Wall clock time and date at job start Tue Mar 31 2020 22:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.55350 * 2 1 4 4 C 1.54993 * 110.62032 * 237.11957 * 2 1 3 5 5 C 1.54805 * 102.09764 * 204.31885 * 4 2 1 6 6 H 1.09003 * 110.49268 * 139.55310 * 5 4 2 7 7 C 1.53001 * 110.48940 * 262.20350 * 5 4 2 8 8 C 1.54104 * 104.18715 * 20.87963 * 5 4 2 9 9 H 1.09002 * 109.87889 * 242.60710 * 8 5 4 10 10 C 1.50696 * 109.87794 * 121.60200 * 8 5 4 11 11 O 1.20824 * 120.00549 * 245.30512 * 10 8 5 12 12 O 1.34235 * 120.00144 * 65.31129 * 10 8 5 13 13 C 1.45201 * 117.00145 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46686 * 180.02562 * 13 12 10 15 15 O 1.21277 * 120.00248 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00201 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47350 * 89.99715 * 17 16 14 19 19 H 1.08009 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00070 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00438 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99671 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 90.00470 * 22 20 18 24 24 H 1.48499 * 109.46877 * 210.00056 * 22 20 18 25 25 H 1.48501 * 109.47355 * 330.00162 * 22 20 18 26 26 C 1.46500 * 120.00177 * 359.97438 * 16 14 13 27 27 C 1.53004 * 109.47029 * 89.99971 * 26 16 14 28 28 C 1.47199 * 109.46979 * 180.02562 * 27 26 16 29 29 N 9.74794 * 101.03221 * 88.01234 * 4 1 2 30 30 O 1.43741 * 107.29067 * 2.03032 * 8 5 4 31 31 H 1.09000 * 109.47068 * 182.87777 * 1 2 3 32 32 H 1.09002 * 109.47214 * 302.87655 * 1 2 3 33 33 H 1.09001 * 109.47541 * 62.87877 * 1 2 3 34 34 H 1.09004 * 110.90886 * 86.11580 * 4 2 1 35 35 H 1.09008 * 110.90665 * 322.51705 * 4 2 1 36 36 H 1.08997 * 109.47153 * 174.76092 * 7 5 4 37 37 H 1.08997 * 109.47549 * 294.76371 * 7 5 4 38 38 H 1.08998 * 109.46672 * 54.76758 * 7 5 4 39 39 H 1.08999 * 109.46870 * 299.99623 * 13 12 10 40 40 H 1.08999 * 109.46822 * 60.00011 * 13 12 10 41 41 H 1.08997 * 109.47384 * 210.00496 * 17 16 14 42 42 H 1.09009 * 109.47128 * 329.99997 * 17 16 14 43 43 H 0.96997 * 120.00694 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47167 * 209.99991 * 26 16 14 45 45 H 1.09001 * 109.47040 * 330.00651 * 26 16 14 46 46 H 1.09003 * 109.46986 * 299.99742 * 27 26 16 47 47 H 1.08994 * 109.47285 * 60.00309 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2182 5 6 3.4810 -1.2122 -0.7269 6 1 3.7008 -2.2340 -1.0362 7 6 4.5467 -0.2502 -1.2560 8 6 3.3875 -1.1219 0.8086 9 1 4.0878 -0.3733 1.1793 10 6 3.6996 -2.4630 1.4208 11 8 2.8433 -3.0665 2.0228 12 8 4.9292 -2.9874 1.2973 13 6 5.1584 -4.2824 1.9126 14 6 6.5842 -4.7072 1.6725 15 8 7.3332 -3.9895 1.0442 16 7 7.0267 -5.8852 2.1551 17 6 8.4126 -6.2985 1.9212 18 6 9.2825 -5.7985 3.0456 19 1 8.8466 -5.2300 3.8538 20 6 10.6348 -6.0676 3.0430 21 7 11.1656 -6.7602 2.0592 22 14 11.7129 -5.4483 4.4372 23 1 11.7642 -6.4693 5.5143 24 1 13.0849 -5.1970 3.9277 25 1 11.1467 -4.1864 4.9778 26 6 6.1219 -6.7525 2.9136 27 6 5.4061 -7.7059 1.9546 28 6 4.4965 -8.5769 2.7166 29 7 3.7949 -9.2502 3.3039 30 8 2.0416 -0.7348 1.1326 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3634 0.5579 0.8631 33 1 -0.3634 0.4685 -0.9147 34 1 2.1482 -0.1452 -2.0959 35 1 1.4565 -1.6601 -1.4266 36 1 5.5146 -0.5082 -0.8263 37 1 4.5990 -0.3274 -2.3419 38 1 4.2856 0.7705 -0.9764 39 1 4.9763 -4.2124 2.9850 40 1 4.4816 -5.0169 1.4762 41 1 8.4649 -7.3864 1.8775 42 1 8.7623 -5.8798 0.9775 43 1 12.1168 -6.9499 2.0575 44 1 6.6949 -7.3295 3.6392 45 1 5.3853 -6.1414 3.4353 46 1 4.8330 -7.1288 1.2289 47 1 6.1426 -8.3170 1.4328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800297061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:03 Heat of formation + Delta-G solvation = -140.706438 kcal Electronic energy + Delta-G solvation = -29519.257866 eV Core-core repulsion = 25281.672503 eV Total energy + Delta-G solvation = -4237.585364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07421 -39.79225 -38.97408 -36.92737 -36.35753 -35.29534 -33.96576 -32.96804 -32.53913 -30.93365 -29.60565 -27.66507 -27.13343 -26.41794 -24.11418 -22.94380 -22.04466 -21.45064 -20.84488 -18.93246 -18.03065 -17.70831 -17.06590 -16.83126 -16.51446 -16.40916 -16.17002 -15.72440 -15.42750 -14.77219 -14.73153 -14.52574 -14.18786 -14.15849 -13.74474 -13.46457 -13.21172 -13.05030 -12.79081 -12.75756 -12.69952 -12.49227 -12.35372 -12.21658 -12.14706 -11.82647 -11.75811 -11.67978 -11.34823 -11.08618 -11.04859 -11.02646 -10.98607 -10.71852 -10.65549 -10.54383 -10.24093 -10.02916 -9.77692 -9.17110 -8.52079 -7.98782 -6.13850 -4.18797 2.01929 2.10591 2.69943 2.79987 3.08316 3.26268 3.33656 3.36769 3.42714 3.64913 4.01269 4.08316 4.32908 4.37984 4.41625 4.52789 4.72717 4.76967 4.79795 4.92719 4.95367 4.99130 5.03376 5.11818 5.16849 5.20984 5.22159 5.27383 5.35348 5.41429 5.43733 5.57138 5.66509 5.74612 5.76432 5.79562 5.95183 5.99432 6.21568 6.42563 6.80973 7.23828 7.32040 7.55802 7.63269 7.81849 8.07019 8.10722 8.68836 8.87104 9.47020 10.94332 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002840 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.537388 B = 9856.842027 C =11540.862089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.114 4.114 6 H 0.093 0.907 7 C -0.146 4.146 8 C 0.094 3.906 9 H 0.112 0.888 10 C 0.459 3.541 11 O -0.491 6.491 12 O -0.325 6.325 13 C 0.046 3.954 14 C 0.510 3.490 15 O -0.509 6.509 16 N -0.591 5.591 17 C 0.246 3.754 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.112 3.888 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.442 5.442 30 O -0.346 6.346 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 11.060 -7.658 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.186 4.186 5 C -0.133 4.133 6 H 0.112 0.888 7 C -0.203 4.203 8 C 0.035 3.965 9 H 0.130 0.870 10 C 0.300 3.700 11 O -0.377 6.377 12 O -0.241 6.241 13 C -0.032 4.032 14 C 0.295 3.705 15 O -0.383 6.383 16 N -0.325 5.325 17 C 0.128 3.872 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.014 4.014 27 C -0.092 4.092 28 C -0.103 4.103 29 N -0.119 5.119 30 O -0.265 6.265 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.281 10.113 -6.813 21.974 hybrid contribution 0.979 0.321 0.601 1.193 sum -17.302 10.435 -6.212 21.138 Atomic orbital electron populations 1.21776 0.92641 1.03380 1.02567 1.23244 0.95564 0.95332 0.84513 0.90562 1.23326 0.95343 1.01173 0.98726 1.22454 0.96594 1.02576 0.91663 0.88827 1.21872 0.98574 0.98162 1.01715 1.22245 0.87412 0.91518 0.95361 0.87046 1.23513 0.80451 0.87936 0.78089 1.90683 1.47654 1.61027 1.38320 1.86535 1.32048 1.34938 1.70530 1.23018 0.97322 0.83123 0.99691 1.19703 0.87499 0.82421 0.80918 1.90737 1.56764 1.51527 1.39255 1.48158 1.13938 1.17328 1.53055 1.19424 0.73601 0.95751 0.98411 1.21402 0.92867 1.35146 1.07611 0.92273 1.24906 0.97809 0.94982 0.96192 1.69906 1.12791 1.39106 1.31339 0.86502 0.79776 0.79265 0.81939 1.20618 1.21067 1.19830 1.21408 0.93511 0.93014 0.93503 1.19884 0.95795 0.96011 0.97528 1.29032 0.93647 0.93757 0.93818 1.81216 1.10807 1.10405 1.09451 1.88989 1.25640 1.73223 1.38683 0.91491 0.91657 0.90824 0.89307 0.90022 0.90825 0.91519 0.92252 0.88393 0.88670 0.94298 0.93318 0.92584 0.88147 0.90617 0.87696 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.66 37.15 0.36 -0.61 16 2 C 0.07 0.56 3.97 -25.68 -0.10 0.46 16 3 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.15 -1.04 6.14 -24.73 -0.15 -1.19 16 5 C -0.11 -1.00 3.27 -89.09 -0.29 -1.29 16 6 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 7 C -0.15 -1.09 8.91 37.16 0.33 -0.75 16 8 C 0.09 1.04 3.62 -27.31 -0.10 0.94 16 9 H 0.11 1.08 7.69 -51.93 -0.40 0.68 16 10 C 0.46 6.46 7.06 36.00 0.25 6.72 16 11 O -0.49 -8.06 16.28 -25.36 -0.41 -8.47 16 12 O -0.33 -4.92 9.75 -45.92 -0.45 -5.36 16 13 C 0.05 0.66 4.50 36.01 0.16 0.82 16 14 C 0.51 9.34 7.75 -10.99 -0.09 9.26 16 15 O -0.51 -11.67 16.08 -14.10 -0.23 -11.90 16 16 N -0.59 -10.51 2.46 -175.06 -0.43 -10.94 16 17 C 0.25 5.64 5.16 -5.20 -0.03 5.61 16 18 C -0.53 -13.87 9.39 -34.44 -0.32 -14.19 16 19 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 26 C 0.11 1.45 5.17 -4.04 -0.02 1.43 16 27 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 28 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 29 N -0.44 -6.63 18.54 42.16 0.78 -5.85 16 30 O -0.35 -4.11 10.46 -54.78 -0.57 -4.68 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.44 7.86 -51.93 -0.41 0.04 16 35 H 0.08 0.59 8.06 -51.92 -0.42 0.17 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 1.29 7.39 -51.93 -0.38 0.91 16 40 H 0.10 1.11 7.18 -51.93 -0.37 0.74 16 41 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.05 1.27 7.42 -51.92 -0.39 0.89 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 45 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 46 H 0.10 0.88 7.22 -51.93 -0.37 0.51 16 47 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -34.70 403.58 -7.34 -42.04 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.24 Total: -3.02 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -0.59 Total: 10.43 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 1.09 Total: -41.03 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.66 Total: -30.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.70 -7.34 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.663 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds