Wall clock time and date at job start Tue Mar 31 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99852 * 2 1 4 4 C 1.53002 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47117 * 60.00119 * 4 3 2 6 6 N 1.46492 * 109.47432 * 180.02562 * 4 3 2 7 7 C 1.34782 * 119.99646 * 296.92691 * 6 4 3 8 8 O 1.21584 * 120.00306 * 5.21635 * 7 6 4 9 9 N 1.34777 * 119.99720 * 185.20834 * 7 6 4 10 10 C 1.46920 * 120.63466 * 354.84763 * 9 7 6 11 11 C 1.53194 * 108.77918 * 233.58742 * 10 9 7 12 12 C 1.53047 * 109.30842 * 305.36237 * 11 10 9 13 13 C 1.53040 * 109.53837 * 61.36662 * 12 11 10 14 14 H 1.09000 * 109.49971 * 58.58481 * 13 12 11 15 15 C 1.50696 * 109.49716 * 178.68069 * 13 12 11 16 16 H 1.07997 * 120.00011 * 34.44694 * 15 13 12 17 17 C 1.37875 * 119.99968 * 214.44144 * 15 13 12 18 18 N 1.31513 * 120.00023 * 183.99231 * 17 15 13 19 19 Si 1.86800 * 120.00006 * 3.99189 * 17 15 13 20 20 H 1.48498 * 109.47359 * 93.78859 * 19 17 15 21 21 H 1.48505 * 109.47195 * 213.79023 * 19 17 15 22 22 H 1.48501 * 109.47152 * 333.78716 * 19 17 15 23 23 C 1.46927 * 120.62623 * 174.56929 * 9 7 6 24 24 C 1.53008 * 109.47035 * 300.00424 * 4 3 2 25 25 F 1.39895 * 109.47252 * 58.05690 * 24 4 3 26 26 F 1.39899 * 109.46924 * 178.05630 * 24 4 3 27 27 F 1.39895 * 109.46846 * 298.05771 * 24 4 3 28 28 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47064 * 299.99760 * 1 2 3 30 30 H 1.09000 * 109.47163 * 59.99243 * 1 2 3 31 31 H 1.08999 * 109.47757 * 299.99697 * 3 2 1 32 32 H 1.08995 * 109.47166 * 60.00673 * 3 2 1 33 33 H 1.08995 * 109.46947 * 59.99855 * 5 4 3 34 34 H 1.08999 * 109.47248 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.47037 * 300.00522 * 5 4 3 36 36 H 0.96994 * 120.00520 * 116.93253 * 6 4 3 37 37 H 1.09000 * 109.58492 * 353.37560 * 10 9 7 38 38 H 1.09004 * 109.58774 * 113.65204 * 10 9 7 39 39 H 1.08993 * 109.49974 * 65.31331 * 11 10 9 40 40 H 1.08995 * 109.49861 * 185.41438 * 11 10 9 41 41 H 1.08998 * 109.45850 * 181.38678 * 12 11 10 42 42 H 1.09004 * 109.46241 * 301.35833 * 12 11 10 43 43 H 0.97005 * 120.00151 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58477 * 246.20337 * 23 9 7 45 45 H 1.08997 * 109.58980 * 6.62574 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 7 4.1314 2.5229 0.0013 7 6 3.9230 3.3537 -1.0393 8 8 3.1650 3.0304 -1.9333 9 7 4.5549 4.5432 -1.0889 10 6 5.3850 4.9973 0.0350 11 6 4.9134 6.3899 0.4653 12 6 4.9285 7.3258 -0.7456 13 6 3.9662 6.7982 -1.8123 14 1 2.9620 6.7289 -1.3941 15 6 3.9574 7.7375 -2.9906 16 1 4.8622 8.2528 -3.2772 17 6 2.7942 7.9390 -3.7029 18 7 2.8042 8.6969 -4.7776 19 14 1.2041 7.1355 -3.1414 20 1 0.4504 8.0796 -2.2778 21 1 0.3814 6.7845 -4.3269 22 1 1.5164 5.9035 -2.3733 23 6 4.4316 5.4076 -2.2705 24 6 3.9864 0.4255 1.2502 25 9 3.3824 -0.8362 1.2727 26 9 5.3773 0.2763 1.2286 27 9 3.6118 1.1422 2.3917 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 3.6662 0.9659 -2.1384 34 1 5.0740 0.3387 -1.2476 35 1 3.5440 -0.5706 -1.2484 36 1 4.6759 2.8110 0.7504 37 1 5.2824 4.3030 0.8690 38 1 6.4286 5.0426 -0.2764 39 1 3.9004 6.3245 0.8620 40 1 5.5812 6.7788 1.2339 41 1 4.6169 8.3237 -0.4371 42 1 5.9369 7.3713 -1.1570 43 1 1.9858 8.8390 -5.2786 44 1 5.3987 5.4881 -2.7669 45 1 3.6997 4.9841 -2.9583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932319083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:31 Heat of formation + Delta-G solvation = -239.724853 kcal Electronic energy + Delta-G solvation = -32294.154271 eV Core-core repulsion = 27510.418406 eV Total energy + Delta-G solvation = -4783.735865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.25193 -48.75368 -48.65789 -41.80296 -39.57571 -38.48958 -36.75306 -35.34345 -33.84418 -32.36883 -31.76375 -28.59414 -27.67450 -27.06216 -26.47333 -26.09873 -23.39489 -22.82137 -21.29238 -20.62096 -19.97767 -19.54433 -19.46327 -18.90755 -18.16329 -17.51838 -17.24676 -16.84599 -16.62690 -16.24785 -15.94175 -15.57579 -15.46024 -15.35772 -15.26669 -15.12318 -14.92039 -14.84581 -14.81234 -14.77413 -14.35028 -14.27347 -14.02264 -13.93426 -13.74208 -13.22077 -13.03898 -12.80137 -12.72155 -12.66552 -12.55348 -12.32064 -11.98279 -11.76795 -11.60743 -11.31472 -11.02047 -10.97624 -10.72982 -10.70622 -10.59006 -9.49474 -8.32893 -6.35192 1.10167 1.27142 1.34493 1.45221 1.53779 1.93480 2.30774 2.37692 2.53713 2.72395 2.95050 3.06294 3.21131 3.54059 3.71902 3.95032 4.11263 4.15947 4.21522 4.40246 4.45962 4.49019 4.50666 4.55402 4.60905 4.62172 4.69093 4.77347 4.80538 4.97647 5.02452 5.05469 5.08114 5.15707 5.23617 5.43412 5.60035 5.64351 5.68653 5.86364 5.95710 6.31292 6.74073 6.82692 7.31749 7.39635 8.83428 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003925 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.254048 B = 7131.259397 C = 8182.627650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.162 3.838 5 C -0.160 4.160 6 N -0.726 5.726 7 C 0.710 3.290 8 O -0.616 6.616 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.128 4.128 12 C -0.102 4.102 13 C 0.002 3.998 14 H 0.025 0.975 15 C -0.509 4.509 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.943 5.943 19 Si 0.931 3.069 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.256 1.256 23 C 0.144 3.856 24 C 0.465 3.535 25 F -0.158 7.158 26 F -0.173 7.173 27 F -0.177 7.177 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.265 0.735 44 H 0.062 0.938 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -18.356 17.378 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.310 6.310 3 C -0.029 4.029 4 C 0.072 3.928 5 C -0.218 4.218 6 N -0.389 5.389 7 C 0.412 3.588 8 O -0.496 6.496 9 N -0.357 5.357 10 C -0.014 4.014 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.018 4.018 14 H 0.043 0.957 15 C -0.547 4.547 16 H 0.062 0.938 17 C -0.175 4.175 18 N -0.583 5.583 19 Si 0.756 3.244 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.180 1.180 23 C 0.021 3.979 24 C 0.410 3.590 25 F -0.139 7.139 26 F -0.155 7.155 27 F -0.159 7.159 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.255 0.745 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.025 -18.697 16.628 25.103 hybrid contribution -0.861 0.500 -0.018 0.996 sum 1.165 -18.197 16.610 24.665 Atomic orbital electron populations 1.22957 0.78926 1.04347 1.00626 1.87832 1.21772 1.25732 1.95639 1.22845 0.90621 0.86493 1.02957 1.21025 0.94171 0.83415 0.94174 1.22193 1.02650 1.01047 0.95873 1.44858 1.57131 1.13507 1.23399 1.15798 0.80447 0.80644 0.81919 1.90857 1.41379 1.76406 1.40968 1.47645 1.50679 1.17131 1.20266 1.21937 0.95208 0.96417 0.87817 1.21950 1.02190 0.94487 0.97987 1.21465 0.99151 0.98449 0.94891 1.19578 0.96065 0.91660 0.94468 0.95652 1.21228 0.96303 1.24638 1.12575 0.93836 1.25779 1.02057 0.95227 0.94476 1.70027 1.29079 1.40796 1.18372 0.85970 0.80336 0.79967 0.78082 1.19349 1.21896 1.17965 1.21903 1.00420 0.89934 0.85662 1.20105 0.75305 0.78984 0.84625 1.93249 1.83084 1.41088 1.96521 1.93212 1.29842 1.95793 1.96631 1.93197 1.91190 1.77878 1.53622 0.87240 0.93063 0.94078 0.90924 0.91701 0.90283 0.90323 0.89034 0.74545 0.88361 0.89356 0.92524 0.87704 0.92962 0.92371 0.92569 0.91943 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.39 -9.04 8.17 -148.98 -1.22 -10.26 16 3 C 0.05 1.23 4.67 71.98 0.34 1.56 16 4 C 0.16 3.75 0.45 3.61 0.00 3.75 16 5 C -0.16 -3.79 7.97 71.98 0.57 -3.21 16 6 N -0.73 -17.18 4.88 -438.00 -2.14 -19.32 16 7 C 0.71 22.96 7.70 179.05 1.38 24.33 16 8 O -0.62 -24.78 11.99 -3.98 -0.05 -24.82 16 9 N -0.62 -19.85 2.97 -836.06 -2.48 -22.33 16 10 C 0.11 2.36 6.39 86.36 0.55 2.92 16 11 C -0.13 -3.06 6.08 30.67 0.19 -2.88 16 12 C -0.10 -3.47 5.15 30.62 0.16 -3.32 16 13 C 0.00 0.09 1.87 -11.32 -0.02 0.07 16 14 H 0.03 1.17 5.16 -2.39 -0.01 1.16 16 15 C -0.51 -27.84 8.87 25.60 0.23 -27.61 16 16 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 17 C 0.02 1.31 5.47 84.65 0.46 1.77 16 18 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 19 Si 0.93 45.87 27.24 68.60 1.87 47.73 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.26 -12.49 6.46 99.48 0.64 -11.85 16 23 C 0.14 5.89 5.74 86.51 0.50 6.38 16 24 C 0.46 9.46 2.18 71.98 0.16 9.61 16 25 F -0.16 -3.43 15.01 44.97 0.68 -2.75 16 26 F -0.17 -3.31 16.67 44.97 0.75 -2.56 16 27 F -0.18 -3.48 16.62 44.97 0.75 -2.73 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 2.25 6.22 -2.39 -0.01 2.23 16 32 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 33 H 0.08 2.34 6.13 -2.39 -0.01 2.32 16 34 H 0.08 1.66 7.75 -2.39 -0.02 1.64 16 35 H 0.09 1.99 7.39 -2.38 -0.02 1.98 16 36 H 0.41 7.45 5.82 -92.71 -0.54 6.91 16 37 H 0.10 1.47 5.64 -2.39 -0.01 1.46 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.27 15.50 8.31 -92.70 -0.77 14.72 16 44 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.05 2.41 6.99 -2.39 -0.02 2.39 16 Total: -1.00 -69.25 360.33 4.63 -64.62 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.42 Total: 15.34 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.76 Total: 15.12 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -4.32 Total: -99.68 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.27 Total: -35.08 kcal Atomic # 9 Polarization: -10.22 SS G_CDS: 2.17 Total: -8.05 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.87 Total: 47.73 kcal Total: -69.25 4.63 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.109 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds