Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52365 * 2 1 4 4 C 1.53116 * 109.52634 * 239.80583 * 2 1 3 5 5 C 1.53035 * 109.28121 * 182.44226 * 4 2 1 6 6 N 1.46849 * 109.52419 * 59.17971 * 5 4 2 7 7 C 1.46891 * 110.99800 * 174.16233 * 6 5 4 8 8 C 1.53002 * 109.47253 * 48.39185 * 7 6 5 9 9 O 1.42892 * 109.47222 * 66.29507 * 8 7 6 10 10 C 1.42903 * 113.99907 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47146 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00063 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00027 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99928 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00031 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46854 * 90.00680 * 15 13 11 17 17 H 1.48498 * 109.47252 * 210.00626 * 15 13 11 18 18 H 1.48495 * 109.47496 * 330.00942 * 15 13 11 19 19 C 1.46851 * 111.19676 * 298.25788 * 6 5 4 20 20 C 1.53043 * 109.52090 * 61.74138 * 19 6 5 21 21 H 1.08997 * 109.49916 * 180.87654 * 20 19 6 22 22 N 1.46500 * 109.50136 * 60.76256 * 20 19 6 23 23 C 1.34774 * 120.00218 * 85.19445 * 22 20 19 24 24 O 1.21282 * 120.00248 * 0.02562 * 23 22 20 25 25 C 1.50702 * 120.00348 * 179.97438 * 23 22 20 26 26 F 1.39890 * 109.47533 * 179.97438 * 25 23 22 27 27 F 1.39902 * 109.47154 * 300.00678 * 25 23 22 28 28 F 1.39903 * 109.46323 * 60.00121 * 25 23 22 29 29 H 1.09003 * 109.47383 * 299.87757 * 1 2 3 30 30 H 1.08994 * 109.46953 * 59.87570 * 1 2 3 31 31 H 1.08997 * 109.47177 * 179.87576 * 1 2 3 32 32 H 1.08997 * 109.50035 * 302.38804 * 4 2 1 33 33 H 1.09007 * 109.49956 * 62.49794 * 4 2 1 34 34 H 1.09000 * 109.45887 * 299.16114 * 5 4 2 35 35 H 1.08996 * 109.45523 * 179.19390 * 5 4 2 36 36 H 1.09009 * 109.47238 * 168.39022 * 7 6 5 37 37 H 1.08997 * 109.47328 * 288.38516 * 7 6 5 38 38 H 1.09004 * 109.46842 * 186.29552 * 8 7 6 39 39 H 1.08997 * 109.46696 * 306.28944 * 8 7 6 40 40 H 1.08992 * 109.47295 * 299.99968 * 10 9 8 41 41 H 1.08997 * 109.46926 * 59.99874 * 10 9 8 42 42 H 0.97001 * 119.99870 * 179.97438 * 14 13 11 43 43 H 1.08999 * 109.46073 * 301.72934 * 19 6 5 44 44 H 1.08998 * 109.45290 * 181.74883 * 19 6 5 45 45 H 0.97004 * 119.99845 * 265.19329 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7258 -1.2473 5 6 3.5709 -0.7759 -1.2111 6 7 4.0103 -1.4789 0.0010 7 6 5.4670 -1.6677 0.0011 8 6 6.1529 -0.3437 -0.3416 9 8 5.9202 0.5987 0.7069 10 6 6.5220 1.8757 0.4848 11 6 6.2134 2.7853 1.6460 12 1 5.6176 2.4243 2.4713 13 6 6.6924 4.0781 1.6553 14 7 7.4183 4.5176 0.6505 15 14 6.3105 5.2054 3.0950 16 1 7.3711 5.0690 4.1254 17 1 6.2578 6.6120 2.6219 18 1 4.9989 4.8313 3.6823 19 6 3.5708 -0.7744 1.2122 20 6 2.0416 -0.7243 1.2483 21 1 1.7161 -0.1877 2.1395 22 7 1.5081 -2.0884 1.2755 23 6 1.3815 -2.7392 2.4489 24 8 1.7088 -2.1954 3.4824 25 6 0.8321 -4.1422 2.4770 26 9 0.7972 -4.6031 3.7973 27 9 -0.4624 -4.1469 1.9465 28 9 1.6522 -4.9794 1.7129 29 1 -0.3634 0.5119 0.8911 30 1 -0.3633 0.5157 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 1.6447 -1.7407 -1.2663 33 1 1.7162 -0.1902 -2.1392 34 1 3.9674 0.2394 -1.2061 35 1 3.9377 -1.3047 -2.0908 36 1 5.7903 -1.9997 0.9878 37 1 5.7361 -2.4192 -0.7411 38 1 7.2250 -0.5078 -0.4515 39 1 5.7472 0.0444 -1.2758 40 1 7.6016 1.7574 0.3924 41 1 6.1243 2.3101 -0.4323 42 1 7.7550 5.4273 0.6569 43 1 3.9674 0.2408 1.2059 44 1 3.9377 -1.3023 2.0925 45 1 1.2459 -2.5232 0.4490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852756551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = -234.161454 kcal Electronic energy + Delta-G solvation = -31511.080492 eV Core-core repulsion = 26727.585875 eV Total energy + Delta-G solvation = -4783.494618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.52076 -48.05589 -47.99985 -40.62120 -38.92683 -37.00824 -35.09489 -33.55773 -32.71566 -30.47947 -29.83495 -27.93986 -27.27477 -26.06655 -23.43856 -23.01859 -22.32424 -21.81863 -21.01876 -19.50886 -19.28567 -18.96709 -18.60756 -16.53841 -16.30629 -16.12686 -15.73854 -15.71071 -15.23860 -15.00636 -14.78262 -14.75152 -14.42416 -14.41628 -14.29761 -14.13658 -14.12052 -14.07923 -13.81477 -13.63783 -13.39780 -12.69781 -12.59367 -12.36636 -12.25616 -11.92743 -11.86747 -11.59339 -11.25350 -10.94100 -10.89626 -10.88634 -10.66323 -10.61378 -10.44497 -10.27412 -10.17017 -9.37302 -9.18201 -8.91053 -8.29102 -7.95552 -6.18028 -4.20469 1.67959 1.76110 2.88619 3.26004 3.31666 3.36369 3.50915 3.91375 3.93151 4.08446 4.29128 4.49521 4.66454 4.70008 4.81251 5.18845 5.20302 5.31264 5.36931 5.44241 5.50198 5.53166 5.56950 5.60238 5.74342 5.82945 5.88935 5.92464 5.96552 6.03282 6.07733 6.16885 6.25075 6.27832 6.53665 6.87064 7.00381 7.21620 7.27641 7.33110 7.48393 7.71285 8.06251 8.45615 8.92327 9.45191 10.93286 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003165 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.450623 B = 8845.664070 C = 9232.717124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.110 4.110 5 C 0.044 3.956 6 N -0.530 5.530 7 C 0.059 3.941 8 C 0.023 3.977 9 O -0.391 6.391 10 C 0.196 3.804 11 C -0.516 4.516 12 H 0.066 0.934 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.034 3.966 20 C 0.153 3.847 21 H 0.099 0.901 22 N -0.674 5.674 23 C 0.482 3.518 24 O -0.481 6.481 25 C 0.448 3.552 26 F -0.156 7.156 27 F -0.172 7.172 28 F -0.166 7.166 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.264 0.736 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -15.867 -4.638 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.114 0.886 4 C -0.148 4.148 5 C -0.084 4.084 6 N -0.254 5.254 7 C -0.069 4.069 8 C -0.056 4.056 9 O -0.311 6.311 10 C 0.122 3.878 11 C -0.554 4.554 12 H 0.084 0.916 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.733 3.267 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.094 4.094 20 C 0.049 3.951 21 H 0.117 0.883 22 N -0.325 5.325 23 C 0.259 3.741 24 O -0.353 6.353 25 C 0.390 3.610 26 F -0.137 7.137 27 F -0.154 7.154 28 F -0.148 7.148 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.574 -15.813 -3.788 21.836 hybrid contribution 0.390 1.008 -0.032 1.081 sum -14.184 -14.805 -3.820 20.856 Atomic orbital electron populations 1.21826 0.94593 1.01736 1.02237 1.21528 0.96027 1.00766 0.93936 0.88611 1.21646 0.95479 1.00253 0.97381 1.22179 0.94812 0.98293 0.93081 1.62208 1.12093 1.49010 1.02062 1.22238 0.86506 0.95307 1.02823 1.23055 0.98866 0.91440 0.92282 1.87855 1.76014 1.24416 1.42817 1.20184 0.92242 0.78472 0.96934 1.21026 1.33362 0.95906 1.05082 0.91578 1.24937 0.94925 0.97844 0.96632 1.69960 1.35273 1.17543 1.30917 0.86365 0.79033 0.79401 0.81902 1.20414 1.21067 1.19547 1.22724 0.92485 1.01441 0.92759 1.21422 0.94033 0.79984 0.99619 0.88261 1.45876 1.62176 1.16771 1.07715 1.20147 0.81708 0.86045 0.86246 1.90897 1.47403 1.65000 1.32044 1.20437 0.76590 0.89050 0.74897 1.93255 1.96073 1.89662 1.34754 1.93245 1.38958 1.96898 1.86251 1.93273 1.72088 1.73916 1.75517 0.92342 0.92181 0.92847 0.91826 0.91002 0.93136 0.91021 0.90304 0.90008 0.94300 0.94010 0.97871 0.97976 0.92614 0.88903 0.90534 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.02 37.16 0.34 -0.88 16 2 C -0.10 -1.05 2.58 -90.50 -0.23 -1.29 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.11 -1.02 5.19 -26.65 -0.14 -1.16 16 5 C 0.04 0.52 4.49 -3.83 -0.02 0.50 16 6 N -0.53 -6.91 4.71 -234.67 -1.11 -8.01 16 7 C 0.06 0.82 6.01 -3.83 -0.02 0.80 16 8 C 0.02 0.38 5.52 37.16 0.21 0.59 16 9 O -0.39 -8.61 7.55 -35.23 -0.27 -8.87 16 10 C 0.20 5.12 5.69 36.01 0.20 5.33 16 11 C -0.52 -14.61 9.43 -34.44 -0.32 -14.94 16 12 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 15 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.03 0.51 4.59 -3.83 -0.02 0.49 16 20 C 0.15 1.83 2.28 -67.85 -0.15 1.68 16 21 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 22 N -0.67 -7.02 4.13 -53.72 -0.22 -7.24 16 23 C 0.48 5.87 7.32 -10.99 -0.08 5.79 16 24 O -0.48 -7.59 16.28 5.56 0.09 -7.50 16 25 C 0.45 4.78 3.43 36.01 0.12 4.91 16 26 F -0.16 -1.88 16.92 2.25 0.04 -1.85 16 27 F -0.17 -1.63 17.30 2.25 0.04 -1.59 16 28 F -0.17 -1.73 17.30 2.25 0.04 -1.69 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 7.30 -51.93 -0.38 0.02 16 32 H 0.06 0.51 6.68 -51.93 -0.35 0.17 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.05 0.73 6.45 -51.93 -0.33 0.40 16 35 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.08 1.16 7.87 -51.92 -0.41 0.75 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 40 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.09 1.70 5.80 -51.93 -0.30 1.40 16 44 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 45 H 0.41 3.42 6.67 -40.82 -0.27 3.15 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -30.54 371.09 -6.81 -37.35 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.51 Total: -0.43 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.22 Total: 3.36 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.59 Total: -40.83 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.18 Total: -16.37 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.12 Total: -5.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.54 -6.81 -37.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852756551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.810 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds