 0.85574 1.24284 0.77557 0.79879 0.87119 1.90653 1.36725 1.68403 1.45698 1.86577 1.68779 1.25233 1.45373 1.22946 1.01197 0.89820 0.88517 1.20437 0.80557 0.87746 0.81874 1.90710 1.38152 1.76617 1.39011 1.47996 1.48599 1.11656 1.23894 1.18899 0.94649 0.76107 0.96326 1.21719 1.08904 0.93310 1.34351 0.92710 1.25692 1.00663 0.95532 0.96708 1.70003 1.41160 0.99278 1.45944 0.85629 0.79734 0.77029 0.79397 1.18859 1.20794 1.20457 1.21627 0.87201 1.01468 0.91367 1.19848 0.90437 1.04618 0.93158 1.29095 0.92911 0.91840 0.93430 1.81233 1.11715 1.11485 1.12102 1.22201 1.02223 1.00935 0.93013 1.22696 0.99917 0.81261 0.97839 1.87991 1.74161 1.25354 1.43685 0.91124 0.90200 0.91815 0.89403 0.91124 0.86661 0.85555 0.94010 0.97336 0.92499 0.88826 0.87899 0.84915 0.85461 0.90997 0.89253 0.87069 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.65 71.98 0.62 -1.29 16 2 C 0.09 1.12 3.91 30.63 0.12 1.24 16 3 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.13 -1.98 4.24 30.68 0.13 -1.85 16 5 C -0.08 -1.40 2.40 -11.42 -0.03 -1.43 16 6 H 0.13 1.88 6.62 -2.39 -0.02 1.87 16 7 C 0.47 11.15 7.26 71.24 0.52 11.67 16 8 O -0.53 -14.11 15.72 21.95 0.35 -13.76 16 9 O -0.34 -9.66 9.69 -44.99 -0.44 -10.09 16 10 C 0.05 1.34 4.50 71.24 0.32 1.66 16 11 C 0.51 18.17 7.75 87.66 0.68 18.85 16 12 O -0.57 -26.61 16.08 15.78 0.25 -26.36 16 13 N -0.59 -20.41 2.46 -826.14 -2.03 -22.44 16 14 C 0.26 12.12 5.16 85.63 0.44 12.56 16 15 C -0.54 -28.57 9.39 25.60 0.24 -28.33 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 17 C 0.01 0.73 5.46 84.65 0.46 1.20 16 18 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 19 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.11 2.53 5.17 86.38 0.45 2.98 16 24 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 25 C 0.24 5.36 15.43 89.45 1.38 6.74 16 26 N -0.49 -13.72 18.53 20.00 0.37 -13.35 16 27 C -0.15 -2.38 5.36 30.68 0.16 -2.22 16 28 C 0.06 0.80 6.51 72.01 0.47 1.27 16 29 O -0.39 -6.45 10.60 -148.98 -1.58 -8.02 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.66 4.98 -2.39 -0.01 0.65 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.27 8.03 -2.39 -0.02 1.25 16 35 H 0.12 2.58 7.39 -2.39 -0.02 2.57 16 36 H 0.13 2.45 7.18 -2.39 -0.02 2.44 16 37 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 38 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 39 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 42 H 0.13 1.71 7.22 -2.38 -0.02 1.69 16 43 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.07 0.80 6.34 -2.39 -0.02 0.78 16 Total: -1.00 -75.02 393.46 6.36 -68.66 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.99 Total: 10.25 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.14 Total: 22.52 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.37 Total: -87.91 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -1.42 Total: -58.24 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.02 6.36 -68.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.402 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds