Wall clock time and date at job start Tue Mar 31 2020 22:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.54958 * 2 1 4 4 C 1.54992 * 110.61849 * 237.11680 * 2 1 3 5 5 C 1.54809 * 102.09058 * 204.31978 * 4 2 1 6 6 H 1.09001 * 110.60139 * 139.61597 * 5 4 2 7 7 C 1.53000 * 110.49143 * 262.20442 * 5 4 2 8 8 C 1.54098 * 104.19321 * 20.88307 * 5 4 2 9 9 H 1.08994 * 109.88246 * 121.59971 * 8 5 4 10 10 C 1.50699 * 109.88313 * 242.60837 * 8 5 4 11 11 O 1.20823 * 120.00393 * 114.98946 * 10 8 5 12 12 O 1.34230 * 119.99673 * 294.99942 * 10 8 5 13 13 C 1.45203 * 116.99899 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46890 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00501 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99626 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00048 * 179.97438 * 16 14 13 18 18 C 1.50688 * 109.47315 * 270.00230 * 17 16 14 19 19 H 1.07996 * 120.00358 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00178 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00224 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46824 * 60.00585 * 22 20 18 24 24 H 1.48504 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47186 * 300.00252 * 22 20 18 26 26 C 1.46500 * 120.00273 * 359.97438 * 16 14 13 27 27 C 1.52997 * 109.47473 * 270.00246 * 26 16 14 28 28 C 1.47194 * 109.47306 * 179.97438 * 27 26 16 29 29 N 9.06780 * 135.06130 * 24.72219 * 2 1 3 30 30 O 1.43746 * 107.28952 * 2.02922 * 8 5 4 31 31 H 1.09005 * 109.47031 * 182.87577 * 1 2 3 32 32 H 1.08998 * 109.47190 * 302.88466 * 1 2 3 33 33 H 1.09000 * 109.46862 * 62.87991 * 1 2 3 34 34 H 1.08996 * 110.90836 * 86.12635 * 4 2 1 35 35 H 1.09001 * 110.94337 * 322.53232 * 4 2 1 36 36 H 1.08994 * 109.47714 * 174.76658 * 7 5 4 37 37 H 1.08999 * 109.47106 * 294.77013 * 7 5 4 38 38 H 1.09005 * 109.46758 * 54.76862 * 7 5 4 39 39 H 1.08997 * 109.47037 * 59.99382 * 13 12 10 40 40 H 1.09004 * 109.46876 * 299.99812 * 13 12 10 41 41 H 1.09001 * 109.46688 * 30.00138 * 17 16 14 42 42 H 1.08998 * 109.47230 * 149.99606 * 17 16 14 43 43 H 0.96991 * 120.00458 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47129 * 149.99989 * 26 16 14 45 45 H 1.08998 * 109.46845 * 30.00795 * 26 16 14 46 46 H 1.09002 * 109.47153 * 59.99757 * 27 26 16 47 47 H 1.09001 * 109.46832 * 299.99948 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7267 6 1 3.7032 -2.2335 -1.0359 7 6 4.5468 -0.2502 -1.2557 8 6 3.3875 -1.1219 0.8088 9 1 3.6133 -2.0919 1.2516 10 6 4.3557 -0.0870 1.3213 11 8 3.9426 0.9121 1.8608 12 8 5.6770 -0.2751 1.1783 13 6 6.5505 0.7633 1.6951 14 6 7.9869 0.3810 1.4469 15 8 8.2488 -0.6638 0.8897 16 7 8.9805 1.2004 1.8441 17 6 10.3769 0.8286 1.6033 18 6 10.8970 0.0414 2.7783 19 1 10.2518 -0.1620 3.6201 20 6 12.1962 -0.4200 2.7783 21 7 12.9819 -0.1728 1.7530 22 14 12.8411 -1.3952 4.2352 23 1 12.0244 -2.6232 4.4094 24 1 14.2566 -1.7722 3.9910 25 1 12.7553 -0.5652 5.4635 26 6 8.6642 2.4629 2.5167 27 6 8.5122 3.5722 1.4740 28 6 8.1938 4.8405 2.1497 29 7 7.9488 5.8180 2.6787 30 8 2.0416 -0.7348 1.1328 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3633 0.5580 0.8630 33 1 -0.3633 0.4685 -0.9147 34 1 2.1484 -0.1453 -2.0958 35 1 1.4568 -1.6601 -1.4272 36 1 5.5147 -0.5082 -0.8261 37 1 4.5991 -0.3275 -2.3417 38 1 4.2857 0.7705 -0.9762 39 1 6.3850 0.8773 2.7664 40 1 6.3325 1.7052 1.1917 41 1 10.4404 0.2198 0.7014 42 1 10.9762 1.7301 1.4760 43 1 13.8958 -0.4977 1.7528 44 1 9.4693 2.7194 3.2053 45 1 7.7321 2.3554 3.0714 46 1 7.7071 3.3157 0.7853 47 1 9.4443 3.6796 0.9193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800297058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:54 Heat of formation + Delta-G solvation = -138.337061 kcal Electronic energy + Delta-G solvation = -29956.607567 eV Core-core repulsion = 25719.124947 eV Total energy + Delta-G solvation = -4237.482620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32206 -39.70849 -38.87488 -36.90782 -36.36359 -35.29201 -33.95317 -32.96764 -32.53102 -30.93950 -29.52890 -27.51989 -27.09858 -26.41836 -24.12582 -23.18391 -22.46144 -21.25779 -20.43405 -18.91399 -17.92313 -17.76834 -17.12106 -16.87536 -16.59935 -16.47386 -16.07971 -15.95535 -15.49832 -14.77246 -14.61505 -14.48460 -14.14161 -14.01440 -13.72564 -13.41294 -13.08220 -13.03414 -12.79273 -12.73967 -12.65487 -12.49319 -12.35031 -12.23448 -12.16550 -11.88394 -11.75823 -11.43418 -11.34777 -11.30036 -11.12237 -11.04542 -10.91456 -10.70844 -10.66122 -10.51923 -10.24558 -9.93811 -9.79834 -9.16897 -8.51777 -7.99364 -6.14004 -4.19079 2.04354 2.25155 2.67612 2.77375 3.08052 3.28105 3.32834 3.35857 3.39963 3.57261 4.03867 4.07282 4.26238 4.37123 4.49747 4.56788 4.70818 4.77316 4.88698 4.94393 4.98028 4.99309 5.10320 5.13368 5.16363 5.19270 5.21909 5.28713 5.38648 5.40241 5.44335 5.63186 5.70686 5.73499 5.78508 5.81248 5.98403 6.10409 6.25905 6.40367 6.80521 7.23389 7.31447 7.54389 7.63073 7.81539 8.06790 8.10434 8.68504 8.86604 9.46709 10.94133 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002924 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.949150 B = 9574.910318 C =11010.780819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.110 4.110 6 H 0.103 0.897 7 C -0.168 4.168 8 C 0.092 3.908 9 H 0.136 0.864 10 C 0.446 3.554 11 O -0.499 6.499 12 O -0.325 6.325 13 C 0.043 3.957 14 C 0.510 3.490 15 O -0.509 6.509 16 N -0.591 5.591 17 C 0.247 3.753 18 C -0.532 4.532 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.112 3.888 27 C -0.050 4.050 28 C 0.215 3.785 29 N -0.442 5.442 30 O -0.339 6.339 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.276 0.825 -7.233 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.093 0.907 4 C -0.185 4.185 5 C -0.129 4.129 6 H 0.122 0.878 7 C -0.225 4.225 8 C 0.032 3.968 9 H 0.154 0.846 10 C 0.288 3.712 11 O -0.386 6.386 12 O -0.240 6.240 13 C -0.035 4.035 14 C 0.294 3.706 15 O -0.383 6.383 16 N -0.325 5.325 17 C 0.129 3.871 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.014 4.014 27 C -0.092 4.092 28 C -0.103 4.103 29 N -0.119 5.119 30 O -0.257 6.257 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.497 1.950 -6.460 21.579 hybrid contribution 0.724 -0.559 0.657 1.127 sum -19.772 1.390 -5.803 20.653 Atomic orbital electron populations 1.21749 0.92580 1.03102 1.02690 1.23295 0.95575 0.95834 0.84510 0.90724 1.23336 0.95364 1.01115 0.98731 1.22439 0.96353 1.02643 0.91477 0.87839 1.22270 0.99989 0.98045 1.02210 1.22442 0.81960 0.95840 0.96596 0.84650 1.24366 0.82730 0.87749 0.76371 1.90670 1.79068 1.29133 1.39686 1.86627 1.16904 1.47532 1.72968 1.22992 0.88986 0.90444 1.01048 1.19720 0.85402 0.84991 0.80441 1.90738 1.83681 1.22891 1.40992 1.48162 1.08767 1.18063 1.57500 1.19413 0.72944 0.96573 0.98210 1.21362 0.96948 1.35048 1.03756 0.92335 1.24907 0.96684 0.95943 0.96320 1.69901 1.07551 1.45870 1.29835 0.86562 0.77835 0.80594 0.82485 1.20104 1.21165 1.20221 1.21401 1.03185 0.83098 0.93740 1.19880 1.05301 0.85403 0.98577 1.29127 0.92954 0.94549 0.93686 1.81306 1.09495 1.11980 1.09108 1.89017 1.23437 1.73036 1.40189 0.91578 0.91657 0.90884 0.89541 0.89797 0.88902 0.91354 0.93010 0.88527 0.88829 0.93325 0.94329 0.92524 0.88171 0.90646 0.87722 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.66 37.16 0.36 -0.63 16 2 C 0.06 0.59 3.87 -25.68 -0.10 0.49 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.15 -1.03 6.14 -24.73 -0.15 -1.19 16 5 C -0.11 -0.93 3.64 -89.09 -0.32 -1.26 16 6 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.17 -1.60 7.86 37.16 0.29 -1.31 16 8 C 0.09 0.98 4.00 -27.31 -0.11 0.87 16 9 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 10 C 0.45 5.98 5.58 36.01 0.20 6.18 16 11 O -0.50 -7.77 16.23 -25.38 -0.41 -8.19 16 12 O -0.32 -4.69 7.35 -45.90 -0.34 -5.03 16 13 C 0.04 0.60 4.50 36.01 0.16 0.76 16 14 C 0.51 9.18 7.75 -10.99 -0.09 9.10 16 15 O -0.51 -11.49 16.08 -14.10 -0.23 -11.71 16 16 N -0.59 -10.41 2.46 -175.07 -0.43 -10.84 16 17 C 0.25 5.62 5.16 -5.20 -0.03 5.60 16 18 C -0.53 -13.86 9.39 -34.45 -0.32 -14.18 16 19 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.11 1.44 5.17 -4.04 -0.02 1.42 16 27 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 28 C 0.21 2.61 15.44 -20.69 -0.32 2.29 16 29 N -0.44 -6.58 18.55 42.24 0.78 -5.80 16 30 O -0.34 -3.95 10.46 -54.85 -0.57 -4.52 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 35 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.09 1.10 5.91 -51.93 -0.31 0.79 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.51 7.49 -51.93 -0.39 0.13 16 39 H 0.10 1.26 7.40 -51.93 -0.38 0.87 16 40 H 0.09 1.06 7.18 -51.93 -0.37 0.69 16 41 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 42 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.10 1.36 8.07 -51.93 -0.42 0.95 16 45 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 46 H 0.10 0.86 7.22 -51.93 -0.38 0.49 16 47 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -34.12 397.30 -7.36 -41.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.14 Total: -2.12 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.72 Total: 9.07 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 1.09 Total: -40.84 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.55 Total: -29.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.12 -7.36 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.867 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds