Wall clock time and date at job start Tue Mar 31 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.54958 * 2 1 4 4 C 1.54992 * 110.61849 * 237.11680 * 2 1 3 5 5 C 1.54809 * 102.09058 * 204.31978 * 4 2 1 6 6 H 1.09001 * 110.60139 * 139.61597 * 5 4 2 7 7 C 1.53000 * 110.49143 * 262.20442 * 5 4 2 8 8 C 1.54098 * 104.19321 * 20.88307 * 5 4 2 9 9 H 1.08994 * 109.88246 * 121.59971 * 8 5 4 10 10 C 1.50699 * 109.88313 * 242.60837 * 8 5 4 11 11 O 1.20823 * 120.00393 * 114.98946 * 10 8 5 12 12 O 1.34230 * 119.99673 * 294.99942 * 10 8 5 13 13 C 1.45203 * 116.99899 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46890 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00501 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99626 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00048 * 179.97438 * 16 14 13 18 18 C 1.50688 * 109.47315 * 270.00230 * 17 16 14 19 19 H 1.07996 * 120.00358 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00178 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00224 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46824 * 60.00585 * 22 20 18 24 24 H 1.48504 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47186 * 300.00252 * 22 20 18 26 26 C 1.46500 * 120.00273 * 359.97438 * 16 14 13 27 27 C 1.52997 * 109.47473 * 270.00246 * 26 16 14 28 28 C 1.47194 * 109.47306 * 179.97438 * 27 26 16 29 29 N 9.06780 * 135.06130 * 24.72219 * 2 1 3 30 30 O 1.43746 * 107.28952 * 2.02922 * 8 5 4 31 31 H 1.09005 * 109.47031 * 182.87577 * 1 2 3 32 32 H 1.08998 * 109.47190 * 302.88466 * 1 2 3 33 33 H 1.09000 * 109.46862 * 62.87991 * 1 2 3 34 34 H 1.08996 * 110.90836 * 86.12635 * 4 2 1 35 35 H 1.09001 * 110.94337 * 322.53232 * 4 2 1 36 36 H 1.08994 * 109.47714 * 174.76658 * 7 5 4 37 37 H 1.08999 * 109.47106 * 294.77013 * 7 5 4 38 38 H 1.09005 * 109.46758 * 54.76862 * 7 5 4 39 39 H 1.08997 * 109.47037 * 59.99382 * 13 12 10 40 40 H 1.09004 * 109.46876 * 299.99812 * 13 12 10 41 41 H 1.09001 * 109.46688 * 30.00138 * 17 16 14 42 42 H 1.08998 * 109.47230 * 149.99606 * 17 16 14 43 43 H 0.96991 * 120.00458 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47129 * 149.99989 * 26 16 14 45 45 H 1.08998 * 109.46845 * 30.00795 * 26 16 14 46 46 H 1.09002 * 109.47153 * 59.99757 * 27 26 16 47 47 H 1.09001 * 109.46832 * 299.99948 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7267 6 1 3.7032 -2.2335 -1.0359 7 6 4.5468 -0.2502 -1.2557 8 6 3.3875 -1.1219 0.8088 9 1 3.6133 -2.0919 1.2516 10 6 4.3557 -0.0870 1.3213 11 8 3.9426 0.9121 1.8608 12 8 5.6770 -0.2751 1.1783 13 6 6.5505 0.7633 1.6951 14 6 7.9869 0.3810 1.4469 15 8 8.2488 -0.6638 0.8897 16 7 8.9805 1.2004 1.8441 17 6 10.3769 0.8286 1.6033 18 6 10.8970 0.0414 2.7783 19 1 10.2518 -0.1620 3.6201 20 6 12.1962 -0.4200 2.7783 21 7 12.9819 -0.1728 1.7530 22 14 12.8411 -1.3952 4.2352 23 1 12.0244 -2.6232 4.4094 24 1 14.2566 -1.7722 3.9910 25 1 12.7553 -0.5652 5.4635 26 6 8.6642 2.4629 2.5167 27 6 8.5122 3.5722 1.4740 28 6 8.1938 4.8405 2.1497 29 7 7.9488 5.8180 2.6787 30 8 2.0416 -0.7348 1.1328 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3633 0.5580 0.8630 33 1 -0.3633 0.4685 -0.9147 34 1 2.1484 -0.1453 -2.0958 35 1 1.4568 -1.6601 -1.4272 36 1 5.5147 -0.5082 -0.8261 37 1 4.5991 -0.3275 -2.3417 38 1 4.2857 0.7705 -0.9762 39 1 6.3850 0.8773 2.7664 40 1 6.3325 1.7052 1.1917 41 1 10.4404 0.2198 0.7014 42 1 10.9762 1.7301 1.4760 43 1 13.8958 -0.4977 1.7528 44 1 9.4693 2.7194 3.2053 45 1 7.7321 2.3554 3.0714 46 1 7.7071 3.3157 0.7853 47 1 9.4443 3.6796 0.9193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800297058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:53 Heat of formation + Delta-G solvation = -157.799378 kcal Electronic energy + Delta-G solvation = -29957.451516 eV Core-core repulsion = 25719.124947 eV Total energy + Delta-G solvation = -4238.326569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28466 -40.91194 -39.97707 -38.04553 -37.49234 -36.69739 -34.89455 -34.67898 -33.19636 -32.23795 -30.84639 -28.81277 -27.77769 -27.61356 -25.38575 -24.66902 -23.50697 -21.96066 -21.32078 -20.30625 -18.97533 -18.88885 -18.39302 -18.13389 -17.92921 -17.56475 -17.10530 -16.95402 -16.78430 -16.23160 -15.85843 -15.71775 -15.11529 -14.93031 -14.69880 -14.54192 -14.37499 -13.94657 -13.88312 -13.77884 -13.60839 -13.59255 -13.46920 -13.22931 -13.20003 -12.96419 -12.95750 -12.75089 -12.60731 -12.51447 -12.22249 -12.18359 -12.06045 -11.97967 -11.79795 -11.69727 -11.47159 -11.39251 -10.84699 -10.65120 -10.57363 -9.57868 -8.18001 -6.29696 1.01962 1.17623 1.41854 1.44185 1.50725 1.57261 1.76672 1.79526 2.28227 2.44964 2.70623 3.02141 3.14620 3.36205 3.52657 3.56142 3.62174 3.89388 3.95129 3.96761 4.03686 4.07409 4.11728 4.25921 4.37148 4.43074 4.50244 4.52931 4.72897 4.78067 4.82049 4.88173 4.99606 5.00082 5.03383 5.13229 5.15292 5.21340 5.27382 5.33095 5.37825 5.56345 5.70004 5.83582 6.11707 6.52150 6.57337 6.65184 6.78994 7.25440 7.42673 8.88740 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002924 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.949150 B = 9574.910318 C =11010.780819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 H 0.058 0.942 4 C -0.137 4.137 5 C -0.108 4.108 6 H 0.122 0.878 7 C -0.165 4.165 8 C 0.086 3.914 9 H 0.151 0.849 10 C 0.449 3.551 11 O -0.524 6.524 12 O -0.335 6.335 13 C 0.049 3.951 14 C 0.509 3.491 15 O -0.563 6.563 16 N -0.590 5.590 17 C 0.261 3.739 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.955 3.045 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.265 1.265 26 C 0.107 3.893 27 C -0.039 4.039 28 C 0.244 3.756 29 N -0.488 5.488 30 O -0.359 6.359 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.010 0.990 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.133 0.867 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.961 0.779 -7.519 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.002 4.002 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.126 4.126 6 H 0.140 0.860 7 C -0.222 4.222 8 C 0.027 3.973 9 H 0.168 0.832 10 C 0.292 3.708 11 O -0.413 6.413 12 O -0.251 6.251 13 C -0.027 4.027 14 C 0.296 3.704 15 O -0.441 6.441 16 N -0.322 5.322 17 C 0.141 3.859 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.185 4.185 21 N -0.563 5.563 22 Si 0.781 3.219 23 H -0.205 1.205 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.017 4.017 27 C -0.080 4.080 28 C -0.074 4.074 29 N -0.166 5.166 30 O -0.277 6.277 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.028 0.972 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.151 0.849 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.207 1.945 -6.726 23.284 hybrid contribution 1.225 -0.538 0.734 1.526 sum -20.982 1.407 -5.992 21.866 Atomic orbital electron populations 1.21764 0.91061 1.03584 1.03352 1.23487 0.96815 0.95115 0.84777 0.92386 1.23327 0.94239 1.01714 0.98135 1.22504 0.96965 1.03435 0.89713 0.85998 1.22212 0.98977 0.97826 1.03159 1.22718 0.81070 0.95315 0.98235 0.83212 1.24979 0.82338 0.87918 0.75529 1.90650 1.79224 1.30367 1.41033 1.86655 1.17568 1.47810 1.73087 1.22927 0.86128 0.91414 1.02265 1.20356 0.86972 0.83996 0.79084 1.90711 1.84734 1.25241 1.43415 1.47987 1.06924 1.19677 1.57578 1.18900 0.75862 0.95662 0.95516 1.21711 0.97029 1.35092 1.04382 0.92835 1.25674 0.97178 0.96988 0.98683 1.69999 1.07818 1.47045 1.31457 0.85651 0.77187 0.79113 0.79971 1.20479 1.20740 1.18980 1.21615 1.04149 0.81679 0.94273 1.19845 1.06908 0.83364 0.97842 1.29232 0.91465 0.94179 0.92489 1.81348 1.11295 1.13486 1.10470 1.89005 1.23649 1.73269 1.41796 0.90957 0.92680 0.88765 0.88072 0.87976 0.91419 0.89694 0.93786 0.87124 0.85701 0.97160 0.93989 0.92500 0.88842 0.88140 0.84911 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.66 71.98 0.70 -0.98 16 2 C 0.05 0.90 3.87 31.28 0.12 1.02 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.14 -1.54 6.14 31.89 0.20 -1.34 16 5 C -0.11 -1.60 3.64 -9.80 -0.04 -1.63 16 6 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.16 -2.90 7.86 71.98 0.57 -2.34 16 8 C 0.09 1.74 4.00 30.22 0.12 1.86 16 9 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 10 C 0.45 11.64 5.58 71.24 0.40 12.04 16 11 O -0.52 -15.87 16.23 28.32 0.46 -15.41 16 12 O -0.34 -9.47 7.35 -45.06 -0.33 -9.80 16 13 C 0.05 1.31 4.50 71.24 0.32 1.63 16 14 C 0.51 18.21 7.75 87.66 0.68 18.89 16 15 O -0.56 -26.09 16.08 15.78 0.25 -25.83 16 16 N -0.59 -20.47 2.46 -826.19 -2.03 -22.50 16 17 C 0.26 12.11 5.16 85.63 0.44 12.55 16 18 C -0.54 -28.60 9.39 25.60 0.24 -28.36 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.78 5.46 84.65 0.46 1.24 16 21 N -0.92 -52.32 13.29 21.45 0.28 -52.03 16 22 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 C 0.11 2.57 5.17 86.38 0.45 3.02 16 27 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 28 C 0.24 5.42 15.44 89.42 1.38 6.80 16 29 N -0.49 -13.93 18.55 20.03 0.37 -13.56 16 30 O -0.36 -7.95 10.46 -130.22 -1.36 -9.32 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.86 7.86 -2.39 -0.02 0.85 16 35 H 0.10 0.82 8.06 -2.39 -0.02 0.80 16 36 H 0.07 1.57 5.91 -2.39 -0.01 1.56 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 0.82 7.49 -2.38 -0.02 0.81 16 39 H 0.11 2.65 7.40 -2.39 -0.02 2.64 16 40 H 0.13 2.50 7.18 -2.39 -0.02 2.49 16 41 H 0.01 0.56 7.42 -2.39 -0.02 0.54 16 42 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 43 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 45 H 0.10 1.94 6.44 -2.39 -0.02 1.93 16 46 H 0.13 1.72 7.22 -2.39 -0.02 1.70 16 47 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -76.27 397.30 6.86 -69.41 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.98 Total: 10.21 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.21 Total: 23.88 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -1.37 Total: -88.09 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -0.98 Total: -60.36 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -76.27 6.86 -69.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.387 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds