Wall clock time and date at job start Tue Mar 31 2020 22:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.27468 * 2 1 4 4 C 1.54951 * 110.39349 * 237.85509 * 2 1 3 5 5 C 1.55446 * 100.98532 * 204.64680 * 4 2 1 6 6 H 1.08995 * 110.83938 * 275.88877 * 5 4 2 7 7 C 1.53007 * 110.91800 * 152.22901 * 5 4 2 8 8 C 1.54383 * 102.18965 * 34.04140 * 5 4 2 9 9 H 1.09005 * 109.83076 * 98.29169 * 8 5 4 10 10 C 1.50698 * 109.82969 * 219.17959 * 8 5 4 11 11 O 1.20822 * 119.99804 * 114.81405 * 10 8 5 12 12 O 1.34231 * 120.00053 * 294.81390 * 10 8 5 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47036 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 9.93141 * 136.72797 * 80.60372 * 2 1 3 30 30 O 1.43240 * 107.66057 * 338.73855 * 8 5 4 31 31 H 1.09001 * 109.47203 * 299.36148 * 1 2 3 32 32 H 1.09004 * 109.47045 * 59.35817 * 1 2 3 33 33 H 1.09001 * 109.47004 * 179.35750 * 1 2 3 34 34 H 1.09000 * 111.12274 * 322.51937 * 4 2 1 35 35 H 1.08999 * 111.12190 * 86.63540 * 4 2 1 36 36 H 1.08996 * 109.47199 * 307.20285 * 7 5 4 37 37 H 1.08997 * 109.47355 * 67.20574 * 7 5 4 38 38 H 1.09008 * 109.46693 * 187.20807 * 7 5 4 39 39 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 40 40 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 41 41 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 42 42 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 43 43 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 45 45 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 46 46 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 47 47 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0700 -0.7728 -1.2297 5 6 3.4733 -1.2022 -0.7170 6 1 4.2006 -0.4037 -0.8633 7 6 3.9334 -2.4917 -1.4001 8 6 3.2126 -1.4394 0.7860 9 1 3.0655 -2.5033 0.9724 10 6 4.3812 -0.9357 1.5933 11 8 4.2364 -0.0049 2.3499 12 8 5.5830 -1.5212 1.4718 13 6 6.6627 -0.9840 2.2804 14 6 7.9254 -1.7619 2.0131 15 8 7.9163 -2.6785 1.2189 16 7 9.0650 -1.4384 2.6558 17 6 10.2926 -2.1943 2.3955 18 6 11.0474 -1.5513 1.2605 19 1 10.6518 -0.6683 0.7808 20 6 12.2427 -2.0905 0.8346 21 7 12.9015 -1.5292 -0.1555 22 14 12.9271 -3.6175 1.6648 23 1 12.4192 -4.8281 0.9706 24 1 14.4104 -3.5945 1.5982 25 1 12.4957 -3.6440 3.0855 26 6 9.0761 -0.3309 3.6146 27 6 8.7411 -0.8612 5.0102 28 6 8.7528 0.2517 5.9738 29 7 8.7612 1.1114 6.7163 30 8 2.0286 -0.7157 1.1413 31 1 -0.3634 0.5039 0.8957 32 1 -0.3633 0.5238 -0.8842 33 1 -0.3633 -1.0276 -0.0115 34 1 1.4506 -1.6421 -1.4504 35 1 2.1509 -0.1203 -2.0991 36 1 3.1620 -3.2543 -1.2938 37 1 4.1107 -2.2991 -2.4582 38 1 4.8554 -2.8402 -0.9347 39 1 6.4021 -1.0664 3.3356 40 1 6.8204 0.0641 2.0258 41 1 10.9148 -2.1962 3.2905 42 1 10.0381 -3.2198 2.1277 43 1 13.7427 -1.9082 -0.4550 44 1 10.0647 0.1282 3.6280 45 1 8.3345 0.4118 3.3204 46 1 7.7525 -1.3202 4.9968 47 1 9.4826 -1.6038 5.3044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800297060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:59 Heat of formation + Delta-G solvation = -159.311347 kcal Electronic energy + Delta-G solvation = -29606.662047 eV Core-core repulsion = 25368.269913 eV Total energy + Delta-G solvation = -4238.392133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10377 -40.96443 -40.12996 -38.08756 -37.53150 -36.75418 -34.84261 -34.73093 -33.24096 -32.43464 -31.08306 -29.21438 -27.85754 -27.68039 -25.32359 -24.31864 -22.86671 -22.26412 -21.37250 -20.28917 -19.35594 -19.21818 -18.58176 -18.09973 -17.90141 -17.74679 -17.22388 -16.96702 -16.47914 -15.99980 -15.82049 -15.72623 -15.45778 -15.01904 -14.74567 -14.44859 -14.41315 -14.23400 -13.93191 -13.84010 -13.75016 -13.62000 -13.39809 -13.31595 -13.11779 -13.05106 -12.93214 -12.73031 -12.63720 -12.39546 -12.37406 -12.12603 -11.96608 -11.84602 -11.78556 -11.68304 -11.63709 -11.50002 -10.82974 -10.75901 -10.66376 -9.57866 -8.26968 -6.32395 0.96244 1.06693 1.41424 1.45200 1.52259 1.54037 1.74337 1.82269 2.21963 2.37952 2.71490 3.00729 3.10418 3.26439 3.47283 3.51350 3.66973 3.83716 3.92259 3.94079 4.00567 4.05625 4.08957 4.20006 4.34173 4.45750 4.51104 4.55491 4.76356 4.76969 4.80972 4.84519 4.94775 4.95409 5.01303 5.05313 5.05539 5.16280 5.21265 5.30991 5.39084 5.49612 5.54818 5.79326 6.26966 6.45193 6.57359 6.60329 6.71127 7.18189 7.34000 8.89886 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002961 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.944638 B = 9453.213152 C =11384.014903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.134 4.134 5 C -0.112 4.112 6 H 0.076 0.924 7 C -0.141 4.141 8 C 0.097 3.903 9 H 0.142 0.858 10 C 0.448 3.552 11 O -0.521 6.521 12 O -0.338 6.338 13 C 0.050 3.950 14 C 0.511 3.489 15 O -0.560 6.560 16 N -0.586 5.586 17 C 0.223 3.777 18 C -0.536 4.536 19 H 0.030 0.970 20 C 0.009 3.991 21 N -0.949 5.949 22 Si 0.944 3.056 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.224 1.224 26 C 0.106 3.894 27 C -0.039 4.039 28 C 0.243 3.757 29 N -0.490 5.490 30 O -0.368 6.368 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.135 0.865 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.892 -1.745 2.129 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.003 3.997 3 H 0.083 0.917 4 C -0.171 4.171 5 C -0.130 4.130 6 H 0.095 0.905 7 C -0.198 4.198 8 C 0.038 3.962 9 H 0.159 0.841 10 C 0.291 3.709 11 O -0.410 6.410 12 O -0.253 6.253 13 C -0.027 4.027 14 C 0.298 3.702 15 O -0.438 6.438 16 N -0.318 5.318 17 C 0.101 3.899 18 C -0.574 4.574 19 H 0.048 0.952 20 C -0.188 4.188 21 N -0.590 5.590 22 Si 0.766 3.234 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.147 1.147 26 C -0.019 4.019 27 C -0.080 4.080 28 C -0.074 4.074 29 N -0.168 5.168 30 O -0.287 6.287 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.836 -0.663 3.170 23.064 hybrid contribution 1.242 -0.276 -0.386 1.330 sum -21.593 -0.939 2.784 21.792 Atomic orbital electron populations 1.21863 0.91316 1.03622 1.03311 1.23354 0.96608 0.95398 0.84367 0.91733 1.23487 0.93592 1.01934 0.98134 1.22676 0.99358 1.00748 0.90265 0.90540 1.21740 1.01997 0.95048 1.01042 1.22525 0.81433 0.98346 0.93930 0.84123 1.24871 0.84248 0.80600 0.81185 1.90653 1.84520 1.28494 1.37288 1.86562 1.18371 1.58084 1.62324 1.22959 0.83576 0.98393 0.97747 1.20332 0.84849 0.84228 0.80809 1.90709 1.85603 1.32116 1.35369 1.47721 1.08832 1.34035 1.41206 1.19522 0.81859 0.92070 0.96425 1.21596 1.05586 1.12701 1.17535 0.95210 1.25853 0.97063 1.00570 0.95354 1.70058 1.16778 1.42887 1.29243 0.85778 0.77363 0.78806 0.81404 1.20281 1.21134 1.14651 1.21641 1.05487 0.88403 0.86344 1.19880 1.08062 0.91509 0.88528 1.29183 0.91373 0.93651 0.93211 1.81270 1.10961 1.12203 1.12333 1.88525 1.38326 1.65235 1.36653 0.92532 0.88806 0.91100 0.87670 0.87548 0.90072 0.90697 0.93029 0.85211 0.87259 0.91407 0.95105 0.92495 0.88706 0.88493 0.84728 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.63 71.98 0.69 -0.89 16 2 C 0.06 0.93 4.07 31.26 0.13 1.06 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.13 -1.54 6.04 32.10 0.19 -1.35 16 5 C -0.11 -1.90 3.12 -9.48 -0.03 -1.93 16 6 H 0.08 1.52 7.84 -2.39 -0.02 1.50 16 7 C -0.14 -2.24 9.15 71.98 0.66 -1.58 16 8 C 0.10 2.01 3.66 30.32 0.11 2.13 16 9 H 0.14 2.38 7.81 -2.38 -0.02 2.36 16 10 C 0.45 12.08 7.14 71.24 0.51 12.59 16 11 O -0.52 -16.46 16.27 28.34 0.46 -16.00 16 12 O -0.34 -9.81 9.75 -45.07 -0.44 -10.25 16 13 C 0.05 1.33 4.50 71.24 0.32 1.65 16 14 C 0.51 17.81 7.75 87.66 0.68 18.49 16 15 O -0.56 -25.17 16.08 15.77 0.25 -24.91 16 16 N -0.59 -19.26 2.46 -826.16 -2.03 -21.29 16 17 C 0.22 9.16 4.23 85.64 0.36 9.52 16 18 C -0.54 -28.76 9.94 25.60 0.25 -28.51 16 19 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 20 C 0.01 0.52 5.47 84.65 0.46 0.98 16 21 N -0.95 -57.86 13.96 21.45 0.30 -57.56 16 22 Si 0.94 40.94 27.47 68.60 1.88 42.82 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.22 -8.19 6.54 99.48 0.65 -7.53 16 26 C 0.11 2.41 5.17 86.38 0.45 2.85 16 27 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 28 C 0.24 5.10 15.43 89.44 1.38 6.48 16 29 N -0.49 -13.61 18.54 20.01 0.37 -13.24 16 30 O -0.37 -8.23 10.25 -130.15 -1.33 -9.57 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.86 7.92 -2.39 -0.02 0.84 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.13 2.55 7.18 -2.39 -0.02 2.53 16 40 H 0.11 2.68 7.39 -2.39 -0.02 2.67 16 41 H 0.07 2.40 7.13 -2.39 -0.02 2.38 16 42 H 0.03 1.36 6.85 -2.39 -0.02 1.35 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.09 2.36 8.07 -2.38 -0.02 2.34 16 45 H 0.10 1.88 6.44 -2.39 -0.02 1.86 16 46 H 0.13 1.45 7.22 -2.39 -0.02 1.44 16 47 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -82.09 400.32 6.73 -75.36 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.92 Total: 13.58 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 6.34 Total: 21.06 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -1.36 Total: -92.09 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -1.06 Total: -60.73 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.82 kcal Total: -82.09 6.73 -75.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.953 kcal (2) G-P(sol) polarization free energy of solvation -82.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds