Wall clock time and date at job start Tue Mar 31 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00341 * 2 1 4 4 C 1.53002 * 109.47760 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.46678 * 300.00246 * 4 3 2 6 6 N 1.46495 * 109.47339 * 180.02562 * 4 3 2 7 7 C 1.34780 * 119.99930 * 57.90109 * 6 4 3 8 8 O 1.21587 * 119.99982 * 5.08756 * 7 6 4 9 9 N 1.34772 * 119.99943 * 185.08741 * 7 6 4 10 10 C 1.46925 * 120.63278 * 354.86538 * 9 7 6 11 11 C 1.53192 * 108.77507 * 233.58888 * 10 9 7 12 12 C 1.53042 * 109.31102 * 305.35732 * 11 10 9 13 13 C 1.53041 * 109.53546 * 61.37118 * 12 11 10 14 14 H 1.08996 * 109.49968 * 58.58498 * 13 12 11 15 15 C 1.50697 * 109.49877 * 178.68204 * 13 12 11 16 16 H 1.08001 * 120.00044 * 359.83798 * 15 13 12 17 17 C 1.37875 * 120.00128 * 179.83242 * 15 13 12 18 18 N 1.31514 * 119.99980 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00258 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47263 * 119.99991 * 19 17 15 22 22 H 1.48496 * 109.47530 * 240.00552 * 19 17 15 23 23 C 1.46931 * 120.63232 * 174.84176 * 9 7 6 24 24 C 1.52998 * 109.46847 * 59.99844 * 4 3 2 25 25 F 1.39901 * 109.46820 * 174.60543 * 24 4 3 26 26 F 1.39899 * 109.47472 * 294.60081 * 24 4 3 27 27 F 1.39903 * 109.47220 * 54.60395 * 24 4 3 28 28 H 1.09001 * 109.47265 * 299.99310 * 1 2 3 29 29 H 1.08998 * 109.47527 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47745 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47222 * 60.00290 * 3 2 1 32 32 H 1.09007 * 109.47335 * 300.00569 * 3 2 1 33 33 H 1.09000 * 109.46791 * 299.99858 * 5 4 3 34 34 H 1.08998 * 109.47168 * 59.99858 * 5 4 3 35 35 H 1.08994 * 109.46733 * 179.97438 * 5 4 3 36 36 H 0.96994 * 119.99989 * 237.89380 * 6 4 3 37 37 H 1.09008 * 109.58527 * 353.36915 * 10 9 7 38 38 H 1.08991 * 109.59355 * 113.65367 * 10 9 7 39 39 H 1.08996 * 109.50303 * 65.31545 * 11 10 9 40 40 H 1.09008 * 109.49845 * 185.41267 * 11 10 9 41 41 H 1.08999 * 109.45874 * 181.38692 * 12 11 10 42 42 H 1.08999 * 109.46551 * 301.35998 * 12 11 10 43 43 H 0.97001 * 119.99741 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58390 * 246.20320 * 23 9 7 45 45 H 1.08994 * 109.58233 * 6.62360 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9874 0.4251 1.2483 6 7 4.1313 2.5229 0.0000 7 6 3.8391 3.3902 0.9894 8 8 3.1558 3.0325 1.9293 9 7 4.3044 4.6540 0.9370 10 6 5.2222 5.0701 -0.1322 11 6 6.4679 5.6957 0.5031 12 6 6.0432 6.8269 1.4423 13 6 5.1636 6.2613 2.5596 14 1 5.7160 5.4969 3.1060 15 6 4.7725 7.3703 3.5020 16 1 5.1188 8.3777 3.3239 17 6 3.9723 7.0990 4.5916 18 7 3.5509 5.8723 4.8088 19 14 3.4881 8.4736 5.7603 20 1 4.0880 9.7509 5.2976 21 1 2.0090 8.6028 5.7866 22 1 3.9820 8.1600 7.1251 23 6 3.9031 5.6421 1.9477 24 6 3.9864 0.4256 -1.2502 25 9 5.3839 0.4217 -1.3144 26 9 3.5188 -0.8916 -1.1899 27 9 3.4688 1.0525 -2.3888 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6660 0.9658 2.1385 34 1 3.5440 -0.5707 1.2483 35 1 5.0739 0.3387 1.2477 36 1 4.7361 2.7849 -0.7116 37 1 5.5111 4.2016 -0.7243 38 1 4.7296 5.8015 -0.7727 39 1 7.0082 4.9366 1.0688 40 1 7.1135 6.0953 -0.2791 41 1 6.9291 7.2900 1.8768 42 1 5.4816 7.5736 0.8809 43 1 2.9883 5.6814 5.5756 44 1 3.3036 6.4221 1.4783 45 1 3.3214 5.1511 2.7278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932319086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:34 Heat of formation + Delta-G solvation = -219.747205 kcal Electronic energy + Delta-G solvation = -32240.547504 eV Core-core repulsion = 27457.677935 eV Total energy + Delta-G solvation = -4782.869569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.22755 -47.74209 -47.63623 -40.28315 -38.29720 -37.04250 -35.35188 -33.56026 -32.07669 -30.81388 -29.66456 -27.55718 -26.54841 -25.44247 -25.11677 -24.53038 -21.92176 -21.50720 -19.86266 -19.22595 -18.64039 -18.51395 -18.10164 -17.01131 -16.45637 -16.16775 -16.00608 -15.62322 -14.97434 -14.76235 -14.56349 -14.49830 -14.37844 -14.10951 -13.84264 -13.81623 -13.80004 -13.72063 -13.59313 -13.03331 -12.93030 -12.82021 -12.59342 -12.38090 -12.01944 -11.92875 -11.63691 -11.56355 -11.20466 -11.03863 -10.94106 -10.53284 -10.43510 -10.27502 -9.93533 -9.83060 -9.42622 -9.17507 -9.14578 -8.98858 -8.46137 -7.78436 -6.01904 -4.10759 2.38769 2.72143 3.28225 3.36605 3.37511 3.39924 3.53923 3.77115 3.97952 4.05666 4.32679 4.41918 4.67232 4.83286 5.16820 5.21866 5.28204 5.30801 5.38678 5.43661 5.55904 5.57346 5.67107 5.72294 5.79966 5.91966 6.10377 6.26497 6.33631 6.38717 6.49576 6.59945 6.72529 6.91198 6.94953 6.95889 7.24325 7.32872 7.67680 7.86690 8.00308 8.36096 8.37081 8.92495 9.01135 9.55059 11.03057 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.003544 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.911839 B = 7898.320795 C = 9007.088372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.045 3.955 4 C 0.167 3.833 5 C -0.166 4.166 6 N -0.747 5.747 7 C 0.708 3.292 8 O -0.570 6.570 9 N -0.616 5.616 10 C 0.113 3.887 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.039 3.961 14 H 0.030 0.970 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.454 3.546 25 F -0.181 7.181 26 F -0.160 7.160 27 F -0.181 7.181 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.041 0.959 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -10.448 -13.961 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.302 6.302 3 C -0.033 4.033 4 C 0.077 3.923 5 C -0.224 4.224 6 N -0.410 5.410 7 C 0.410 3.590 8 O -0.447 6.447 9 N -0.352 5.352 10 C -0.011 4.011 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.020 3.980 14 H 0.048 0.952 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.008 3.992 24 C 0.400 3.600 25 F -0.162 7.162 26 F -0.141 7.141 27 F -0.163 7.163 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.264 -10.961 -13.150 17.166 hybrid contribution -0.003 0.989 -0.113 0.995 sum -1.267 -9.973 -13.263 16.642 Atomic orbital electron populations 1.22734 0.80344 1.02754 1.00317 1.87831 1.20228 1.26512 1.95632 1.22988 0.90263 0.86077 1.03971 1.20925 0.94264 0.83984 0.93079 1.22308 1.01874 1.00962 0.97252 1.45182 1.52989 1.12752 1.30063 1.15762 0.80687 0.80713 0.81822 1.90894 1.43843 1.76485 1.33479 1.47834 1.47902 1.09050 1.30383 1.21553 0.91323 0.98514 0.89737 1.21944 0.96213 0.99667 0.99332 1.21618 0.99912 0.96037 0.97196 1.18992 0.91621 0.95745 0.91672 0.95215 1.21108 1.31599 0.94586 1.08643 0.92321 1.25049 0.95906 0.95457 0.97574 1.69898 1.34660 1.18296 1.28748 0.86553 0.78260 0.82344 0.80951 1.19805 1.20997 1.21012 1.22275 0.99936 0.88256 0.88774 1.20474 0.75006 0.79237 0.85323 1.93187 1.29853 1.96434 1.96734 1.93227 1.88246 1.36235 1.96372 1.93179 1.86692 1.82237 1.54180 0.93554 0.94149 0.89426 0.88142 0.92354 0.87497 0.90059 0.91602 0.76348 0.92251 0.91792 0.92057 0.92162 0.92972 0.93157 0.92717 0.94018 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.03 8.45 -35.23 -0.30 -5.33 16 3 C 0.04 0.63 4.53 37.16 0.17 0.80 16 4 C 0.17 2.32 0.46 -131.82 -0.06 2.26 16 5 C -0.17 -2.37 8.03 37.16 0.30 -2.07 16 6 N -0.75 -10.91 4.90 -52.42 -0.26 -11.16 16 7 C 0.71 13.27 7.70 -86.92 -0.67 12.60 16 8 O -0.57 -12.65 11.99 5.29 0.06 -12.58 16 9 N -0.62 -11.64 2.97 -178.50 -0.53 -12.17 16 10 C 0.11 1.65 6.39 -3.71 -0.02 1.63 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 12 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 13 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -13.73 8.56 -34.44 -0.29 -14.02 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.88 -24.95 11.39 55.43 0.63 -24.32 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.95 5.41 -3.71 -0.02 2.93 16 24 C 0.45 5.78 2.20 37.16 0.08 5.86 16 25 F -0.18 -2.23 16.62 2.25 0.04 -2.20 16 26 F -0.16 -2.08 15.09 2.25 0.03 -2.05 16 27 F -0.18 -2.26 16.57 2.25 0.04 -2.22 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.64 6.19 -51.93 -0.32 1.32 16 32 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 33 H 0.11 1.82 6.15 -51.93 -0.32 1.50 16 34 H 0.08 1.06 7.22 -51.93 -0.37 0.69 16 35 H 0.06 0.89 7.95 -51.93 -0.41 0.47 16 36 H 0.40 4.99 5.72 -40.82 -0.23 4.75 16 37 H 0.06 0.70 5.65 -51.92 -0.29 0.41 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.13 3.38 5.11 -51.93 -0.27 3.12 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -29.34 361.00 -6.26 -35.59 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.39 Total: 5.85 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.01 Total: 9.34 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.16 Total: -47.65 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.23 Total: -17.91 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.34 -6.26 -35.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.153 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds