Wall clock time and date at job start Tue Mar 31 2020 21:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99852 * 2 1 4 4 C 1.53002 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47117 * 60.00119 * 4 3 2 6 6 N 1.46492 * 109.47432 * 180.02562 * 4 3 2 7 7 C 1.34782 * 119.99646 * 296.92691 * 6 4 3 8 8 O 1.21584 * 120.00306 * 5.21635 * 7 6 4 9 9 N 1.34777 * 119.99720 * 185.20834 * 7 6 4 10 10 C 1.46920 * 120.63466 * 354.84763 * 9 7 6 11 11 C 1.53194 * 108.77918 * 233.58742 * 10 9 7 12 12 C 1.53047 * 109.30842 * 305.36237 * 11 10 9 13 13 C 1.53040 * 109.53837 * 61.36662 * 12 11 10 14 14 H 1.09000 * 109.49971 * 58.58481 * 13 12 11 15 15 C 1.50696 * 109.49716 * 178.68069 * 13 12 11 16 16 H 1.07997 * 120.00011 * 34.44694 * 15 13 12 17 17 C 1.37875 * 119.99968 * 214.44144 * 15 13 12 18 18 N 1.31513 * 120.00023 * 183.99231 * 17 15 13 19 19 Si 1.86800 * 120.00006 * 3.99189 * 17 15 13 20 20 H 1.48498 * 109.47359 * 93.78859 * 19 17 15 21 21 H 1.48505 * 109.47195 * 213.79023 * 19 17 15 22 22 H 1.48501 * 109.47152 * 333.78716 * 19 17 15 23 23 C 1.46927 * 120.62623 * 174.56929 * 9 7 6 24 24 C 1.53008 * 109.47035 * 300.00424 * 4 3 2 25 25 F 1.39895 * 109.47252 * 58.05690 * 24 4 3 26 26 F 1.39899 * 109.46924 * 178.05630 * 24 4 3 27 27 F 1.39895 * 109.46846 * 298.05771 * 24 4 3 28 28 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47064 * 299.99760 * 1 2 3 30 30 H 1.09000 * 109.47163 * 59.99243 * 1 2 3 31 31 H 1.08999 * 109.47757 * 299.99697 * 3 2 1 32 32 H 1.08995 * 109.47166 * 60.00673 * 3 2 1 33 33 H 1.08995 * 109.46947 * 59.99855 * 5 4 3 34 34 H 1.08999 * 109.47248 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.47037 * 300.00522 * 5 4 3 36 36 H 0.96994 * 120.00520 * 116.93253 * 6 4 3 37 37 H 1.09000 * 109.58492 * 353.37560 * 10 9 7 38 38 H 1.09004 * 109.58774 * 113.65204 * 10 9 7 39 39 H 1.08993 * 109.49974 * 65.31331 * 11 10 9 40 40 H 1.08995 * 109.49861 * 185.41438 * 11 10 9 41 41 H 1.08998 * 109.45850 * 181.38678 * 12 11 10 42 42 H 1.09004 * 109.46241 * 301.35833 * 12 11 10 43 43 H 0.97005 * 120.00151 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58477 * 246.20337 * 23 9 7 45 45 H 1.08997 * 109.58980 * 6.62574 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 7 4.1314 2.5229 0.0013 7 6 3.9230 3.3537 -1.0393 8 8 3.1650 3.0304 -1.9333 9 7 4.5549 4.5432 -1.0889 10 6 5.3850 4.9973 0.0350 11 6 4.9134 6.3899 0.4653 12 6 4.9285 7.3258 -0.7456 13 6 3.9662 6.7982 -1.8123 14 1 2.9620 6.7289 -1.3941 15 6 3.9574 7.7375 -2.9906 16 1 4.8622 8.2528 -3.2772 17 6 2.7942 7.9390 -3.7029 18 7 2.8042 8.6969 -4.7776 19 14 1.2041 7.1355 -3.1414 20 1 0.4504 8.0796 -2.2778 21 1 0.3814 6.7845 -4.3269 22 1 1.5164 5.9035 -2.3733 23 6 4.4316 5.4076 -2.2705 24 6 3.9864 0.4255 1.2502 25 9 3.3824 -0.8362 1.2727 26 9 5.3773 0.2763 1.2286 27 9 3.6118 1.1422 2.3917 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 3.6662 0.9659 -2.1384 34 1 5.0740 0.3387 -1.2476 35 1 3.5440 -0.5706 -1.2484 36 1 4.6759 2.8110 0.7504 37 1 5.2824 4.3030 0.8690 38 1 6.4286 5.0426 -0.2764 39 1 3.9004 6.3245 0.8620 40 1 5.5812 6.7788 1.2339 41 1 4.6169 8.3237 -0.4371 42 1 5.9369 7.3713 -1.1570 43 1 1.9858 8.8390 -5.2786 44 1 5.3987 5.4881 -2.7669 45 1 3.6997 4.9841 -2.9583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932319083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:32 Heat of formation + Delta-G solvation = -219.730611 kcal Electronic energy + Delta-G solvation = -32293.287256 eV Core-core repulsion = 27510.418406 eV Total energy + Delta-G solvation = -4782.868849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.33623 -47.85541 -47.73445 -40.54048 -38.46338 -37.24488 -35.57551 -33.61315 -32.17079 -31.09876 -30.28380 -27.68111 -26.70527 -25.53998 -25.29162 -24.72738 -21.96352 -21.66176 -19.92089 -19.37632 -18.79944 -18.63138 -18.33797 -17.18673 -16.76709 -16.56041 -16.17641 -15.73218 -15.42876 -14.81409 -14.63286 -14.56171 -14.35409 -14.22118 -14.00855 -13.93890 -13.89573 -13.84783 -13.76050 -13.31615 -13.05297 -12.95627 -12.77065 -12.58389 -12.38197 -12.13591 -11.78959 -11.67227 -11.36025 -11.30055 -11.13172 -10.79331 -10.60924 -10.15799 -9.97762 -9.70451 -9.68872 -9.41026 -9.39415 -9.14724 -8.61952 -8.09605 -6.14477 -4.15719 2.21806 2.55139 3.16772 3.27925 3.38189 3.38854 3.46472 3.57608 3.81756 3.88234 4.16874 4.39787 4.52693 4.69335 4.99232 5.11951 5.16421 5.21925 5.26531 5.27684 5.42773 5.49712 5.50879 5.56948 5.62752 5.75890 5.91827 6.09088 6.11721 6.13808 6.20476 6.33360 6.53188 6.58597 6.67534 6.83034 6.85003 7.05826 7.24607 7.33670 7.69968 8.03776 8.44405 8.69797 8.90875 9.48787 10.97860 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003925 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.254048 B = 7131.259397 C = 8182.627650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.044 3.956 4 C 0.166 3.834 5 C -0.166 4.166 6 N -0.744 5.744 7 C 0.711 3.289 8 O -0.580 6.580 9 N -0.618 5.618 10 C 0.114 3.886 11 C -0.137 4.137 12 C -0.104 4.104 13 C 0.004 3.996 14 H 0.037 0.963 15 C -0.515 4.515 16 H 0.075 0.925 17 C 0.076 3.924 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.255 1.255 23 C 0.130 3.870 24 C 0.454 3.546 25 F -0.157 7.157 26 F -0.179 7.179 27 F -0.182 7.182 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.401 0.599 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.265 0.735 44 H 0.061 0.939 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -16.623 14.226 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.034 4.034 4 C 0.076 3.924 5 C -0.223 4.223 6 N -0.406 5.406 7 C 0.413 3.587 8 O -0.458 6.458 9 N -0.354 5.354 10 C -0.010 4.010 11 C -0.175 4.175 12 C -0.142 4.142 13 C -0.016 4.016 14 H 0.055 0.945 15 C -0.553 4.553 16 H 0.093 0.907 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.697 3.303 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.179 1.179 23 C 0.009 3.991 24 C 0.399 3.601 25 F -0.138 7.138 26 F -0.161 7.161 27 F -0.163 7.163 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.384 -16.948 13.404 21.653 hybrid contribution -0.726 -0.017 0.959 1.203 sum 0.658 -16.966 14.363 22.239 Atomic orbital electron populations 1.22747 0.80287 1.02822 1.00348 1.87847 1.20265 1.26369 1.95633 1.23011 0.90245 0.86152 1.04000 1.20976 0.94297 0.83740 0.93392 1.22283 1.02010 1.01073 0.96983 1.45146 1.57519 1.13825 1.24159 1.15742 0.80909 0.80439 0.81620 1.90862 1.39919 1.75671 1.39386 1.47804 1.49974 1.17406 1.20220 1.21599 0.95025 0.96194 0.88170 1.22006 1.01194 0.95044 0.99278 1.21572 1.00467 0.97848 0.94305 1.19616 0.95283 0.91657 0.95073 0.94451 1.20895 0.97853 1.24878 1.11638 0.90664 1.25070 0.98922 0.94382 0.94286 1.69903 1.28277 1.38342 1.16658 0.86922 0.83773 0.80839 0.78725 1.20550 1.21397 1.17912 1.22518 1.01517 0.90332 0.84740 1.20443 0.75164 0.79258 0.85203 1.93246 1.82980 1.41039 1.96553 1.93194 1.30350 1.95837 1.96679 1.93184 1.91188 1.77977 1.53961 0.89336 0.94079 0.93606 0.88224 0.92357 0.87751 0.91372 0.89839 0.76107 0.91985 0.91269 0.92127 0.91645 0.92152 0.92692 0.92531 0.92044 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.72 8.17 -35.23 -0.29 -5.01 16 3 C 0.04 0.58 4.67 37.16 0.17 0.75 16 4 C 0.17 2.09 0.45 -131.82 -0.06 2.03 16 5 C -0.17 -2.07 7.97 37.16 0.30 -1.77 16 6 N -0.74 -9.76 4.88 -52.41 -0.26 -10.01 16 7 C 0.71 11.99 7.70 -86.91 -0.67 11.32 16 8 O -0.58 -11.62 11.99 5.29 0.06 -11.56 16 9 N -0.62 -10.44 2.97 -178.23 -0.53 -10.97 16 10 C 0.11 1.48 6.39 -3.71 -0.02 1.45 16 11 C -0.14 -1.90 6.08 -26.61 -0.16 -2.06 16 12 C -0.10 -1.86 5.15 -26.69 -0.14 -2.00 16 13 C 0.00 0.08 1.87 -91.43 -0.17 -0.09 16 14 H 0.04 0.87 5.16 -51.93 -0.27 0.60 16 15 C -0.51 -13.68 8.87 -34.44 -0.31 -13.98 16 16 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 19 Si 0.87 21.56 27.24 -169.99 -4.63 16.92 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.28 6.46 56.52 0.37 -5.92 16 23 C 0.13 2.66 5.74 -3.48 -0.02 2.64 16 24 C 0.45 5.29 2.18 37.16 0.08 5.37 16 25 F -0.16 -1.91 15.01 2.25 0.03 -1.88 16 26 F -0.18 -2.02 16.67 2.25 0.04 -1.98 16 27 F -0.18 -2.09 16.62 2.25 0.04 -2.05 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.54 6.22 -51.93 -0.32 1.22 16 32 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 33 H 0.10 1.54 6.13 -51.93 -0.32 1.23 16 34 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 35 H 0.08 0.97 7.39 -51.93 -0.38 0.58 16 36 H 0.40 4.41 5.82 -40.82 -0.24 4.17 16 37 H 0.06 0.63 5.64 -51.93 -0.29 0.34 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.95 6.99 -51.93 -0.36 1.59 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -30.62 360.33 -5.71 -36.32 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.40 Total: 3.58 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 0.02 Total: 7.14 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.01 Total: -46.91 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.22 Total: -16.57 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.63 Total: 16.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.62 -5.71 -36.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.407 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds