Wall clock time and date at job start Tue Mar 31 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47957 * 2 1 4 4 C 1.53085 * 109.48309 * 120.02496 * 2 1 3 5 5 C 1.53176 * 109.16570 * 62.37328 * 4 2 1 6 6 H 1.09003 * 109.54183 * 297.02527 * 5 4 2 7 7 C 1.50703 * 109.54257 * 176.84958 * 5 4 2 8 8 O 1.20820 * 120.00092 * 0.17798 * 7 5 4 9 9 O 1.34231 * 119.99572 * 180.18066 * 7 5 4 10 10 C 1.45194 * 117.00040 * 180.02562 * 9 7 5 11 11 C 1.50694 * 109.47579 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99969 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99832 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47420 * 270.00196 * 14 13 11 16 16 H 1.08004 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00109 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46927 * 120.00039 * 19 17 15 22 22 H 1.48502 * 109.46793 * 239.99548 * 19 17 15 23 23 C 1.46499 * 119.99786 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.46840 * 269.99584 * 23 13 11 25 25 C 1.47201 * 109.46973 * 180.02562 * 24 23 13 26 26 N 8.97266 * 152.62425 * 199.26371 * 4 1 2 27 27 C 1.53181 * 109.10697 * 56.93800 * 5 4 2 28 28 C 1.53100 * 109.15602 * 303.15067 * 27 5 4 29 29 O 1.42901 * 109.48096 * 239.96930 * 2 1 3 30 30 H 1.09000 * 109.47400 * 299.97797 * 1 2 3 31 31 H 1.09000 * 109.47508 * 59.97828 * 1 2 3 32 32 H 1.09006 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.52282 * 302.46932 * 4 2 1 34 34 H 1.08996 * 109.57802 * 182.31267 * 4 2 1 35 35 H 1.09005 * 109.47276 * 59.99351 * 10 9 7 36 36 H 1.09000 * 109.46972 * 299.99682 * 10 9 7 37 37 H 1.08999 * 109.47380 * 30.00717 * 14 13 11 38 38 H 1.09001 * 109.46721 * 150.00109 * 14 13 11 39 39 H 0.97006 * 119.99665 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46813 * 149.99858 * 23 13 11 41 41 H 1.08992 * 109.47397 * 29.99919 * 23 13 11 42 42 H 1.09002 * 109.47398 * 300.00326 * 24 23 13 43 43 H 1.09001 * 109.47194 * 60.00507 * 24 23 13 44 44 H 1.08994 * 109.52107 * 62.97207 * 27 5 4 45 45 H 1.09001 * 109.51845 * 183.16428 * 27 5 4 46 46 H 1.09001 * 109.41054 * 297.49986 * 28 27 5 47 47 H 1.09002 * 109.48705 * 177.50396 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7221 1.2495 5 6 1.5758 -2.1812 1.2123 6 1 0.4868 -2.2179 1.2426 7 6 2.1383 -2.9199 2.3993 8 8 2.8366 -2.3397 3.1964 9 8 1.8634 -4.2225 2.5710 10 6 2.4384 -4.8695 3.7366 11 6 2.0236 -6.3180 3.7630 12 8 1.3136 -6.7616 2.8854 13 7 2.4425 -7.1209 4.7613 14 6 2.0387 -8.5290 4.7871 15 6 0.7497 -8.6680 5.5553 16 1 0.2781 -7.7948 5.9812 17 6 0.1724 -9.9100 5.7142 18 7 0.7465 -10.9732 5.1951 19 14 -1.4258 -10.0821 6.6658 20 1 -1.8637 -8.7461 7.1438 21 1 -2.4695 -10.6581 5.7803 22 1 -1.2144 -10.9792 7.8302 23 6 3.3005 -6.5853 5.8210 24 6 4.7680 -6.7471 5.4195 25 6 5.6302 -6.2094 6.4846 26 7 6.2968 -5.7940 7.3051 27 6 2.0747 -2.8336 -0.0807 28 6 1.5645 -2.0286 -1.2789 29 8 2.0065 -0.6742 -1.1663 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6421 -0.2356 2.1399 34 1 3.1297 -0.6873 1.2721 35 1 2.0829 -4.3736 4.6399 36 1 3.5254 -4.8033 3.6897 37 1 1.8939 -8.8843 3.7669 38 1 2.8157 -9.1209 5.2710 39 1 0.3401 -11.8470 5.3066 40 1 3.1154 -7.1285 6.7477 41 1 3.0786 -5.5285 5.9688 42 1 4.9899 -7.8040 5.2717 43 1 4.9532 -6.2039 4.4928 44 1 3.1646 -2.8427 -0.0870 45 1 1.7006 -3.8556 -0.1409 46 1 0.4749 -2.0551 -1.2956 47 1 1.9530 -2.4623 -2.2004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776405953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:41 Heat of formation + Delta-G solvation = -146.191626 kcal Electronic energy + Delta-G solvation = -29478.353179 eV Core-core repulsion = 25240.529960 eV Total energy + Delta-G solvation = -4237.823219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08643 -39.80756 -39.07633 -36.96658 -36.47728 -35.31172 -34.18507 -32.98034 -32.58833 -30.94887 -29.50173 -28.60586 -26.92503 -25.37293 -24.12657 -23.65009 -22.85697 -21.30566 -19.61018 -18.92515 -18.12137 -17.74226 -17.15611 -16.74122 -16.54057 -16.38250 -16.29826 -15.86460 -15.42170 -14.92550 -14.80169 -14.71234 -14.34484 -14.14475 -14.03006 -13.71539 -13.37160 -13.12226 -12.96384 -12.67463 -12.64869 -12.50827 -12.27642 -12.15832 -12.14274 -11.81605 -11.79591 -11.54672 -11.36623 -11.14942 -11.09030 -10.99529 -10.73983 -10.72857 -10.66233 -10.45425 -10.25748 -9.85366 -9.77361 -9.18453 -8.53801 -8.00102 -6.15422 -4.20353 2.02622 2.30809 2.68758 2.78360 3.07195 3.24456 3.32878 3.36001 3.49596 3.57429 4.05958 4.17720 4.33754 4.35823 4.45526 4.51313 4.68312 4.75692 4.81382 4.91562 4.94112 4.97587 5.01959 5.07123 5.10821 5.15525 5.20605 5.24940 5.34238 5.39827 5.45628 5.54449 5.68949 5.71879 5.72996 5.76928 5.91823 5.97662 6.25367 6.79524 6.87140 7.22576 7.30689 7.54047 7.58757 7.80404 8.05646 8.09247 8.67502 8.85803 9.45528 10.92805 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.002770 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.904728 B =10106.481717 C =11856.348305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.088 3.912 3 H 0.108 0.892 4 C -0.134 4.134 5 C -0.081 4.081 6 H 0.113 0.887 7 C 0.466 3.534 8 O -0.509 6.509 9 O -0.326 6.326 10 C 0.045 3.955 11 C 0.509 3.491 12 O -0.509 6.509 13 N -0.592 5.592 14 C 0.246 3.754 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.112 3.888 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 C -0.149 4.149 28 C 0.059 3.941 29 O -0.377 6.377 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 18.247 -9.819 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.030 3.970 3 H 0.126 0.874 4 C -0.172 4.172 5 C -0.100 4.100 6 H 0.131 0.869 7 C 0.308 3.692 8 O -0.397 6.397 9 O -0.241 6.241 10 C -0.033 4.033 11 C 0.294 3.706 12 O -0.384 6.384 13 N -0.325 5.325 14 C 0.128 3.872 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.014 4.014 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.119 5.119 27 C -0.187 4.187 28 C -0.018 4.018 29 O -0.295 6.295 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.919 18.625 -8.972 21.041 hybrid contribution -1.188 -0.562 0.806 1.542 sum 2.731 18.064 -8.165 20.011 Atomic orbital electron populations 1.22512 0.96172 1.03076 1.03100 1.22198 0.93618 0.96589 0.84562 0.87448 1.22138 1.03086 0.92763 0.99198 1.21135 1.02699 0.94732 0.91455 0.86905 1.23711 0.78072 0.80716 0.86670 1.90663 1.35873 1.68354 1.44776 1.86567 1.68326 1.24039 1.45171 1.22996 0.99457 0.93043 0.87762 1.19734 0.81752 0.86130 0.82999 1.90741 1.35568 1.75252 1.36801 1.48164 1.48240 1.13331 1.22755 1.19428 0.95525 0.72991 0.99284 1.21438 1.07729 0.93494 1.34356 0.92236 1.24914 0.97640 0.95645 0.95725 1.69924 1.39598 0.98887 1.44686 0.86445 0.83339 0.78139 0.79523 1.19778 1.20822 1.20943 1.21399 0.86538 1.00267 0.93181 1.19886 0.92803 1.03728 0.92813 1.29024 0.93795 0.93175 0.94244 1.81206 1.10197 1.09755 1.10728 1.22229 1.02656 1.01022 0.92804 1.22616 0.99217 0.81906 0.98039 1.88009 1.73680 1.24796 1.43061 0.91178 0.91525 0.91655 0.89834 0.89842 0.88524 0.88724 0.93325 0.94295 0.92630 0.88167 0.90666 0.86195 0.87686 0.90347 0.88674 0.92279 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 8.65 37.16 0.32 -0.85 16 2 C 0.09 0.64 3.91 -26.69 -0.10 0.54 16 3 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 4 C -0.13 -1.13 4.24 -26.60 -0.11 -1.24 16 5 C -0.08 -0.77 2.40 -91.59 -0.22 -0.99 16 6 H 0.11 0.94 6.62 -51.93 -0.34 0.59 16 7 C 0.47 5.89 7.26 36.01 0.26 6.16 16 8 O -0.51 -7.30 15.72 -18.74 -0.29 -7.60 16 9 O -0.33 -4.77 9.69 -45.91 -0.44 -5.22 16 10 C 0.04 0.63 4.50 36.00 0.16 0.79 16 11 C 0.51 9.27 7.75 -10.99 -0.09 9.18 16 12 O -0.51 -11.68 16.08 -14.11 -0.23 -11.91 16 13 N -0.59 -10.45 2.46 -175.06 -0.43 -10.88 16 14 C 0.25 5.62 5.16 -5.19 -0.03 5.59 16 15 C -0.53 -13.82 9.39 -34.44 -0.32 -14.15 16 16 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.61 15.43 -20.77 -0.32 2.29 16 26 N -0.44 -6.55 18.54 42.15 0.78 -5.76 16 27 C -0.15 -1.29 5.36 -26.59 -0.14 -1.43 16 28 C 0.06 0.44 6.51 37.21 0.24 0.68 16 29 O -0.38 -3.39 10.60 -35.23 -0.37 -3.76 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 4.98 -51.93 -0.26 0.15 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.10 1.23 7.39 -51.93 -0.38 0.84 16 36 H 0.09 1.08 7.18 -51.93 -0.37 0.71 16 37 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 38 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 42 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.11 0.87 7.22 -51.93 -0.37 0.50 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -33.96 393.46 -6.95 -40.92 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.96 Total: -2.25 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.64 Total: 8.89 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 1.09 Total: -40.82 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.34 Total: -28.48 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.96 -6.95 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.275 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds