Wall clock time and date at job start Tue Mar 31 2020 22:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.55350 * 2 1 4 4 C 1.54993 * 110.62032 * 237.11957 * 2 1 3 5 5 C 1.54805 * 102.09764 * 204.31885 * 4 2 1 6 6 H 1.09003 * 110.49268 * 139.55310 * 5 4 2 7 7 C 1.53001 * 110.48940 * 262.20350 * 5 4 2 8 8 C 1.54104 * 104.18715 * 20.87963 * 5 4 2 9 9 H 1.09002 * 109.87889 * 242.60710 * 8 5 4 10 10 C 1.50696 * 109.87794 * 121.60200 * 8 5 4 11 11 O 1.20824 * 120.00549 * 245.30512 * 10 8 5 12 12 O 1.34235 * 120.00144 * 65.31129 * 10 8 5 13 13 C 1.45201 * 117.00145 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.46686 * 180.02562 * 13 12 10 15 15 O 1.21277 * 120.00248 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00201 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47350 * 89.99715 * 17 16 14 19 19 H 1.08009 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00070 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00438 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99671 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 90.00470 * 22 20 18 24 24 H 1.48499 * 109.46877 * 210.00056 * 22 20 18 25 25 H 1.48501 * 109.47355 * 330.00162 * 22 20 18 26 26 C 1.46500 * 120.00177 * 359.97438 * 16 14 13 27 27 C 1.53004 * 109.47029 * 89.99971 * 26 16 14 28 28 C 1.47199 * 109.46979 * 180.02562 * 27 26 16 29 29 N 9.74794 * 101.03221 * 88.01234 * 4 1 2 30 30 O 1.43741 * 107.29067 * 2.03032 * 8 5 4 31 31 H 1.09000 * 109.47068 * 182.87777 * 1 2 3 32 32 H 1.09002 * 109.47214 * 302.87655 * 1 2 3 33 33 H 1.09001 * 109.47541 * 62.87877 * 1 2 3 34 34 H 1.09004 * 110.90886 * 86.11580 * 4 2 1 35 35 H 1.09008 * 110.90665 * 322.51705 * 4 2 1 36 36 H 1.08997 * 109.47153 * 174.76092 * 7 5 4 37 37 H 1.08997 * 109.47549 * 294.76371 * 7 5 4 38 38 H 1.08998 * 109.46672 * 54.76758 * 7 5 4 39 39 H 1.08999 * 109.46870 * 299.99623 * 13 12 10 40 40 H 1.08999 * 109.46822 * 60.00011 * 13 12 10 41 41 H 1.08997 * 109.47384 * 210.00496 * 17 16 14 42 42 H 1.09009 * 109.47128 * 329.99997 * 17 16 14 43 43 H 0.96997 * 120.00694 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47167 * 209.99991 * 26 16 14 45 45 H 1.09001 * 109.47040 * 330.00651 * 26 16 14 46 46 H 1.09003 * 109.46986 * 299.99742 * 27 26 16 47 47 H 1.08994 * 109.47285 * 60.00309 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2182 5 6 3.4810 -1.2122 -0.7269 6 1 3.7008 -2.2340 -1.0362 7 6 4.5467 -0.2502 -1.2560 8 6 3.3875 -1.1219 0.8086 9 1 4.0878 -0.3733 1.1793 10 6 3.6996 -2.4630 1.4208 11 8 2.8433 -3.0665 2.0228 12 8 4.9292 -2.9874 1.2973 13 6 5.1584 -4.2824 1.9126 14 6 6.5842 -4.7072 1.6725 15 8 7.3332 -3.9895 1.0442 16 7 7.0267 -5.8852 2.1551 17 6 8.4126 -6.2985 1.9212 18 6 9.2825 -5.7985 3.0456 19 1 8.8466 -5.2300 3.8538 20 6 10.6348 -6.0676 3.0430 21 7 11.1656 -6.7602 2.0592 22 14 11.7129 -5.4483 4.4372 23 1 11.7642 -6.4693 5.5143 24 1 13.0849 -5.1970 3.9277 25 1 11.1467 -4.1864 4.9778 26 6 6.1219 -6.7525 2.9136 27 6 5.4061 -7.7059 1.9546 28 6 4.4965 -8.5769 2.7166 29 7 3.7949 -9.2502 3.3039 30 8 2.0416 -0.7348 1.1326 31 1 -0.3633 -1.0264 0.0516 32 1 -0.3634 0.5579 0.8631 33 1 -0.3634 0.4685 -0.9147 34 1 2.1482 -0.1452 -2.0959 35 1 1.4565 -1.6601 -1.4266 36 1 5.5146 -0.5082 -0.8263 37 1 4.5990 -0.3274 -2.3419 38 1 4.2856 0.7705 -0.9764 39 1 4.9763 -4.2124 2.9850 40 1 4.4816 -5.0169 1.4762 41 1 8.4649 -7.3864 1.8775 42 1 8.7623 -5.8798 0.9775 43 1 12.1168 -6.9499 2.0575 44 1 6.6949 -7.3295 3.6392 45 1 5.3853 -6.1414 3.4353 46 1 4.8330 -7.1288 1.2289 47 1 6.1426 -8.3170 1.4328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800297061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:02 Heat of formation + Delta-G solvation = -160.698672 kcal Electronic energy + Delta-G solvation = -29520.124795 eV Core-core repulsion = 25281.672503 eV Total energy + Delta-G solvation = -4238.452292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09246 -40.92625 -40.14609 -38.07627 -37.53758 -36.71973 -34.89216 -34.65879 -33.18593 -32.24226 -30.92166 -28.94445 -27.78310 -27.62191 -25.38519 -24.61211 -22.84758 -22.24330 -21.65980 -20.33868 -19.13154 -18.85264 -18.41688 -18.13795 -17.86535 -17.45169 -17.20067 -16.98892 -16.45895 -16.25077 -15.81501 -15.69089 -15.39403 -14.86955 -14.83082 -14.62954 -14.40870 -13.99245 -13.92598 -13.71822 -13.62206 -13.59460 -13.48707 -13.23581 -13.18670 -12.97513 -12.91090 -12.75108 -12.52182 -12.51656 -12.35149 -12.20080 -12.09020 -11.79295 -11.73360 -11.67825 -11.62197 -11.39217 -10.84590 -10.69441 -10.57726 -9.58726 -8.18236 -6.29871 0.94596 1.03459 1.41002 1.43367 1.52202 1.56880 1.76261 1.81353 2.22557 2.44079 2.82861 3.02157 3.14516 3.32785 3.47466 3.53491 3.73661 3.81648 3.90262 3.95537 4.06750 4.07657 4.12086 4.17159 4.39495 4.40677 4.50722 4.59193 4.76464 4.78406 4.85399 4.87243 5.00085 5.01200 5.03034 5.13500 5.15150 5.17705 5.28895 5.32700 5.37608 5.56000 5.75405 5.83236 6.11379 6.49249 6.57085 6.62609 6.78887 7.24079 7.42231 8.88752 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002840 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.537388 B = 9856.842027 C =11540.862089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.095 0.905 4 C -0.140 4.140 5 C -0.113 4.113 6 H 0.081 0.919 7 C -0.142 4.142 8 C 0.092 3.908 9 H 0.124 0.876 10 C 0.461 3.539 11 O -0.517 6.517 12 O -0.338 6.338 13 C 0.052 3.948 14 C 0.509 3.491 15 O -0.564 6.564 16 N -0.589 5.589 17 C 0.260 3.740 18 C -0.542 4.542 19 H 0.054 0.946 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.956 3.044 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.275 1.275 26 C 0.107 3.893 27 C -0.039 4.039 28 C 0.244 3.756 29 N -0.488 5.488 30 O -0.374 6.374 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.043 0.957 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.882 12.111 -7.871 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.113 0.887 4 C -0.178 4.178 5 C -0.132 4.132 6 H 0.099 0.901 7 C -0.199 4.199 8 C 0.033 3.967 9 H 0.141 0.859 10 C 0.304 3.696 11 O -0.405 6.405 12 O -0.254 6.254 13 C -0.025 4.025 14 C 0.296 3.704 15 O -0.442 6.442 16 N -0.321 5.321 17 C 0.140 3.860 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.018 4.018 27 C -0.080 4.080 28 C -0.073 4.073 29 N -0.166 5.166 30 O -0.294 6.294 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.151 0.849 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.711 11.144 -7.006 23.702 hybrid contribution 1.384 0.017 0.653 1.530 sum -18.327 11.161 -6.353 22.379 Atomic orbital electron populations 1.21810 0.91856 1.02756 1.03795 1.23559 0.96259 0.95923 0.83656 0.88710 1.23325 0.93752 1.01403 0.99277 1.22474 0.98224 1.02416 0.90049 0.90059 1.21854 0.97058 0.98679 1.02337 1.22437 0.87666 0.89914 0.96698 0.85853 1.24151 0.79524 0.88602 0.77350 1.90659 1.48179 1.61984 1.39703 1.86543 1.32889 1.35269 1.70712 1.22986 0.94653 0.83930 1.00931 1.20342 0.88811 0.81682 0.79612 1.90710 1.58636 1.53141 1.41735 1.47986 1.12821 1.18032 1.53245 1.18917 0.76089 0.95373 0.95623 1.21735 0.93621 1.34676 1.08087 0.92818 1.25676 0.99231 0.95293 0.98362 1.70003 1.13101 1.40309 1.32924 0.85581 0.77945 0.78793 0.79491 1.19351 1.20971 1.19950 1.21634 0.93273 0.93215 0.93630 1.19850 0.95729 0.95508 0.96942 1.29134 0.92674 0.92813 0.92691 1.81258 1.12546 1.11961 1.10806 1.88967 1.25903 1.73829 1.40722 0.92857 0.91943 0.88253 0.86617 0.90437 0.92741 0.90225 0.90527 0.86756 0.85409 0.93908 0.97188 0.92504 0.88733 0.88043 0.84918 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.66 71.98 0.70 -0.96 16 2 C 0.06 0.86 3.97 31.27 0.12 0.98 16 3 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.14 -1.65 6.14 31.89 0.20 -1.45 16 5 C -0.11 -1.82 3.27 -9.80 -0.03 -1.86 16 6 H 0.08 1.51 7.69 -2.39 -0.02 1.49 16 7 C -0.14 -1.87 8.91 71.98 0.64 -1.23 16 8 C 0.09 1.96 3.62 30.22 0.11 2.07 16 9 H 0.12 2.28 7.69 -2.39 -0.02 2.26 16 10 C 0.46 12.66 7.06 71.23 0.50 13.16 16 11 O -0.52 -16.53 16.28 28.29 0.46 -16.07 16 12 O -0.34 -10.04 9.75 -45.11 -0.44 -10.48 16 13 C 0.05 1.40 4.50 71.24 0.32 1.72 16 14 C 0.51 18.49 7.75 87.66 0.68 19.17 16 15 O -0.56 -26.57 16.08 15.78 0.25 -26.32 16 16 N -0.59 -20.62 2.46 -826.16 -2.03 -22.65 16 17 C 0.26 12.13 5.16 85.63 0.44 12.57 16 18 C -0.54 -28.61 9.39 25.60 0.24 -28.37 16 19 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 20 C 0.01 0.75 5.46 84.66 0.46 1.21 16 21 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 22 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.11 2.57 5.17 86.38 0.45 3.02 16 27 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 28 C 0.24 5.48 15.43 89.44 1.38 6.86 16 29 N -0.49 -14.01 18.54 20.01 0.37 -13.63 16 30 O -0.37 -8.50 10.46 -130.29 -1.36 -9.86 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 0.74 7.86 -2.38 -0.02 0.72 16 35 H 0.08 0.98 8.06 -2.38 -0.02 0.97 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 2.76 7.39 -2.39 -0.02 2.74 16 40 H 0.13 2.62 7.18 -2.39 -0.02 2.60 16 41 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 42 H 0.01 0.54 7.42 -2.38 -0.02 0.53 16 43 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 45 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 46 H 0.13 1.76 7.22 -2.39 -0.02 1.74 16 47 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -77.60 403.58 6.92 -70.68 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.97 Total: 9.04 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 6.38 Total: 26.36 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.37 Total: -88.38 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -1.09 Total: -62.73 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.60 6.92 -70.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800297061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.015 kcal (2) G-P(sol) polarization free energy of solvation -77.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds