Wall clock time and date at job start Tue Mar 31 2020 21:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47894 * 2 1 4 4 C 1.53096 * 109.47781 * 120.02182 * 2 1 3 5 5 C 1.53181 * 109.16280 * 177.60025 * 4 2 1 6 6 H 1.09005 * 109.54183 * 62.88808 * 5 4 2 7 7 C 1.50700 * 109.54292 * 183.15441 * 5 4 2 8 8 O 1.20821 * 120.00128 * 359.97438 * 7 5 4 9 9 O 1.34230 * 119.99762 * 180.02562 * 7 5 4 10 10 C 1.45197 * 116.99839 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00210 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00268 * 180.02562 * 13 11 10 15 15 C 1.50689 * 109.47276 * 89.99476 * 14 13 11 16 16 H 1.08001 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00382 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47478 * 90.00065 * 19 17 15 21 21 H 1.48503 * 109.46993 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47055 * 329.99721 * 19 17 15 23 23 C 1.46499 * 120.00044 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.47354 * 89.99979 * 23 13 11 25 25 C 1.47200 * 109.47359 * 180.02562 * 24 23 13 26 26 N 8.97337 * 145.81504 * 202.28377 * 4 1 2 27 27 C 1.53176 * 109.03564 * 303.02405 * 5 4 2 28 28 C 1.53090 * 109.16668 * 56.97896 * 27 5 4 29 29 O 1.42902 * 109.41282 * 302.38812 * 28 27 5 30 30 H 1.09005 * 109.46948 * 299.97874 * 1 2 3 31 31 H 1.09002 * 109.46774 * 59.97765 * 1 2 3 32 32 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.52300 * 297.50977 * 4 2 1 34 34 H 1.09004 * 109.51858 * 57.69704 * 4 2 1 35 35 H 1.08999 * 109.47011 * 300.00163 * 10 9 7 36 36 H 1.08994 * 109.47220 * 60.00230 * 10 9 7 37 37 H 1.09000 * 109.46984 * 210.00099 * 14 13 11 38 38 H 1.08997 * 109.46772 * 329.99458 * 14 13 11 39 39 H 0.96996 * 120.00175 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47483 * 210.00377 * 23 13 11 41 41 H 1.09002 * 109.47028 * 330.00016 * 23 13 11 42 42 H 1.08997 * 109.47151 * 300.00601 * 24 23 13 43 43 H 1.09002 * 109.47022 * 60.00034 * 24 23 13 44 44 H 1.09005 * 109.52173 * 297.06763 * 27 5 4 45 45 H 1.08998 * 109.57285 * 176.91739 * 27 5 4 46 46 H 1.09003 * 109.47962 * 182.41257 * 28 27 5 47 47 H 1.09000 * 109.48234 * 62.37294 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5711 -0.7706 1.2125 6 1 3.9688 0.2439 1.2411 7 6 4.0799 -1.5472 2.3995 8 8 3.2999 -2.0145 3.1951 9 8 5.3998 -1.7190 2.5734 10 6 5.8179 -2.4771 3.7390 11 6 7.3221 -2.5650 3.7680 12 8 7.9772 -2.0407 2.8923 13 7 7.9393 -3.2270 4.7665 14 6 9.4016 -3.3119 4.7950 15 6 9.9578 -2.1424 5.5655 16 1 9.2890 -1.4094 5.9918 17 6 11.3206 -2.0082 5.7264 18 7 12.1351 -2.9012 5.2077 19 14 12.0100 -0.5588 6.6821 20 1 12.1270 -0.9226 8.1171 21 1 13.3511 -0.2077 6.1496 22 1 11.1002 0.6061 6.5393 23 6 7.1481 -3.8608 5.8241 24 6 6.8159 -5.2987 5.4203 25 6 6.0203 -5.9353 6.4826 26 7 5.4066 -6.4279 7.3024 27 6 4.0178 -1.4597 -0.0805 28 6 3.4310 -0.7091 -1.2788 29 8 2.0068 -0.6743 -1.1663 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7146 -0.1842 2.1399 34 1 1.6443 -1.7374 1.2710 35 1 5.4659 -1.9786 4.6421 36 1 5.3959 -3.4809 3.6901 37 1 9.7022 -4.2416 5.2784 38 1 9.7867 -3.2915 3.7755 39 1 13.0938 -2.8066 5.3206 40 1 7.7202 -3.8669 6.7518 41 1 6.2239 -3.3019 5.9708 42 1 6.2438 -5.2926 4.4926 43 1 7.7401 -5.8576 5.2735 44 1 3.6617 -2.4900 -0.0860 45 1 5.1060 -1.4503 -0.1422 46 1 3.7104 -1.2202 -2.2002 47 1 3.8194 0.3092 -1.2955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776405954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:43 Heat of formation + Delta-G solvation = -169.425557 kcal Electronic energy + Delta-G solvation = -29298.285693 eV Core-core repulsion = 25059.454975 eV Total energy + Delta-G solvation = -4238.830718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00131 -40.80293 -40.00945 -38.08107 -37.57667 -36.71742 -34.94202 -34.84939 -33.70638 -32.24290 -30.82838 -28.98722 -28.46081 -26.24050 -25.38436 -24.53062 -23.73040 -22.22532 -21.11758 -20.30229 -19.00807 -18.84162 -18.39584 -17.94822 -17.77790 -17.49928 -17.18854 -16.96405 -16.50840 -16.23780 -15.89757 -15.72980 -15.56449 -15.05634 -14.93569 -14.82374 -14.40074 -14.26817 -13.85727 -13.71559 -13.60498 -13.57187 -13.51898 -13.18199 -13.15264 -12.97375 -12.83706 -12.75209 -12.52117 -12.45784 -12.20061 -12.14367 -12.06636 -11.81343 -11.76823 -11.69059 -11.67280 -11.26497 -10.71660 -10.58221 -10.50342 -9.58833 -8.18674 -6.30465 1.04270 1.23752 1.40787 1.43161 1.52087 1.57424 1.77899 1.81116 2.29708 2.44819 2.85641 3.02439 3.14047 3.43349 3.54634 3.59201 3.66016 3.87515 3.91018 3.97723 4.07337 4.09981 4.14359 4.21755 4.39330 4.44145 4.50756 4.52658 4.72244 4.74162 4.78295 4.84650 4.99365 5.00077 5.01993 5.05481 5.07615 5.20888 5.27124 5.32459 5.35246 5.55767 5.82850 6.10801 6.30679 6.51095 6.57638 6.64539 6.78479 7.24619 7.41928 8.88315 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.002655 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.689918 B =10542.953694 C =12202.134961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.076 0.924 4 C -0.129 4.129 5 C -0.080 4.080 6 H 0.128 0.872 7 C 0.468 3.532 8 O -0.526 6.526 9 O -0.344 6.344 10 C 0.052 3.948 11 C 0.507 3.493 12 O -0.567 6.567 13 N -0.590 5.590 14 C 0.260 3.740 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.108 3.892 24 C -0.039 4.039 25 C 0.244 3.756 26 N -0.488 5.488 27 C -0.146 4.146 28 C 0.064 3.936 29 O -0.397 6.397 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.360 3.577 -9.633 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.099 4.099 6 H 0.146 0.854 7 C 0.312 3.688 8 O -0.415 6.415 9 O -0.259 6.259 10 C -0.025 4.025 11 C 0.294 3.706 12 O -0.445 6.445 13 N -0.322 5.322 14 C 0.140 3.860 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.017 4.017 24 C -0.080 4.080 25 C -0.073 4.073 26 N -0.165 5.165 27 C -0.184 4.184 28 C -0.012 4.012 29 O -0.317 6.317 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.063 2.824 -8.756 22.985 hybrid contribution 1.424 0.653 0.713 1.722 sum -19.639 3.476 -8.043 21.504 Atomic orbital electron populations 1.21780 0.91840 1.02996 1.03483 1.22237 0.96131 0.95339 0.83523 0.90654 1.22159 0.91478 1.02990 1.00038 1.21271 0.97523 1.00762 0.90377 0.85411 1.24249 0.79654 0.77823 0.87041 1.90651 1.57254 1.47886 1.45686 1.86578 1.26290 1.67624 1.45452 1.22945 0.91671 0.99310 0.88551 1.20436 0.89487 0.78822 0.81863 1.90710 1.67955 1.46764 1.39073 1.47996 1.08123 1.52032 1.24005 1.18906 0.74183 0.96602 0.96344 1.21730 0.92107 1.10131 1.34102 0.92763 1.25700 0.97373 0.98856 0.96739 1.70015 1.03795 1.36635 1.45937 0.85565 0.77526 0.79596 0.79030 1.19326 1.21026 1.19881 1.21626 0.97169 0.91470 0.91405 1.19846 0.99850 0.95172 0.93178 1.29135 0.92321 0.92414 0.93419 1.81272 1.12229 1.10978 1.12071 1.22210 1.02812 1.00377 0.93013 1.22682 0.80040 1.00616 0.97878 1.87938 1.21900 1.78310 1.43506 0.89523 0.91236 0.92400 0.89396 0.91261 0.86663 0.85558 0.93984 0.97317 0.92517 0.88801 0.87914 0.84919 0.85442 0.91099 0.89126 0.86956 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 71.98 0.69 -0.91 16 2 C 0.09 1.15 3.26 30.63 0.10 1.25 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.13 -2.03 4.02 30.69 0.12 -1.90 16 5 C -0.08 -1.41 2.72 -11.42 -0.03 -1.44 16 6 H 0.13 1.83 8.14 -2.38 -0.02 1.82 16 7 C 0.47 11.17 7.26 71.24 0.52 11.69 16 8 O -0.53 -14.15 15.72 21.98 0.35 -13.80 16 9 O -0.34 -9.64 9.69 -45.06 -0.44 -10.08 16 10 C 0.05 1.34 4.50 71.24 0.32 1.66 16 11 C 0.51 18.18 7.75 87.66 0.68 18.86 16 12 O -0.57 -26.62 16.08 15.77 0.25 -26.37 16 13 N -0.59 -20.42 2.46 -826.18 -2.03 -22.45 16 14 C 0.26 12.09 5.16 85.63 0.44 12.53 16 15 C -0.54 -28.45 9.39 25.60 0.24 -28.21 16 16 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 17 C 0.01 0.69 5.46 84.65 0.46 1.15 16 18 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 19 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.11 2.53 5.17 86.38 0.45 2.98 16 24 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 25 C 0.24 5.35 15.43 89.44 1.38 6.73 16 26 N -0.49 -13.72 18.54 20.01 0.37 -13.35 16 27 C -0.15 -2.38 5.36 30.68 0.16 -2.21 16 28 C 0.06 0.86 6.84 72.01 0.49 1.36 16 29 O -0.40 -6.67 10.41 -148.98 -1.55 -8.22 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.29 8.02 -2.38 -0.02 1.27 16 35 H 0.12 2.59 7.39 -2.39 -0.02 2.57 16 36 H 0.13 2.45 7.18 -2.39 -0.02 2.44 16 37 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 38 H 0.01 0.48 7.42 -2.39 -0.02 0.46 16 39 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 42 H 0.13 1.71 7.22 -2.39 -0.02 1.69 16 43 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.24 400.44 6.44 -68.81 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.97 Total: 9.74 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.20 Total: 23.02 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.37 Total: -87.88 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.39 Total: -58.47 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.24 6.44 -68.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776405954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.616 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds