Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52365 * 2 1 4 4 C 1.53116 * 109.52634 * 239.80583 * 2 1 3 5 5 C 1.53035 * 109.28121 * 182.44226 * 4 2 1 6 6 N 1.46849 * 109.52419 * 59.17971 * 5 4 2 7 7 C 1.46891 * 110.99800 * 174.16233 * 6 5 4 8 8 C 1.53002 * 109.47253 * 48.39185 * 7 6 5 9 9 O 1.42892 * 109.47222 * 66.29507 * 8 7 6 10 10 C 1.42903 * 113.99907 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47146 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00063 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00027 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99928 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00031 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46854 * 90.00680 * 15 13 11 17 17 H 1.48498 * 109.47252 * 210.00626 * 15 13 11 18 18 H 1.48495 * 109.47496 * 330.00942 * 15 13 11 19 19 C 1.46851 * 111.19676 * 298.25788 * 6 5 4 20 20 C 1.53043 * 109.52090 * 61.74138 * 19 6 5 21 21 H 1.08997 * 109.49916 * 180.87654 * 20 19 6 22 22 N 1.46500 * 109.50136 * 60.76256 * 20 19 6 23 23 C 1.34774 * 120.00218 * 85.19445 * 22 20 19 24 24 O 1.21282 * 120.00248 * 0.02562 * 23 22 20 25 25 C 1.50702 * 120.00348 * 179.97438 * 23 22 20 26 26 F 1.39890 * 109.47533 * 179.97438 * 25 23 22 27 27 F 1.39902 * 109.47154 * 300.00678 * 25 23 22 28 28 F 1.39903 * 109.46323 * 60.00121 * 25 23 22 29 29 H 1.09003 * 109.47383 * 299.87757 * 1 2 3 30 30 H 1.08994 * 109.46953 * 59.87570 * 1 2 3 31 31 H 1.08997 * 109.47177 * 179.87576 * 1 2 3 32 32 H 1.08997 * 109.50035 * 302.38804 * 4 2 1 33 33 H 1.09007 * 109.49956 * 62.49794 * 4 2 1 34 34 H 1.09000 * 109.45887 * 299.16114 * 5 4 2 35 35 H 1.08996 * 109.45523 * 179.19390 * 5 4 2 36 36 H 1.09009 * 109.47238 * 168.39022 * 7 6 5 37 37 H 1.08997 * 109.47328 * 288.38516 * 7 6 5 38 38 H 1.09004 * 109.46842 * 186.29552 * 8 7 6 39 39 H 1.08997 * 109.46696 * 306.28944 * 8 7 6 40 40 H 1.08992 * 109.47295 * 299.99968 * 10 9 8 41 41 H 1.08997 * 109.46926 * 59.99874 * 10 9 8 42 42 H 0.97001 * 119.99870 * 179.97438 * 14 13 11 43 43 H 1.08999 * 109.46073 * 301.72934 * 19 6 5 44 44 H 1.08998 * 109.45290 * 181.74883 * 19 6 5 45 45 H 0.97004 * 119.99845 * 265.19329 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7258 -1.2473 5 6 3.5709 -0.7759 -1.2111 6 7 4.0103 -1.4789 0.0010 7 6 5.4670 -1.6677 0.0011 8 6 6.1529 -0.3437 -0.3416 9 8 5.9202 0.5987 0.7069 10 6 6.5220 1.8757 0.4848 11 6 6.2134 2.7853 1.6460 12 1 5.6176 2.4243 2.4713 13 6 6.6924 4.0781 1.6553 14 7 7.4183 4.5176 0.6505 15 14 6.3105 5.2054 3.0950 16 1 7.3711 5.0690 4.1254 17 1 6.2578 6.6120 2.6219 18 1 4.9989 4.8313 3.6823 19 6 3.5708 -0.7744 1.2122 20 6 2.0416 -0.7243 1.2483 21 1 1.7161 -0.1877 2.1395 22 7 1.5081 -2.0884 1.2755 23 6 1.3815 -2.7392 2.4489 24 8 1.7088 -2.1954 3.4824 25 6 0.8321 -4.1422 2.4770 26 9 0.7972 -4.6031 3.7973 27 9 -0.4624 -4.1469 1.9465 28 9 1.6522 -4.9794 1.7129 29 1 -0.3634 0.5119 0.8911 30 1 -0.3633 0.5157 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 1.6447 -1.7407 -1.2663 33 1 1.7162 -0.1902 -2.1392 34 1 3.9674 0.2394 -1.2061 35 1 3.9377 -1.3047 -2.0908 36 1 5.7903 -1.9997 0.9878 37 1 5.7361 -2.4192 -0.7411 38 1 7.2250 -0.5078 -0.4515 39 1 5.7472 0.0444 -1.2758 40 1 7.6016 1.7574 0.3924 41 1 6.1243 2.3101 -0.4323 42 1 7.7550 5.4273 0.6569 43 1 3.9674 0.2408 1.2059 44 1 3.9377 -1.3023 2.0925 45 1 1.2459 -2.5232 0.4490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852756551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = -255.100007 kcal Electronic energy + Delta-G solvation = -31511.988456 eV Core-core repulsion = 26727.585875 eV Total energy + Delta-G solvation = -4784.402581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.39191 -48.90696 -48.88141 -41.65644 -40.07491 -38.51160 -36.38888 -34.91050 -34.44502 -31.52628 -31.05102 -29.33243 -28.72801 -27.26865 -24.65644 -24.42926 -23.93338 -22.77136 -22.13203 -20.42488 -20.32965 -19.82844 -19.52700 -18.64566 -17.57256 -17.36566 -17.22622 -16.76364 -16.51237 -16.27203 -16.08937 -15.65956 -15.65205 -15.49479 -15.27948 -15.18593 -15.07224 -14.99870 -14.98766 -14.79885 -14.54595 -14.19519 -13.75324 -13.54690 -13.33071 -13.25477 -13.15140 -12.88214 -12.82857 -12.67902 -12.46223 -12.18610 -12.06577 -11.71878 -11.62481 -11.43719 -11.32670 -11.21372 -10.89038 -10.40434 -10.22653 -9.19845 -8.35756 -6.47826 0.68434 0.80715 1.37162 1.38767 1.50872 1.98820 2.30722 2.58493 2.90192 2.98505 3.04875 3.06244 3.22274 3.58636 3.75945 3.87462 4.12385 4.19270 4.25070 4.41365 4.48499 4.51638 4.54627 4.61251 4.66124 4.79460 4.84194 4.88295 4.92559 5.00660 5.03146 5.12196 5.17884 5.19185 5.21051 5.32160 5.45150 5.51112 5.91252 5.92541 6.05825 6.15533 6.49364 6.58214 6.77889 7.24415 8.76303 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003165 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.450623 B = 8845.664070 C = 9232.717124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.103 4.103 5 C 0.042 3.958 6 N -0.517 5.517 7 C 0.066 3.934 8 C 0.015 3.985 9 O -0.398 6.398 10 C 0.213 3.787 11 C -0.544 4.544 12 H 0.059 0.941 13 C 0.011 3.989 14 N -0.929 5.929 15 Si 0.976 3.024 16 H -0.270 1.270 17 H -0.273 1.273 18 H -0.265 1.265 19 C 0.042 3.958 20 C 0.160 3.840 21 H 0.083 0.917 22 N -0.656 5.656 23 C 0.482 3.518 24 O -0.522 6.522 25 C 0.462 3.538 26 F -0.164 7.164 27 F -0.160 7.160 28 F -0.161 7.161 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.018 0.982 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.039 0.961 39 H 0.049 0.951 40 H -0.021 1.021 41 H -0.016 1.016 42 H 0.271 0.729 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.292 -16.970 -5.543 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.141 4.141 5 C -0.085 4.085 6 N -0.240 5.240 7 C -0.063 4.063 8 C -0.063 4.063 9 O -0.318 6.318 10 C 0.138 3.862 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.188 4.188 14 N -0.569 5.569 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.189 1.189 19 C -0.087 4.087 20 C 0.056 3.944 21 H 0.101 0.899 22 N -0.308 5.308 23 C 0.260 3.740 24 O -0.398 6.398 25 C 0.404 3.596 26 F -0.145 7.145 27 F -0.141 7.141 28 F -0.142 7.142 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.036 0.964 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.058 0.942 39 H 0.067 0.933 40 H -0.003 1.003 41 H 0.002 0.998 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -16.309 -16.952 -4.740 23.996 hybrid contribution 0.962 1.290 0.175 1.618 sum -15.347 -15.662 -4.565 22.398 Atomic orbital electron populations 1.21787 0.92547 1.02839 1.02624 1.21473 0.97608 0.99392 0.93367 0.90786 1.21657 0.93322 1.01698 0.97396 1.22290 0.96807 0.96530 0.92915 1.62301 1.11432 1.48329 1.01949 1.22319 0.86665 0.93895 1.03377 1.23401 0.99561 0.91881 0.91499 1.87869 1.75559 1.23521 1.44819 1.19737 0.90674 0.80225 0.95548 1.21330 1.34025 0.97123 1.05672 0.92290 1.25873 0.94254 0.99210 0.99488 1.70060 1.35780 1.18277 1.32742 0.85281 0.79105 0.77401 0.78272 1.19548 1.19784 1.18930 1.22497 0.94475 0.98804 0.92900 1.21193 0.92125 0.80884 1.00231 0.89917 1.45693 1.61086 1.16022 1.07993 1.20412 0.81101 0.86575 0.85936 1.90887 1.49200 1.66185 1.33479 1.19978 0.76953 0.87938 0.74705 1.93245 1.96138 1.89621 1.35508 1.93275 1.38046 1.96793 1.85992 1.93291 1.72053 1.73572 1.75274 0.93083 0.90758 0.91322 0.89459 0.89101 0.96396 0.88828 0.91358 0.86327 0.94244 0.93288 1.00292 0.99847 0.92056 0.92895 0.92833 0.73897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.02 71.98 0.65 -1.37 16 2 C -0.10 -1.92 2.58 -10.72 -0.03 -1.95 16 3 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.10 -1.64 5.19 30.64 0.16 -1.48 16 5 C 0.04 0.93 4.49 86.32 0.39 1.32 16 6 N -0.52 -13.06 4.71 -896.35 -4.22 -17.28 16 7 C 0.07 1.77 6.01 86.31 0.52 2.29 16 8 C 0.01 0.52 5.52 71.98 0.40 0.92 16 9 O -0.40 -18.42 7.55 -148.98 -1.13 -19.54 16 10 C 0.21 11.73 5.69 71.24 0.41 12.14 16 11 C -0.54 -31.97 9.43 25.60 0.24 -31.73 16 12 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -55.42 13.29 21.45 0.28 -55.13 16 15 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.04 1.30 4.59 86.33 0.40 1.70 16 20 C 0.16 3.85 2.28 45.05 0.10 3.95 16 21 H 0.08 2.30 7.58 -2.39 -0.02 2.28 16 22 N -0.66 -12.72 4.13 -442.28 -1.83 -14.55 16 23 C 0.48 11.34 7.32 87.66 0.64 11.99 16 24 O -0.52 -16.73 16.28 -3.04 -0.05 -16.78 16 25 C 0.46 9.06 3.43 71.24 0.24 9.31 16 26 F -0.16 -3.78 16.92 44.97 0.76 -3.02 16 27 F -0.16 -2.62 17.30 44.97 0.78 -1.84 16 28 F -0.16 -2.95 17.30 44.97 0.78 -2.18 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.78 7.30 -2.39 -0.02 0.77 16 32 H 0.09 1.02 6.68 -2.39 -0.02 1.01 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.02 0.52 6.45 -2.39 -0.02 0.51 16 35 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 36 H 0.07 2.01 7.87 -2.38 -0.02 1.99 16 37 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.05 1.65 6.05 -2.39 -0.01 1.63 16 40 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.05 2.08 5.80 -2.39 -0.01 2.07 16 44 H 0.05 1.86 7.96 -2.39 -0.02 1.84 16 45 H 0.42 5.78 6.67 -92.71 -0.62 5.16 16 Total: -1.00 -68.74 371.09 2.38 -66.35 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.40 Total: 9.47 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.58 Total: 8.14 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -5.77 Total: -86.96 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.17 Total: -36.33 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 2.32 Total: -7.03 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.74 2.38 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852756551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.748 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds