Wall clock time and date at job start Tue Mar 31 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.41877 * 2 1 4 4 C 1.54474 * 110.37248 * 237.68612 * 2 1 3 5 5 C 1.54512 * 104.06320 * 217.19357 * 4 2 1 6 6 H 1.09006 * 110.50843 * 241.35852 * 5 4 2 7 7 C 1.52998 * 110.51251 * 118.64777 * 5 4 2 8 8 C 1.54476 * 104.06131 * 359.97438 * 5 4 2 9 9 H 1.09009 * 110.46769 * 265.09903 * 8 5 4 10 10 C 1.50696 * 110.37022 * 142.81437 * 8 5 4 11 11 O 1.20834 * 119.99886 * 248.16326 * 10 8 5 12 12 O 1.34228 * 120.00739 * 68.16826 * 10 8 5 13 13 C 1.45199 * 117.00617 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46942 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00521 * 359.72830 * 14 13 12 16 16 N 1.34784 * 119.99774 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99893 * 179.72962 * 16 14 13 18 18 C 1.50697 * 109.47293 * 90.00297 * 17 16 14 19 19 H 1.07997 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00091 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47351 * 59.99383 * 22 20 18 24 24 H 1.48496 * 109.47133 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46935 * 299.99671 * 22 20 18 26 26 C 1.46499 * 119.99971 * 359.72768 * 16 14 13 27 27 C 1.52999 * 109.47276 * 89.99654 * 26 16 14 28 28 C 1.47198 * 109.47424 * 179.97438 * 27 26 16 29 29 N 9.00108 * 109.33138 * 110.52295 * 5 1 2 30 30 O 1.44420 * 104.80415 * 23.98239 * 8 5 4 31 31 H 1.08998 * 109.47175 * 299.14846 * 1 2 3 32 32 H 1.09002 * 109.47051 * 59.14811 * 1 2 3 33 33 H 1.09006 * 109.47139 * 179.14449 * 1 2 3 34 34 H 1.09001 * 110.51318 * 335.83429 * 4 2 1 35 35 H 1.09001 * 110.51172 * 98.54969 * 4 2 1 36 36 H 1.09001 * 109.46900 * 305.35514 * 7 5 4 37 37 H 1.08997 * 109.47280 * 65.35585 * 7 5 4 38 38 H 1.09002 * 109.46609 * 185.35691 * 7 5 4 39 39 H 1.09001 * 109.46799 * 60.00124 * 13 12 10 40 40 H 1.08993 * 109.47220 * 299.99875 * 13 12 10 41 41 H 1.08997 * 109.46865 * 210.00034 * 17 16 14 42 42 H 1.08998 * 109.47058 * 329.99547 * 17 16 14 43 43 H 0.96995 * 120.00744 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47416 * 209.99869 * 26 16 14 45 45 H 1.09008 * 109.47058 * 330.00468 * 26 16 14 46 46 H 1.08998 * 109.47074 * 300.00425 * 27 26 16 47 47 H 1.09007 * 109.46853 * 59.99785 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2238 5 6 3.3177 -1.5058 -0.6857 6 1 4.2109 -1.1774 -1.2173 7 6 3.1461 -3.0212 -0.8082 8 6 3.3876 -1.0866 0.7995 9 1 4.0533 -0.2324 0.9235 10 6 3.8533 -2.2410 1.6489 11 8 3.0925 -2.7618 2.4300 12 8 5.1131 -2.6906 1.5381 13 6 5.4925 -3.8052 2.3879 14 6 6.9311 -4.1696 2.1259 15 8 7.5721 -3.5541 1.3005 16 7 7.5042 -5.1827 2.8055 17 6 8.9009 -5.5408 2.5466 18 6 9.8000 -4.7518 3.4632 19 1 9.3736 -4.0531 4.1678 20 6 11.1669 -4.9210 3.4015 21 7 11.6862 -5.7715 2.5431 22 14 12.2814 -3.9425 4.5372 23 1 11.9448 -4.2533 5.9497 24 1 13.6972 -4.3056 4.2748 25 1 12.0882 -2.4910 4.2902 26 6 6.7302 -5.9258 3.8030 27 6 6.0342 -7.1103 3.1296 28 6 5.2571 -7.8574 4.1319 29 7 4.6553 -8.4377 4.8981 30 8 2.0332 -0.7228 1.1443 31 1 -0.3633 0.5005 0.8975 32 1 -0.3633 0.5270 -0.8823 33 1 -0.3634 -1.0276 -0.0153 34 1 1.3276 -1.4920 -1.5771 35 1 2.3430 -0.0840 -2.0215 36 1 2.2241 -3.3237 -0.3116 37 1 3.0991 -3.2976 -1.8615 38 1 3.9929 -3.5218 -0.3386 39 1 4.8554 -4.6621 2.1691 40 1 5.3738 -3.5217 3.4336 41 1 9.0424 -6.6063 2.7277 42 1 9.1484 -5.3126 1.5099 43 1 12.6478 -5.8909 2.5000 44 1 7.3985 -6.2923 4.5822 45 1 5.9818 -5.2685 4.2456 46 1 5.3659 -6.7439 2.3504 47 1 6.7826 -7.7677 2.6868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800297059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:57 Heat of formation + Delta-G solvation = -138.091559 kcal Electronic energy + Delta-G solvation = -29697.931838 eV Core-core repulsion = 25460.459864 eV Total energy + Delta-G solvation = -4237.471974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15002 -39.76993 -38.96813 -36.95457 -36.35992 -35.30630 -33.90453 -32.96637 -32.55809 -30.93554 -29.57377 -27.56781 -27.32745 -26.40330 -24.11305 -22.99272 -22.10500 -21.56751 -20.44112 -18.91975 -17.87113 -17.69326 -17.32740 -16.96732 -16.58344 -16.46804 -16.13185 -15.72749 -15.45561 -14.77275 -14.65467 -14.53803 -14.29283 -13.93234 -13.81002 -13.57096 -13.10952 -12.95332 -12.84269 -12.77097 -12.61491 -12.49877 -12.47635 -12.24141 -12.12990 -11.82066 -11.68748 -11.53728 -11.34382 -11.15764 -11.08698 -11.05069 -10.99247 -10.69602 -10.65382 -10.49679 -10.24260 -10.08331 -9.79504 -9.17447 -8.51443 -7.98939 -6.13591 -4.18662 2.01868 2.09201 2.71202 2.81227 3.08158 3.28300 3.33046 3.35699 3.44344 3.68763 4.03176 4.09257 4.31636 4.37759 4.39392 4.56559 4.71711 4.76535 4.79943 4.91448 4.94679 4.98744 5.05100 5.11501 5.16444 5.19498 5.22229 5.26454 5.32861 5.41380 5.46430 5.55979 5.63865 5.74595 5.76959 5.78651 5.94383 5.99535 6.20861 6.39202 6.80955 7.23854 7.31926 7.55926 7.62782 7.81900 8.06995 8.10792 8.68699 8.86935 9.47065 10.94550 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.002826 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.792119 B = 9907.226492 C =11417.417897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.111 4.111 6 H 0.103 0.897 7 C -0.157 4.157 8 C 0.089 3.911 9 H 0.110 0.890 10 C 0.471 3.529 11 O -0.490 6.490 12 O -0.325 6.325 13 C 0.046 3.954 14 C 0.510 3.490 15 O -0.508 6.508 16 N -0.591 5.591 17 C 0.247 3.753 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.112 3.888 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.441 5.441 30 O -0.344 6.344 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 7.732 -7.950 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.093 0.907 4 C -0.185 4.185 5 C -0.130 4.130 6 H 0.121 0.879 7 C -0.214 4.214 8 C 0.029 3.971 9 H 0.128 0.872 10 C 0.312 3.688 11 O -0.376 6.376 12 O -0.241 6.241 13 C -0.032 4.032 14 C 0.294 3.706 15 O -0.383 6.383 16 N -0.325 5.325 17 C 0.129 3.871 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.014 4.014 27 C -0.093 4.093 28 C -0.102 4.102 29 N -0.119 5.119 30 O -0.263 6.263 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.612 6.884 -6.883 21.895 hybrid contribution 1.002 0.632 0.409 1.253 sum -18.610 7.517 -6.474 21.089 Atomic orbital electron populations 1.21799 0.92655 1.03208 1.02645 1.23102 0.95766 0.95480 0.84624 0.90694 1.23157 0.97162 0.99859 0.98297 1.22467 0.99945 0.97619 0.92950 0.87921 1.22013 1.02716 0.93681 1.03018 1.22441 0.87045 0.94620 0.92953 0.87202 1.23056 0.80299 0.83911 0.81558 1.90693 1.54936 1.56538 1.35469 1.86546 1.29743 1.47691 1.60110 1.23015 0.96156 0.88634 0.95365 1.19704 0.86854 0.81434 0.82565 1.90742 1.63856 1.50381 1.33290 1.48162 1.14640 1.31546 1.38128 1.19418 0.73030 0.96103 0.98599 1.21363 0.91275 1.24174 1.20291 0.92325 1.24906 0.97971 0.95308 0.95682 1.69900 1.12478 1.35235 1.35538 0.86560 0.79430 0.80618 0.80853 1.20218 1.21172 1.20115 1.21410 0.95974 0.92035 0.92025 1.19885 0.98315 0.97235 0.93828 1.28941 0.93449 0.93621 0.94199 1.81130 1.10351 1.09921 1.10453 1.89245 1.24634 1.74438 1.37977 0.91629 0.90869 0.91597 0.89841 0.89792 0.92003 0.91282 0.91457 0.88658 0.88378 0.94293 0.93328 0.92527 0.88144 0.90618 0.87693 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.52 37.16 0.35 -0.59 16 2 C 0.07 0.53 3.92 -25.96 -0.10 0.42 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.15 -0.98 6.28 -25.16 -0.16 -1.14 16 5 C -0.11 -0.97 3.63 -89.05 -0.32 -1.29 16 6 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 7 C -0.16 -1.50 8.10 37.16 0.30 -1.20 16 8 C 0.09 0.97 3.74 -27.11 -0.10 0.87 16 9 H 0.11 1.02 8.14 -51.92 -0.42 0.59 16 10 C 0.47 6.53 5.48 36.00 0.20 6.73 16 11 O -0.49 -7.92 16.30 -25.29 -0.41 -8.33 16 12 O -0.33 -4.86 8.87 -45.90 -0.41 -5.26 16 13 C 0.05 0.65 4.50 36.00 0.16 0.81 16 14 C 0.51 9.29 7.75 -10.98 -0.09 9.20 16 15 O -0.51 -11.64 16.08 -14.10 -0.23 -11.87 16 16 N -0.59 -10.47 2.46 -175.06 -0.43 -10.90 16 17 C 0.25 5.64 5.16 -5.20 -0.03 5.61 16 18 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 19 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 22 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.11 1.45 5.17 -4.04 -0.02 1.42 16 27 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 28 C 0.22 2.64 15.43 -20.83 -0.32 2.32 16 29 N -0.44 -6.60 18.52 42.08 0.78 -5.82 16 30 O -0.34 -4.05 10.60 -54.47 -0.58 -4.63 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.08 0.53 7.45 -51.93 -0.39 0.14 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.75 6.35 -51.93 -0.33 0.42 16 39 H 0.10 1.10 7.16 -51.93 -0.37 0.72 16 40 H 0.10 1.28 7.38 -51.93 -0.38 0.89 16 41 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 44 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 45 H 0.08 0.83 6.44 -51.92 -0.33 0.50 16 46 H 0.11 0.88 7.20 -51.93 -0.37 0.50 16 47 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -34.61 399.62 -7.43 -42.05 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.18 Total: -2.80 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.72 Total: 9.89 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 1.09 Total: -40.95 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.62 Total: -30.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.61 -7.43 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.043 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds