Wall clock time and date at job start Tue Mar 31 2020 22:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.27468 * 2 1 4 4 C 1.54951 * 110.39349 * 237.85509 * 2 1 3 5 5 C 1.55446 * 100.98532 * 204.64680 * 4 2 1 6 6 H 1.08995 * 110.83938 * 275.88877 * 5 4 2 7 7 C 1.53007 * 110.91800 * 152.22901 * 5 4 2 8 8 C 1.54383 * 102.18965 * 34.04140 * 5 4 2 9 9 H 1.09005 * 109.83076 * 98.29169 * 8 5 4 10 10 C 1.50698 * 109.82969 * 219.17959 * 8 5 4 11 11 O 1.20822 * 119.99804 * 114.81405 * 10 8 5 12 12 O 1.34231 * 120.00053 * 294.81390 * 10 8 5 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47036 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 9.93141 * 136.72797 * 80.60372 * 2 1 3 30 30 O 1.43240 * 107.66057 * 338.73855 * 8 5 4 31 31 H 1.09001 * 109.47203 * 299.36148 * 1 2 3 32 32 H 1.09004 * 109.47045 * 59.35817 * 1 2 3 33 33 H 1.09001 * 109.47004 * 179.35750 * 1 2 3 34 34 H 1.09000 * 111.12274 * 322.51937 * 4 2 1 35 35 H 1.08999 * 111.12190 * 86.63540 * 4 2 1 36 36 H 1.08996 * 109.47199 * 307.20285 * 7 5 4 37 37 H 1.08997 * 109.47355 * 67.20574 * 7 5 4 38 38 H 1.09008 * 109.46693 * 187.20807 * 7 5 4 39 39 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 40 40 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 41 41 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 42 42 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 43 43 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 45 45 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 46 46 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 47 47 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2297 5 6 3.4733 -1.2022 -0.7170 6 1 4.2006 -0.4037 -0.8633 7 6 3.9334 -2.4917 -1.4001 8 6 3.2126 -1.4394 0.7860 9 1 3.0655 -2.5033 0.9724 10 6 4.3812 -0.9357 1.5933 11 8 4.2364 -0.0049 2.3499 12 8 5.5830 -1.5212 1.4718 13 6 6.6627 -0.9840 2.2804 14 6 7.9254 -1.7619 2.0131 15 8 7.9163 -2.6785 1.2189 16 7 9.0650 -1.4384 2.6558 17 6 10.2926 -2.1943 2.3955 18 6 11.0474 -1.5513 1.2605 19 1 10.6518 -0.6683 0.7808 20 6 12.2427 -2.0905 0.8346 21 7 12.9015 -1.5292 -0.1555 22 14 12.9271 -3.6175 1.6648 23 1 12.4192 -4.8281 0.9706 24 1 14.4104 -3.5945 1.5982 25 1 12.4957 -3.6440 3.0855 26 6 9.0761 -0.3309 3.6146 27 6 8.7411 -0.8612 5.0102 28 6 8.7528 0.2517 5.9738 29 7 8.7612 1.1114 6.7163 30 8 2.0286 -0.7157 1.1413 31 1 -0.3634 0.5039 0.8957 32 1 -0.3633 0.5238 -0.8842 33 1 -0.3633 -1.0276 -0.0115 34 1 1.4506 -1.6421 -1.4504 35 1 2.1509 -0.1203 -2.0991 36 1 3.1620 -3.2543 -1.2938 37 1 4.1107 -2.2991 -2.4582 38 1 4.8554 -2.8402 -0.9347 39 1 6.4021 -1.0664 3.3356 40 1 6.8204 0.0641 2.0258 41 1 10.9148 -2.1962 3.2905 42 1 10.0381 -3.2198 2.1277 43 1 13.7427 -1.9082 -0.4550 44 1 10.0647 0.1282 3.6280 45 1 8.3345 0.4118 3.3204 46 1 7.7525 -1.3202 4.9968 47 1 9.4826 -1.6038 5.3044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800297060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:00 Heat of formation + Delta-G solvation = -137.411872 kcal Electronic energy + Delta-G solvation = -29605.712414 eV Core-core repulsion = 25368.269913 eV Total energy + Delta-G solvation = -4237.442501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09122 -39.81394 -39.02139 -36.98875 -36.37736 -35.39479 -34.01027 -32.89798 -32.57563 -31.12221 -29.76339 -27.87807 -27.19833 -26.63781 -24.16878 -22.70222 -21.89788 -21.54398 -20.52971 -18.92462 -18.36471 -17.87669 -17.02312 -16.93953 -16.85273 -16.64677 -16.11506 -15.80517 -15.32513 -14.84499 -14.78240 -14.61552 -14.21474 -13.80725 -13.76607 -13.52673 -13.36823 -12.93281 -12.81240 -12.71320 -12.57346 -12.54890 -12.49946 -12.38552 -12.30221 -11.89227 -11.81644 -11.71261 -11.66260 -11.18785 -11.15873 -11.06848 -10.91807 -10.71323 -10.68966 -10.62221 -10.27853 -9.87579 -9.66233 -9.27901 -8.67750 -8.06254 -6.17080 -4.17607 2.02256 2.13741 2.64231 2.74741 2.99924 3.22666 3.27524 3.30088 3.35597 3.54170 3.95745 4.02276 4.29716 4.31273 4.39913 4.62572 4.68030 4.71774 4.81224 4.88134 4.92925 4.94309 5.05393 5.11779 5.12403 5.16293 5.19687 5.25302 5.34949 5.40363 5.47376 5.63921 5.64939 5.66089 5.80073 5.84419 5.93022 6.08475 6.20474 6.48910 6.51498 6.76576 7.03970 7.47752 7.50676 7.62067 7.88437 8.34107 8.63049 8.86042 9.41586 10.96043 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002961 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.944638 B = 9453.213152 C =11384.014903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.112 4.112 6 H 0.092 0.908 7 C -0.146 4.146 8 C 0.098 3.902 9 H 0.124 0.876 10 C 0.446 3.554 11 O -0.494 6.494 12 O -0.326 6.326 13 C 0.046 3.954 14 C 0.513 3.487 15 O -0.508 6.508 16 N -0.587 5.587 17 C 0.216 3.784 18 C -0.535 4.535 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.894 5.894 22 Si 0.875 3.125 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.112 3.888 27 C -0.051 4.051 28 C 0.214 3.786 29 N -0.439 5.439 30 O -0.347 6.347 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.194 -0.489 0.865 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.092 0.908 4 C -0.185 4.185 5 C -0.131 4.131 6 H 0.110 0.890 7 C -0.203 4.203 8 C 0.039 3.961 9 H 0.141 0.859 10 C 0.288 3.712 11 O -0.380 6.380 12 O -0.241 6.241 13 C -0.031 4.031 14 C 0.298 3.702 15 O -0.382 6.382 16 N -0.320 5.320 17 C 0.097 3.903 18 C -0.573 4.573 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.014 4.014 27 C -0.093 4.093 28 C -0.104 4.104 29 N -0.116 5.116 30 O -0.266 6.266 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.110 0.555 1.860 21.199 hybrid contribution 0.757 -0.772 0.092 1.085 sum -20.353 -0.217 1.951 20.447 Atomic orbital electron populations 1.21863 0.93014 1.03010 1.02705 1.23119 0.95273 0.95883 0.84419 0.90754 1.23494 0.95267 1.01225 0.98492 1.22674 0.98228 1.00912 0.91237 0.89004 1.21779 1.02670 0.94861 1.00982 1.22302 0.82631 0.97736 0.93459 0.85902 1.24210 0.84207 0.81244 0.81585 1.90676 1.84229 1.27237 1.35899 1.86548 1.17838 1.57714 1.61989 1.22956 0.85273 0.98958 0.95939 1.19726 0.83732 0.84814 0.81966 1.90735 1.84617 1.29681 1.33131 1.47801 1.10168 1.33470 1.40581 1.19790 0.80470 0.92761 0.97315 1.21282 1.05348 1.14175 1.16483 0.90588 1.24848 0.96499 0.96877 0.94645 1.69883 1.15966 1.40525 1.26835 0.86874 0.78459 0.84028 0.80445 1.19828 1.21069 1.18934 1.21434 1.05021 0.89377 0.85600 1.19879 1.05803 0.92204 0.91372 1.28982 0.93048 0.94353 0.94005 1.81225 1.09026 1.10732 1.10584 1.88539 1.38360 1.64873 1.34811 0.91642 0.90925 0.91711 0.89500 0.89224 0.92068 0.91513 0.90337 0.88603 0.88337 0.94576 0.94019 0.92426 0.87921 0.90283 0.87553 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.63 37.16 0.36 -0.61 16 2 C 0.07 0.60 4.07 -25.70 -0.10 0.49 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.01 6.04 -24.40 -0.15 -1.16 16 5 C -0.11 -1.01 3.12 -88.59 -0.28 -1.28 16 6 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 7 C -0.15 -1.23 9.15 37.16 0.34 -0.89 16 8 C 0.10 1.07 3.66 -27.16 -0.10 0.97 16 9 H 0.12 1.12 7.81 -51.93 -0.41 0.72 16 10 C 0.45 6.14 7.14 36.00 0.26 6.40 16 11 O -0.49 -7.96 16.27 -25.40 -0.41 -8.37 16 12 O -0.33 -4.80 9.75 -45.91 -0.45 -5.24 16 13 C 0.05 0.64 4.50 36.01 0.16 0.81 16 14 C 0.51 9.10 7.75 -10.98 -0.09 9.02 16 15 O -0.51 -11.25 16.08 -14.11 -0.23 -11.48 16 16 N -0.59 -10.05 2.46 -175.06 -0.43 -10.48 16 17 C 0.22 4.59 4.23 -5.19 -0.02 4.57 16 18 C -0.53 -14.08 9.94 -34.44 -0.34 -14.43 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 22 Si 0.88 20.11 27.47 -169.99 -4.67 15.44 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 26 C 0.11 1.40 5.17 -4.05 -0.02 1.38 16 27 C -0.05 -0.49 6.03 -29.51 -0.18 -0.67 16 28 C 0.21 2.53 15.43 -20.76 -0.32 2.21 16 29 N -0.44 -6.43 18.54 42.16 0.78 -5.65 16 30 O -0.35 -4.05 10.25 -54.93 -0.56 -4.61 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.10 1.08 7.18 -51.93 -0.37 0.71 16 40 H 0.10 1.27 7.39 -51.93 -0.38 0.89 16 41 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16 42 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 46 H 0.11 0.83 7.22 -51.93 -0.38 0.45 16 47 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -35.61 400.32 -6.97 -42.57 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.23 Total: -1.39 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.58 Total: 8.74 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.13 Total: -41.69 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.65 Total: -29.71 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.61 -6.97 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.838 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds