Wall clock time and date at job start Tue Mar 31 2020 21:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 O 1.42904 * 109.46580 * 120.00145 * 2 1 3 5 5 C 1.42894 * 114.00153 * 90.00304 * 4 2 1 6 6 C 1.52995 * 109.47181 * 179.97438 * 5 4 2 7 7 O 1.42903 * 109.47425 * 64.99366 * 6 5 4 8 8 N 1.41603 * 113.99924 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99817 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99654 * 359.97438 * 9 8 7 11 11 N 1.34769 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46508 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93247 * 90.00118 * 13 12 11 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08996 * 109.47010 * 300.00165 * 1 2 3 29 29 H 1.09002 * 109.46394 * 59.99753 * 1 2 3 30 30 H 1.08994 * 109.47231 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47010 * 239.99835 * 2 1 3 32 32 H 1.08993 * 109.47098 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46755 * 299.99953 * 3 2 1 34 34 H 1.09003 * 109.46946 * 59.99675 * 3 2 1 35 35 H 1.08994 * 109.47722 * 59.99333 * 5 4 2 36 36 H 1.09006 * 109.47191 * 299.99277 * 5 4 2 37 37 H 1.09001 * 109.47240 * 304.99492 * 6 5 4 38 38 H 1.09006 * 109.47416 * 184.99952 * 6 5 4 39 39 H 0.96996 * 120.00091 * 359.97438 * 8 7 6 40 40 H 0.97001 * 120.00514 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.46632 * 59.99915 * 12 11 9 42 42 H 1.08996 * 109.47144 * 299.99646 * 12 11 9 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7089 -2.6925 2.2942 7 8 1.7014 -2.5744 3.3008 8 7 2.0744 -3.1150 4.5552 9 6 1.2141 -3.0688 5.5916 10 8 0.1178 -2.5625 5.4495 11 7 1.5693 -3.5829 6.7857 12 6 0.6343 -3.5321 7.9125 13 6 1.2694 -4.1695 9.1213 14 6 2.0090 -3.3985 9.9995 15 6 2.5919 -3.9794 11.1085 16 6 2.4351 -5.3396 11.3412 17 8 3.0064 -5.9135 12.4307 18 6 3.6154 -5.0902 13.3077 19 1 3.7046 -4.0368 13.0871 20 6 4.1274 -5.5961 14.4929 21 7 4.0184 -6.8792 14.7619 22 14 4.9706 -4.4553 15.7082 23 1 3.9665 -3.9175 16.6610 24 1 6.0087 -5.2090 16.4562 25 1 5.6070 -3.3324 14.9737 26 6 1.6971 -6.1124 10.4542 27 6 1.1120 -5.5244 9.3500 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.9319 -2.2468 0.1987 36 1 1.2537 -2.5434 0.7125 37 1 3.6080 -2.1673 2.6168 38 1 2.9411 -3.7454 2.1342 39 1 2.9489 -3.5193 4.6685 40 1 2.4440 -3.9865 6.8992 41 1 -0.2763 -4.0724 7.6535 42 1 0.3897 -2.4936 8.1352 43 1 2.1302 -2.3407 9.8183 44 1 3.1689 -3.3767 11.7941 45 1 4.3769 -7.2331 15.5908 46 1 1.5771 -7.1712 10.6300 47 1 0.5342 -6.1239 8.6622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812883196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:15 Heat of formation + Delta-G solvation = -73.606547 kcal Electronic energy + Delta-G solvation = -27488.236860 eV Core-core repulsion = 23253.561166 eV Total energy + Delta-G solvation = -4234.675694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.86666 -39.13220 -38.91556 -37.45755 -36.75571 -34.33748 -33.58826 -32.47451 -32.10111 -30.28915 -29.93857 -28.92683 -27.60471 -25.83792 -24.60503 -23.20649 -22.05820 -21.75327 -21.22711 -20.63598 -18.73409 -18.29182 -18.06063 -17.49947 -17.00540 -15.95429 -15.78660 -15.54642 -15.20493 -15.05730 -14.73658 -14.56800 -14.45917 -14.00760 -13.84619 -13.65213 -13.54829 -13.42102 -13.14411 -12.79820 -12.76719 -12.66703 -12.47996 -12.13685 -11.90287 -11.81814 -11.70942 -11.40489 -11.38110 -11.04084 -10.96691 -10.79134 -10.69929 -10.49299 -10.18931 -10.01510 -9.43822 -9.17657 -8.92214 -8.76579 -8.28977 -7.34339 -6.54006 -4.12808 1.43832 2.12657 2.18781 3.07915 3.09395 3.13782 3.15179 3.26059 3.84913 3.89825 4.27562 4.36454 4.53052 4.57794 4.62052 4.66025 4.75436 4.83283 4.91247 5.00465 5.15226 5.18083 5.21336 5.23392 5.37862 5.42513 5.43758 5.44974 5.66881 5.77743 5.82281 5.85954 5.90857 6.11754 6.35063 6.52400 6.57788 6.59948 6.77313 6.80078 6.84723 6.96824 7.14701 7.27299 7.34562 7.70796 7.90730 7.95731 8.64812 8.91407 9.59379 10.63464 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.001507 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.900343 B =18571.733080 C =19006.481827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.375 6.375 5 C 0.071 3.929 6 C 0.033 3.967 7 O -0.120 6.120 8 N -0.620 5.620 9 C 0.718 3.282 10 O -0.577 6.577 11 N -0.729 5.729 12 C 0.201 3.799 13 C -0.215 4.215 14 C -0.049 4.049 15 C -0.238 4.238 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.196 4.196 27 C -0.053 4.053 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.402 0.598 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.271 0.729 46 H 0.118 0.882 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 9.145 -26.992 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.294 6.294 5 C -0.007 4.007 6 C -0.045 4.045 7 O -0.123 6.123 8 N -0.325 5.325 9 C 0.419 3.581 10 O -0.452 6.452 11 N -0.389 5.389 12 C 0.079 3.921 13 C -0.217 4.217 14 C -0.067 4.067 15 C -0.257 4.257 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.215 4.215 27 C -0.071 4.071 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.241 0.759 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.585 9.418 -26.720 28.375 hybrid contribution 1.519 -0.029 0.304 1.549 sum -0.066 9.389 -26.416 28.035 Atomic orbital electron populations 1.22304 0.95743 1.02588 1.02766 1.22101 0.93958 0.93843 0.87706 1.21868 1.01685 0.94476 1.02739 1.88041 1.86590 1.19053 1.35743 1.22438 1.00867 0.82785 0.94611 1.23046 0.93071 1.00410 0.87987 1.90657 1.34021 1.78932 1.08671 1.46220 1.18570 1.65672 1.02049 1.15458 0.83622 0.79801 0.79259 1.90938 1.21254 1.50323 1.82727 1.45373 1.20601 1.64288 1.08603 1.19881 0.90376 1.00403 0.81461 1.19206 1.08904 0.94432 0.99147 1.20666 0.94567 0.98322 0.93192 1.21164 1.08047 0.95400 1.01094 1.19452 0.90346 0.91306 0.88284 1.83976 1.60620 1.35504 1.27485 1.21364 1.35708 0.91794 0.98112 0.88884 1.25319 0.97323 0.96755 0.97035 1.70033 1.42505 1.12023 1.24758 0.85693 0.78845 0.79089 0.79712 1.19769 1.20200 1.19139 1.20214 1.04392 0.99857 0.97071 1.20552 0.97207 0.93628 0.95753 0.91407 0.91714 0.92400 0.92328 0.92044 0.91208 0.91548 0.90897 0.91958 0.91108 0.90548 0.75880 0.76820 0.91446 0.91470 0.87278 0.85414 0.91872 0.86374 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 37.16 0.35 -0.90 16 2 C 0.08 0.58 3.34 -26.73 -0.09 0.49 16 3 C -0.15 -0.93 9.56 37.16 0.36 -0.57 16 4 O -0.37 -3.63 9.95 -40.09 -0.40 -4.03 16 5 C 0.07 0.50 6.13 37.16 0.23 0.73 16 6 C 0.03 0.25 6.61 37.16 0.25 0.49 16 7 O -0.12 -1.51 11.07 -34.81 -0.39 -1.90 16 8 N -0.62 -7.14 6.39 27.63 0.18 -6.96 16 9 C 0.72 10.59 8.71 -86.92 -0.76 9.84 16 10 O -0.58 -11.24 16.75 -12.86 -0.22 -11.46 16 11 N -0.73 -9.20 5.55 -66.42 -0.37 -9.57 16 12 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 13 C -0.22 -3.38 5.25 -104.58 -0.55 -3.93 16 14 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 15 C -0.24 -4.84 9.17 -39.39 -0.36 -5.21 16 16 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 17 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 18 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 22 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.20 -3.87 9.99 -39.39 -0.39 -4.27 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.40 3.01 8.56 -40.82 -0.35 2.66 16 40 H 0.40 4.14 8.48 -40.82 -0.35 3.80 16 41 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -34.95 404.26 -8.30 -43.25 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.11 Total: 7.10 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.83 Total: -8.91 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.57 Total: -40.27 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.00 Total: -22.14 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.95 -8.30 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812883196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.356 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds