Wall clock time and date at job start Tue Mar 31 2020 21:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47894 * 2 1 4 4 C 1.53096 * 109.47781 * 120.02182 * 2 1 3 5 5 C 1.53181 * 109.16280 * 177.60025 * 4 2 1 6 6 H 1.09005 * 109.54183 * 62.88808 * 5 4 2 7 7 C 1.50700 * 109.54292 * 183.15441 * 5 4 2 8 8 O 1.20821 * 120.00128 * 359.97438 * 7 5 4 9 9 O 1.34230 * 119.99762 * 180.02562 * 7 5 4 10 10 C 1.45197 * 116.99839 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00210 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00268 * 180.02562 * 13 11 10 15 15 C 1.50689 * 109.47276 * 89.99476 * 14 13 11 16 16 H 1.08001 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00382 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47478 * 90.00065 * 19 17 15 21 21 H 1.48503 * 109.46993 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47055 * 329.99721 * 19 17 15 23 23 C 1.46499 * 120.00044 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.47354 * 89.99979 * 23 13 11 25 25 C 1.47200 * 109.47359 * 180.02562 * 24 23 13 26 26 N 8.97337 * 145.81504 * 202.28377 * 4 1 2 27 27 C 1.53176 * 109.03564 * 303.02405 * 5 4 2 28 28 C 1.53090 * 109.16668 * 56.97896 * 27 5 4 29 29 O 1.42902 * 109.41282 * 302.38812 * 28 27 5 30 30 H 1.09005 * 109.46948 * 299.97874 * 1 2 3 31 31 H 1.09002 * 109.46774 * 59.97765 * 1 2 3 32 32 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.52300 * 297.50977 * 4 2 1 34 34 H 1.09004 * 109.51858 * 57.69704 * 4 2 1 35 35 H 1.08999 * 109.47011 * 300.00163 * 10 9 7 36 36 H 1.08994 * 109.47220 * 60.00230 * 10 9 7 37 37 H 1.09000 * 109.46984 * 210.00099 * 14 13 11 38 38 H 1.08997 * 109.46772 * 329.99458 * 14 13 11 39 39 H 0.96996 * 120.00175 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47483 * 210.00377 * 23 13 11 41 41 H 1.09002 * 109.47028 * 330.00016 * 23 13 11 42 42 H 1.08997 * 109.47151 * 300.00601 * 24 23 13 43 43 H 1.09002 * 109.47022 * 60.00034 * 24 23 13 44 44 H 1.09005 * 109.52173 * 297.06763 * 27 5 4 45 45 H 1.08998 * 109.57285 * 176.91739 * 27 5 4 46 46 H 1.09003 * 109.47962 * 182.41257 * 28 27 5 47 47 H 1.09000 * 109.48234 * 62.37294 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7706 1.2125 6 1 3.9688 0.2439 1.2411 7 6 4.0799 -1.5472 2.3995 8 8 3.2999 -2.0145 3.1951 9 8 5.3998 -1.7190 2.5734 10 6 5.8179 -2.4771 3.7390 11 6 7.3221 -2.5650 3.7680 12 8 7.9772 -2.0407 2.8923 13 7 7.9393 -3.2270 4.7665 14 6 9.4016 -3.3119 4.7950 15 6 9.9578 -2.1424 5.5655 16 1 9.2890 -1.4094 5.9918 17 6 11.3206 -2.0082 5.7264 18 7 12.1351 -2.9012 5.2077 19 14 12.0100 -0.5588 6.6821 20 1 12.1270 -0.9226 8.1171 21 1 13.3511 -0.2077 6.1496 22 1 11.1002 0.6061 6.5393 23 6 7.1481 -3.8608 5.8241 24 6 6.8159 -5.2987 5.4203 25 6 6.0203 -5.9353 6.4826 26 7 5.4066 -6.4279 7.3024 27 6 4.0178 -1.4597 -0.0805 28 6 3.4310 -0.7091 -1.2788 29 8 2.0068 -0.6743 -1.1663 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7146 -0.1842 2.1399 34 1 1.6443 -1.7374 1.2710 35 1 5.4659 -1.9786 4.6421 36 1 5.3959 -3.4809 3.6901 37 1 9.7022 -4.2416 5.2784 38 1 9.7867 -3.2915 3.7755 39 1 13.0938 -2.8066 5.3206 40 1 7.7202 -3.8669 6.7518 41 1 6.2239 -3.3019 5.9708 42 1 6.2438 -5.2926 4.4926 43 1 7.7401 -5.8576 5.2735 44 1 3.6617 -2.4900 -0.0860 45 1 5.1060 -1.4503 -0.1422 46 1 3.7104 -1.2202 -2.2002 47 1 3.8194 0.3092 -1.2955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776405954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:43 Heat of formation + Delta-G solvation = -149.594656 kcal Electronic energy + Delta-G solvation = -29297.425761 eV Core-core repulsion = 25059.454975 eV Total energy + Delta-G solvation = -4237.970786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00993 -39.65755 -39.02571 -36.96042 -36.47701 -35.31043 -34.16346 -33.13327 -32.97124 -30.94878 -29.48639 -28.28564 -26.92722 -25.37745 -24.12760 -23.18924 -22.76080 -21.41671 -20.32635 -18.91518 -17.94041 -17.74140 -16.88241 -16.79344 -16.59238 -16.50617 -16.26240 -15.81894 -15.35394 -15.16271 -14.78117 -14.63091 -14.39631 -14.21097 -13.97824 -13.67259 -13.15497 -12.99423 -12.88599 -12.67583 -12.66423 -12.50843 -12.28577 -12.24856 -12.13805 -11.81437 -11.72653 -11.51930 -11.36112 -11.15317 -11.08929 -11.01534 -10.88175 -10.73400 -10.66660 -10.52506 -10.25469 -9.86668 -9.79201 -9.18438 -8.53267 -8.00288 -6.15128 -4.20161 2.02304 2.30172 2.68403 2.77985 3.07205 3.24946 3.32426 3.35994 3.41830 3.55838 4.05900 4.18465 4.34397 4.35807 4.42343 4.53128 4.75512 4.78385 4.78838 4.87530 4.97449 5.02287 5.05469 5.10150 5.11774 5.18183 5.20718 5.29699 5.32988 5.39677 5.40627 5.54872 5.64130 5.72938 5.74797 5.80207 5.89376 5.97573 6.24813 6.79507 6.89011 7.22637 7.30557 7.53966 7.58440 7.80473 8.05663 8.09363 8.67523 8.85669 9.45612 10.93053 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.002655 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.689918 B =10542.953694 C =12202.134961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.061 0.939 4 C -0.135 4.135 5 C -0.081 4.081 6 H 0.112 0.888 7 C 0.466 3.534 8 O -0.508 6.508 9 O -0.326 6.326 10 C 0.045 3.955 11 C 0.509 3.491 12 O -0.509 6.509 13 N -0.592 5.592 14 C 0.246 3.754 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.112 3.888 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 C -0.150 4.150 28 C 0.064 3.936 29 O -0.380 6.380 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 2.793 -9.828 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.079 0.921 4 C -0.172 4.172 5 C -0.100 4.100 6 H 0.130 0.870 7 C 0.309 3.691 8 O -0.396 6.396 9 O -0.241 6.241 10 C -0.033 4.033 11 C 0.294 3.706 12 O -0.384 6.384 13 N -0.325 5.325 14 C 0.128 3.872 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.014 4.014 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.119 5.119 27 C -0.188 4.188 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.473 2.061 -8.983 21.544 hybrid contribution 0.958 0.903 0.796 1.538 sum -18.515 2.964 -8.187 20.461 Atomic orbital electron populations 1.21757 0.92665 1.03197 1.02561 1.22110 0.95420 0.94998 0.84531 0.92064 1.22189 0.92289 1.03585 0.99186 1.21111 0.96975 1.00428 0.91479 0.87010 1.23675 0.80625 0.78192 0.86611 1.90664 1.57166 1.46981 1.44826 1.86568 1.25025 1.67296 1.45204 1.22999 0.95282 0.97216 0.87761 1.19729 0.87670 0.80224 0.82983 1.90739 1.66287 1.44406 1.36920 1.48164 1.09664 1.51837 1.22837 1.19423 0.71000 0.97501 0.99274 1.21394 0.91854 1.09466 1.34331 0.92301 1.24916 0.96815 0.96466 0.95722 1.69915 1.03582 1.35000 1.44610 0.86496 0.78474 0.82677 0.79793 1.20611 1.21052 1.19858 1.21400 0.96920 0.89846 0.93221 1.19884 0.99289 0.97182 0.92868 1.29046 0.93449 0.93521 0.94232 1.81229 1.10484 1.09497 1.10681 1.22240 1.03120 1.00620 0.92806 1.22586 0.80699 0.99878 0.98077 1.87950 1.21121 1.77949 1.42929 0.90915 0.91668 0.91632 0.89855 0.89812 0.88516 0.88722 0.94298 0.93326 0.92573 0.88164 0.90668 0.87692 0.86183 0.90328 0.88633 0.88065 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.57 37.16 0.36 -0.57 16 2 C 0.09 0.67 3.26 -26.68 -0.09 0.58 16 3 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.13 -1.16 4.02 -26.59 -0.11 -1.27 16 5 C -0.08 -0.77 2.72 -91.59 -0.25 -1.02 16 6 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.47 5.92 7.26 36.01 0.26 6.18 16 8 O -0.51 -7.31 15.72 -18.75 -0.29 -7.61 16 9 O -0.33 -4.78 9.69 -45.90 -0.44 -5.22 16 10 C 0.04 0.63 4.50 36.01 0.16 0.79 16 11 C 0.51 9.28 7.75 -10.99 -0.09 9.20 16 12 O -0.51 -11.70 16.08 -14.10 -0.23 -11.93 16 13 N -0.59 -10.46 2.46 -175.07 -0.43 -10.89 16 14 C 0.25 5.63 5.16 -5.20 -0.03 5.60 16 15 C -0.53 -13.84 9.39 -34.45 -0.32 -14.16 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.61 15.43 -20.75 -0.32 2.28 16 26 N -0.44 -6.55 18.54 42.17 0.78 -5.77 16 27 C -0.15 -1.30 5.36 -26.59 -0.14 -1.44 16 28 C 0.06 0.48 6.84 37.20 0.25 0.74 16 29 O -0.38 -3.50 10.41 -35.23 -0.37 -3.86 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.10 1.23 7.39 -51.93 -0.38 0.84 16 36 H 0.09 1.08 7.18 -51.93 -0.37 0.71 16 37 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 40 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 42 H 0.11 0.87 7.22 -51.93 -0.37 0.50 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -34.01 400.44 -7.14 -41.15 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.30 Total: -2.78 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.60 Total: 9.25 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.09 Total: -40.85 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.33 Total: -28.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.01 -7.14 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.447 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds