Wall clock time and date at job start Tue Mar 31 2020 21:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47957 * 2 1 4 4 C 1.53085 * 109.48309 * 120.02496 * 2 1 3 5 5 C 1.53176 * 109.16570 * 62.37328 * 4 2 1 6 6 H 1.09003 * 109.54183 * 297.02527 * 5 4 2 7 7 C 1.50703 * 109.54257 * 176.84958 * 5 4 2 8 8 O 1.20820 * 120.00092 * 0.17798 * 7 5 4 9 9 O 1.34231 * 119.99572 * 180.18066 * 7 5 4 10 10 C 1.45194 * 117.00040 * 180.02562 * 9 7 5 11 11 C 1.50694 * 109.47579 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99969 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99832 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47420 * 270.00196 * 14 13 11 16 16 H 1.08004 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00109 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46927 * 120.00039 * 19 17 15 22 22 H 1.48502 * 109.46793 * 239.99548 * 19 17 15 23 23 C 1.46499 * 119.99786 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.46840 * 269.99584 * 23 13 11 25 25 C 1.47201 * 109.46973 * 180.02562 * 24 23 13 26 26 N 8.97266 * 152.62425 * 199.26371 * 4 1 2 27 27 C 1.53181 * 109.10697 * 56.93800 * 5 4 2 28 28 C 1.53100 * 109.15602 * 303.15067 * 27 5 4 29 29 O 1.42901 * 109.48096 * 239.96930 * 2 1 3 30 30 H 1.09000 * 109.47400 * 299.97797 * 1 2 3 31 31 H 1.09000 * 109.47508 * 59.97828 * 1 2 3 32 32 H 1.09006 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.52282 * 302.46932 * 4 2 1 34 34 H 1.08996 * 109.57802 * 182.31267 * 4 2 1 35 35 H 1.09005 * 109.47276 * 59.99351 * 10 9 7 36 36 H 1.09000 * 109.46972 * 299.99682 * 10 9 7 37 37 H 1.08999 * 109.47380 * 30.00717 * 14 13 11 38 38 H 1.09001 * 109.46721 * 150.00109 * 14 13 11 39 39 H 0.97006 * 119.99665 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46813 * 149.99858 * 23 13 11 41 41 H 1.08992 * 109.47397 * 29.99919 * 23 13 11 42 42 H 1.09002 * 109.47398 * 300.00326 * 24 23 13 43 43 H 1.09001 * 109.47194 * 60.00507 * 24 23 13 44 44 H 1.08994 * 109.52107 * 62.97207 * 27 5 4 45 45 H 1.09001 * 109.51845 * 183.16428 * 27 5 4 46 46 H 1.09001 * 109.41054 * 297.49986 * 28 27 5 47 47 H 1.09002 * 109.48705 * 177.50396 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7221 1.2495 5 6 1.5758 -2.1812 1.2123 6 1 0.4868 -2.2179 1.2426 7 6 2.1383 -2.9199 2.3993 8 8 2.8366 -2.3397 3.1964 9 8 1.8634 -4.2225 2.5710 10 6 2.4384 -4.8695 3.7366 11 6 2.0236 -6.3180 3.7630 12 8 1.3136 -6.7616 2.8854 13 7 2.4425 -7.1209 4.7613 14 6 2.0387 -8.5290 4.7871 15 6 0.7497 -8.6680 5.5553 16 1 0.2781 -7.7948 5.9812 17 6 0.1724 -9.9100 5.7142 18 7 0.7465 -10.9732 5.1951 19 14 -1.4258 -10.0821 6.6658 20 1 -1.8637 -8.7461 7.1438 21 1 -2.4695 -10.6581 5.7803 22 1 -1.2144 -10.9792 7.8302 23 6 3.3005 -6.5853 5.8210 24 6 4.7680 -6.7471 5.4195 25 6 5.6302 -6.2094 6.4846 26 7 6.2968 -5.7940 7.3051 27 6 2.0747 -2.8336 -0.0807 28 6 1.5645 -2.0286 -1.2789 29 8 2.0065 -0.6742 -1.1663 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6421 -0.2356 2.1399 34 1 3.1297 -0.6873 1.2721 35 1 2.0829 -4.3736 4.6399 36 1 3.5254 -4.8033 3.6897 37 1 1.8939 -8.8843 3.7669 38 1 2.8157 -9.1209 5.2710 39 1 0.3401 -11.8470 5.3066 40 1 3.1154 -7.1285 6.7477 41 1 3.0786 -5.5285 5.9688 42 1 4.9899 -7.8040 5.2717 43 1 4.9532 -6.2039 4.4928 44 1 3.1646 -2.8427 -0.0870 45 1 1.7006 -3.8556 -0.1409 46 1 0.4749 -2.0551 -1.2956 47 1 1.9530 -2.4623 -2.2004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776405953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:40 Heat of formation + Delta-G solvation = -166.210460 kcal Electronic energy + Delta-G solvation = -29479.221261 eV Core-core repulsion = 25240.529960 eV Total energy + Delta-G solvation = -4238.691301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04420 -40.86820 -40.16277 -38.08609 -37.57663 -36.71825 -34.94763 -34.85730 -33.17522 -32.24194 -30.82674 -29.27230 -28.48354 -26.23401 -25.38359 -24.51044 -24.27132 -22.24126 -20.39455 -20.18353 -19.12982 -18.87052 -18.40854 -18.09210 -17.76276 -17.57904 -17.14747 -16.88428 -16.56007 -16.26214 -15.84322 -15.64147 -15.50478 -15.21164 -14.90706 -14.64459 -14.42446 -14.38127 -13.94842 -13.84656 -13.67662 -13.60303 -13.55800 -13.19245 -13.17460 -12.97221 -12.73872 -12.73398 -12.54579 -12.47438 -12.20375 -12.17260 -12.05966 -11.84602 -11.75804 -11.65278 -11.57322 -11.10053 -10.70945 -10.59108 -10.48359 -9.58558 -8.18836 -6.30563 1.04542 1.24328 1.40253 1.43072 1.52947 1.57624 1.78220 1.81522 2.30045 2.44829 2.94435 3.02961 3.14079 3.42670 3.54850 3.63266 3.65148 3.88384 3.90923 3.97833 4.07516 4.10304 4.13132 4.17137 4.37171 4.43684 4.48853 4.51077 4.66506 4.73226 4.78375 4.89079 4.98750 5.00196 5.03989 5.06813 5.10316 5.17841 5.26444 5.32567 5.39692 5.56033 5.82940 6.10826 6.29389 6.51320 6.57777 6.64765 6.78700 7.24724 7.41978 8.88368 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.002770 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.904728 B =10106.481717 C =11856.348305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.120 0.880 4 C -0.129 4.129 5 C -0.080 4.080 6 H 0.127 0.873 7 C 0.467 3.533 8 O -0.526 6.526 9 O -0.344 6.344 10 C 0.052 3.948 11 C 0.507 3.493 12 O -0.566 6.566 13 N -0.590 5.590 14 C 0.260 3.740 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.108 3.892 24 C -0.039 4.039 25 C 0.245 3.755 26 N -0.487 5.487 27 C -0.146 4.146 28 C 0.059 3.941 29 O -0.393 6.393 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.009 0.991 38 H 0.042 0.958 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 19.988 -9.649 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.137 0.863 4 C -0.167 4.167 5 C -0.099 4.099 6 H 0.144 0.856 7 C 0.312 3.688 8 O -0.415 6.415 9 O -0.260 6.260 10 C -0.025 4.025 11 C 0.294 3.706 12 O -0.445 6.445 13 N -0.321 5.321 14 C 0.140 3.860 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.017 4.017 24 C -0.080 4.080 25 C -0.073 4.073 26 N -0.165 5.165 27 C -0.184 4.184 28 C -0.017 4.017 29 O -0.312 6.312 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.027 0.973 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.770 20.400 -8.770 22.523 hybrid contribution -1.118 -1.089 0.733 1.724 sum 2.653 19.311 -8.037 21.084 Atomic orbital electron populations 1.22496 0.95128 1.03192 1.03810 1.22307 0.94441 0.96791 0.83440 0.86279 1.22117 1.02279 0.92159 1.00104 1.21287 1.03371 0.94897 0.90350 0.85561 1.24287 0.77563 0.79892 0.87103 1.90650 1.36779 1.68427 1.45621 1.86577 1.68802 1.25158 1.45420 1.22942 1.01189 0.89805 0.88544 1.20439 0.80540 0.87757 0.81881 1.90713 1.38177 1.76647 1.38947 1.47996 1.48631 1.11589 1.23928 1.18909 0.94697 0.76088 0.96353 1.21769 1.08862 0.93281 1.34131 0.92735 1.25695 1.00663 0.95566 0.96728 1.70021 1.41066 0.99308 1.46001 0.85516 0.79553 0.78252 0.78383 1.19264 1.21056 1.19973 1.21626 0.87220 1.01466 0.91358 1.19847 0.90447 1.04633 0.93118 1.29113 0.92906 0.91829 0.93435 1.81249 1.11709 1.11468 1.12116 1.22203 1.02232 1.00921 0.93018 1.22696 0.99922 0.81262 0.97838 1.87993 1.74172 1.25338 1.43683 0.90200 0.91123 0.91809 0.89397 0.91134 0.86680 0.85559 0.97307 0.93993 0.92521 0.88812 0.87916 0.85460 0.84911 0.91016 0.89230 0.91157 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.65 71.98 0.62 -1.29 16 2 C 0.09 1.12 3.91 30.62 0.12 1.24 16 3 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.13 -1.98 4.24 30.68 0.13 -1.85 16 5 C -0.08 -1.40 2.40 -11.42 -0.03 -1.43 16 6 H 0.13 1.88 6.62 -2.39 -0.02 1.86 16 7 C 0.47 11.15 7.26 71.24 0.52 11.66 16 8 O -0.53 -14.11 15.72 21.98 0.35 -13.77 16 9 O -0.34 -9.65 9.69 -45.07 -0.44 -10.09 16 10 C 0.05 1.34 4.50 71.23 0.32 1.66 16 11 C 0.51 18.16 7.75 87.65 0.68 18.84 16 12 O -0.57 -26.57 16.08 15.74 0.25 -26.31 16 13 N -0.59 -20.40 2.46 -826.16 -2.03 -22.43 16 14 C 0.26 12.08 5.16 85.63 0.44 12.52 16 15 C -0.54 -28.43 9.39 25.60 0.24 -28.19 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.92 -52.33 13.29 21.45 0.28 -52.05 16 19 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.11 2.53 5.17 86.38 0.45 2.98 16 24 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 25 C 0.24 5.36 15.43 89.44 1.38 6.74 16 26 N -0.49 -13.72 18.54 20.00 0.37 -13.35 16 27 C -0.15 -2.38 5.36 30.69 0.16 -2.21 16 28 C 0.06 0.80 6.51 72.02 0.47 1.27 16 29 O -0.39 -6.44 10.60 -148.98 -1.58 -8.02 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.66 4.98 -2.38 -0.01 0.65 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.27 8.02 -2.39 -0.02 1.25 16 35 H 0.12 2.58 7.39 -2.38 -0.02 2.57 16 36 H 0.13 2.45 7.18 -2.39 -0.02 2.44 16 37 H 0.01 0.48 7.42 -2.39 -0.02 0.46 16 38 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 39 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 40 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 42 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.13 1.71 7.22 -2.39 -0.02 1.69 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 0.80 6.34 -2.39 -0.02 0.78 16 47 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.02 393.46 6.36 -68.66 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.99 Total: 10.02 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.14 Total: 22.57 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.37 Total: -87.83 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -1.42 Total: -58.18 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.02 6.36 -68.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.552 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds