Wall clock time and date at job start Tue Mar 31 2020 22:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.41877 * 2 1 4 4 C 1.54474 * 110.37248 * 237.68612 * 2 1 3 5 5 C 1.54512 * 104.06320 * 217.19357 * 4 2 1 6 6 H 1.09006 * 110.50843 * 241.35852 * 5 4 2 7 7 C 1.52998 * 110.51251 * 118.64777 * 5 4 2 8 8 C 1.54476 * 104.06131 * 359.97438 * 5 4 2 9 9 H 1.09009 * 110.46769 * 265.09903 * 8 5 4 10 10 C 1.50696 * 110.37022 * 142.81437 * 8 5 4 11 11 O 1.20834 * 119.99886 * 248.16326 * 10 8 5 12 12 O 1.34228 * 120.00739 * 68.16826 * 10 8 5 13 13 C 1.45199 * 117.00617 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46942 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00521 * 359.72830 * 14 13 12 16 16 N 1.34784 * 119.99774 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99893 * 179.72962 * 16 14 13 18 18 C 1.50697 * 109.47293 * 90.00297 * 17 16 14 19 19 H 1.07997 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00091 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47351 * 59.99383 * 22 20 18 24 24 H 1.48496 * 109.47133 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46935 * 299.99671 * 22 20 18 26 26 C 1.46499 * 119.99971 * 359.72768 * 16 14 13 27 27 C 1.52999 * 109.47276 * 89.99654 * 26 16 14 28 28 C 1.47198 * 109.47424 * 179.97438 * 27 26 16 29 29 N 9.00108 * 109.33138 * 110.52295 * 5 1 2 30 30 O 1.44420 * 104.80415 * 23.98239 * 8 5 4 31 31 H 1.08998 * 109.47175 * 299.14846 * 1 2 3 32 32 H 1.09002 * 109.47051 * 59.14811 * 1 2 3 33 33 H 1.09006 * 109.47139 * 179.14449 * 1 2 3 34 34 H 1.09001 * 110.51318 * 335.83429 * 4 2 1 35 35 H 1.09001 * 110.51172 * 98.54969 * 4 2 1 36 36 H 1.09001 * 109.46900 * 305.35514 * 7 5 4 37 37 H 1.08997 * 109.47280 * 65.35585 * 7 5 4 38 38 H 1.09002 * 109.46609 * 185.35691 * 7 5 4 39 39 H 1.09001 * 109.46799 * 60.00124 * 13 12 10 40 40 H 1.08993 * 109.47220 * 299.99875 * 13 12 10 41 41 H 1.08997 * 109.46865 * 210.00034 * 17 16 14 42 42 H 1.08998 * 109.47058 * 329.99547 * 17 16 14 43 43 H 0.96995 * 120.00744 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47416 * 209.99869 * 26 16 14 45 45 H 1.09008 * 109.47058 * 330.00468 * 26 16 14 46 46 H 1.08998 * 109.47074 * 300.00425 * 27 26 16 47 47 H 1.09007 * 109.46853 * 59.99785 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2238 5 6 3.3177 -1.5058 -0.6857 6 1 4.2109 -1.1774 -1.2173 7 6 3.1461 -3.0212 -0.8082 8 6 3.3876 -1.0866 0.7995 9 1 4.0533 -0.2324 0.9235 10 6 3.8533 -2.2410 1.6489 11 8 3.0925 -2.7618 2.4300 12 8 5.1131 -2.6906 1.5381 13 6 5.4925 -3.8052 2.3879 14 6 6.9311 -4.1696 2.1259 15 8 7.5721 -3.5541 1.3005 16 7 7.5042 -5.1827 2.8055 17 6 8.9009 -5.5408 2.5466 18 6 9.8000 -4.7518 3.4632 19 1 9.3736 -4.0531 4.1678 20 6 11.1669 -4.9210 3.4015 21 7 11.6862 -5.7715 2.5431 22 14 12.2814 -3.9425 4.5372 23 1 11.9448 -4.2533 5.9497 24 1 13.6972 -4.3056 4.2748 25 1 12.0882 -2.4910 4.2902 26 6 6.7302 -5.9258 3.8030 27 6 6.0342 -7.1103 3.1296 28 6 5.2571 -7.8574 4.1319 29 7 4.6553 -8.4377 4.8981 30 8 2.0332 -0.7228 1.1443 31 1 -0.3633 0.5005 0.8975 32 1 -0.3633 0.5270 -0.8823 33 1 -0.3634 -1.0276 -0.0153 34 1 1.3276 -1.4920 -1.5771 35 1 2.3430 -0.0840 -2.0215 36 1 2.2241 -3.3237 -0.3116 37 1 3.0991 -3.2976 -1.8615 38 1 3.9929 -3.5218 -0.3386 39 1 4.8554 -4.6621 2.1691 40 1 5.3738 -3.5217 3.4336 41 1 9.0424 -6.6063 2.7277 42 1 9.1484 -5.3126 1.5099 43 1 12.6478 -5.8909 2.5000 44 1 7.3985 -6.2923 4.5822 45 1 5.9818 -5.2685 4.2456 46 1 5.3659 -6.7439 2.3504 47 1 6.7826 -7.7677 2.6868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800297059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:56 Heat of formation + Delta-G solvation = -158.087752 kcal Electronic energy + Delta-G solvation = -29698.798938 eV Core-core repulsion = 25460.459864 eV Total energy + Delta-G solvation = -4238.339074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14613 -40.90774 -40.10552 -38.09493 -37.51997 -36.72632 -34.88771 -34.61909 -33.18732 -32.24045 -30.89215 -28.87128 -27.97279 -27.63172 -25.37947 -24.62118 -23.04423 -22.17273 -21.32763 -20.32201 -18.98479 -18.77475 -18.39949 -18.23219 -18.05288 -17.41905 -17.41435 -16.97086 -16.44329 -16.25670 -15.84007 -15.69577 -15.23482 -14.94524 -14.79541 -14.58882 -14.32677 -14.17738 -13.78775 -13.71975 -13.60894 -13.57688 -13.53971 -13.35197 -13.18339 -13.01459 -12.96804 -12.75009 -12.51665 -12.37890 -12.27175 -12.18178 -12.06286 -11.80023 -11.76793 -11.68962 -11.62216 -11.44480 -10.82060 -10.69879 -10.57154 -9.58206 -8.17667 -6.29388 0.97666 1.03837 1.42151 1.44502 1.51005 1.57830 1.77510 1.82839 2.22737 2.44568 2.89926 3.03539 3.15005 3.35603 3.47849 3.54200 3.72993 3.84396 3.93365 3.95579 4.06927 4.07634 4.12340 4.18766 4.37068 4.41607 4.51079 4.55445 4.68899 4.77205 4.78718 4.89033 4.99522 5.00465 5.02108 5.04840 5.15014 5.20538 5.24937 5.28962 5.33180 5.56372 5.74638 5.83648 6.11826 6.50623 6.57699 6.63582 6.79192 7.24684 7.42667 8.89112 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.002826 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.792119 B = 9907.226492 C =11417.417897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.111 4.111 6 H 0.115 0.885 7 C -0.156 4.156 8 C 0.084 3.916 9 H 0.127 0.873 10 C 0.473 3.527 11 O -0.517 6.517 12 O -0.338 6.338 13 C 0.052 3.948 14 C 0.509 3.491 15 O -0.564 6.564 16 N -0.589 5.589 17 C 0.261 3.739 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.279 1.279 26 C 0.107 3.893 27 C -0.040 4.040 28 C 0.245 3.755 29 N -0.487 5.487 30 O -0.373 6.373 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.043 0.957 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.133 0.867 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.262 8.702 -8.270 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.109 0.891 4 C -0.176 4.176 5 C -0.130 4.130 6 H 0.133 0.867 7 C -0.213 4.213 8 C 0.025 3.975 9 H 0.144 0.856 10 C 0.316 3.684 11 O -0.405 6.405 12 O -0.254 6.254 13 C -0.025 4.025 14 C 0.296 3.704 15 O -0.442 6.442 16 N -0.321 5.321 17 C 0.140 3.860 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.781 3.219 23 H -0.190 1.190 24 H -0.208 1.208 25 H -0.205 1.205 26 C -0.017 4.017 27 C -0.081 4.081 28 C -0.073 4.073 29 N -0.165 5.165 30 O -0.293 6.293 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.151 0.849 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.972 7.838 -7.175 23.511 hybrid contribution 1.380 0.347 0.489 1.505 sum -19.592 8.185 -6.685 22.260 Atomic orbital electron populations 1.21831 0.91916 1.02863 1.03550 1.23408 0.96440 0.96032 0.83906 0.89106 1.23152 0.96023 1.00048 0.98343 1.22543 1.01620 0.97191 0.91601 0.86728 1.21998 1.01190 0.94313 1.03792 1.22668 0.87258 0.93961 0.93611 0.85592 1.23665 0.79409 0.84081 0.81236 1.90669 1.55387 1.57652 1.36810 1.86551 1.30562 1.47935 1.60329 1.22968 0.93414 0.89952 0.96144 1.20341 0.88253 0.80457 0.81363 1.90714 1.65568 1.52227 1.35710 1.47988 1.13237 1.31970 1.38900 1.18909 0.75617 0.95728 0.95720 1.21711 0.92063 1.24067 1.20354 0.92781 1.25679 0.99514 0.96284 0.97083 1.70000 1.12729 1.36628 1.36978 0.85643 0.77771 0.78847 0.79612 1.18951 1.20766 1.20473 1.21633 0.96089 0.93078 0.90949 1.19852 0.98626 0.96085 0.93522 1.29043 0.92331 0.92584 0.93323 1.81171 1.12107 1.11456 1.11799 1.89222 1.24939 1.75108 1.40070 0.92285 0.88349 0.92604 0.89499 0.87220 0.93109 0.89530 0.93398 0.85514 0.86740 0.93927 0.97201 0.92505 0.88747 0.88033 0.84932 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.52 71.98 0.69 -0.93 16 2 C 0.06 0.79 3.92 31.10 0.12 0.91 16 3 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 4 C -0.14 -1.47 6.28 31.61 0.20 -1.27 16 5 C -0.11 -1.74 3.63 -9.78 -0.04 -1.77 16 6 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 7 C -0.16 -2.79 8.10 71.98 0.58 -2.20 16 8 C 0.08 1.74 3.74 30.35 0.11 1.86 16 9 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 10 C 0.47 12.74 5.48 71.23 0.39 13.13 16 11 O -0.52 -16.30 16.30 28.18 0.46 -15.84 16 12 O -0.34 -9.84 8.87 -45.04 -0.40 -10.24 16 13 C 0.05 1.39 4.50 71.24 0.32 1.71 16 14 C 0.51 18.38 7.75 87.65 0.68 19.05 16 15 O -0.56 -26.44 16.08 15.76 0.25 -26.18 16 16 N -0.59 -20.53 2.46 -826.16 -2.03 -22.56 16 17 C 0.26 12.12 5.16 85.63 0.44 12.56 16 18 C -0.54 -28.59 9.39 25.60 0.24 -28.35 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 20 C 0.01 0.75 5.46 84.65 0.46 1.22 16 21 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 22 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.11 2.56 5.17 86.38 0.45 3.01 16 27 C -0.04 -0.72 6.03 28.79 0.17 -0.54 16 28 C 0.24 5.48 15.43 89.46 1.38 6.86 16 29 N -0.49 -13.97 18.52 19.98 0.37 -13.60 16 30 O -0.37 -8.41 10.60 -130.58 -1.38 -9.79 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.73 8.12 -2.38 -0.02 0.71 16 34 H 0.09 0.88 7.45 -2.39 -0.02 0.86 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.04 6.35 -2.39 -0.02 1.02 16 39 H 0.13 2.58 7.16 -2.39 -0.02 2.56 16 40 H 0.11 2.73 7.38 -2.39 -0.02 2.71 16 41 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 42 H 0.01 0.54 7.42 -2.39 -0.02 0.52 16 43 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 45 H 0.10 1.95 6.44 -2.38 -0.02 1.94 16 46 H 0.13 1.75 7.20 -2.39 -0.02 1.74 16 47 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -77.47 399.62 6.76 -70.71 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.98 Total: 9.40 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.20 Total: 25.25 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -1.37 Total: -88.24 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.07 Total: -62.05 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.47 6.76 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.382 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds