Wall clock time and date at job start Tue Mar 31 2020 21:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00341 * 2 1 4 4 C 1.53002 * 109.47760 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.46678 * 300.00246 * 4 3 2 6 6 N 1.46495 * 109.47339 * 180.02562 * 4 3 2 7 7 C 1.34780 * 119.99930 * 57.90109 * 6 4 3 8 8 O 1.21587 * 119.99982 * 5.08756 * 7 6 4 9 9 N 1.34772 * 119.99943 * 185.08741 * 7 6 4 10 10 C 1.46925 * 120.63278 * 354.86538 * 9 7 6 11 11 C 1.53192 * 108.77507 * 233.58888 * 10 9 7 12 12 C 1.53042 * 109.31102 * 305.35732 * 11 10 9 13 13 C 1.53041 * 109.53546 * 61.37118 * 12 11 10 14 14 H 1.08996 * 109.49968 * 58.58498 * 13 12 11 15 15 C 1.50697 * 109.49877 * 178.68204 * 13 12 11 16 16 H 1.08001 * 120.00044 * 359.83798 * 15 13 12 17 17 C 1.37875 * 120.00128 * 179.83242 * 15 13 12 18 18 N 1.31514 * 119.99980 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00258 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47263 * 119.99991 * 19 17 15 22 22 H 1.48496 * 109.47530 * 240.00552 * 19 17 15 23 23 C 1.46931 * 120.63232 * 174.84176 * 9 7 6 24 24 C 1.52998 * 109.46847 * 59.99844 * 4 3 2 25 25 F 1.39901 * 109.46820 * 174.60543 * 24 4 3 26 26 F 1.39899 * 109.47472 * 294.60081 * 24 4 3 27 27 F 1.39903 * 109.47220 * 54.60395 * 24 4 3 28 28 H 1.09001 * 109.47265 * 299.99310 * 1 2 3 29 29 H 1.08998 * 109.47527 * 59.99704 * 1 2 3 30 30 H 1.08999 * 109.47745 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47222 * 60.00290 * 3 2 1 32 32 H 1.09007 * 109.47335 * 300.00569 * 3 2 1 33 33 H 1.09000 * 109.46791 * 299.99858 * 5 4 3 34 34 H 1.08998 * 109.47168 * 59.99858 * 5 4 3 35 35 H 1.08994 * 109.46733 * 179.97438 * 5 4 3 36 36 H 0.96994 * 119.99989 * 237.89380 * 6 4 3 37 37 H 1.09008 * 109.58527 * 353.36915 * 10 9 7 38 38 H 1.08991 * 109.59355 * 113.65367 * 10 9 7 39 39 H 1.08996 * 109.50303 * 65.31545 * 11 10 9 40 40 H 1.09008 * 109.49845 * 185.41267 * 11 10 9 41 41 H 1.08999 * 109.45874 * 181.38692 * 12 11 10 42 42 H 1.08999 * 109.46551 * 301.35998 * 12 11 10 43 43 H 0.97001 * 119.99741 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58390 * 246.20320 * 23 9 7 45 45 H 1.08994 * 109.58233 * 6.62360 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9874 0.4251 1.2483 6 7 4.1313 2.5229 0.0000 7 6 3.8391 3.3902 0.9894 8 8 3.1558 3.0325 1.9293 9 7 4.3044 4.6540 0.9370 10 6 5.2222 5.0701 -0.1322 11 6 6.4679 5.6957 0.5031 12 6 6.0432 6.8269 1.4423 13 6 5.1636 6.2613 2.5596 14 1 5.7160 5.4969 3.1060 15 6 4.7725 7.3703 3.5020 16 1 5.1188 8.3777 3.3239 17 6 3.9723 7.0990 4.5916 18 7 3.5509 5.8723 4.8088 19 14 3.4881 8.4736 5.7603 20 1 4.0880 9.7509 5.2976 21 1 2.0090 8.6028 5.7866 22 1 3.9820 8.1600 7.1251 23 6 3.9031 5.6421 1.9477 24 6 3.9864 0.4256 -1.2502 25 9 5.3839 0.4217 -1.3144 26 9 3.5188 -0.8916 -1.1899 27 9 3.4688 1.0525 -2.3888 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6660 0.9658 2.1385 34 1 3.5440 -0.5707 1.2483 35 1 5.0739 0.3387 1.2477 36 1 4.7361 2.7849 -0.7116 37 1 5.5111 4.2016 -0.7243 38 1 4.7296 5.8015 -0.7727 39 1 7.0082 4.9366 1.0688 40 1 7.1135 6.0953 -0.2791 41 1 6.9291 7.2900 1.8768 42 1 5.4816 7.5736 0.8809 43 1 2.9883 5.6814 5.5756 44 1 3.3036 6.4221 1.4783 45 1 3.3214 5.1511 2.7278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932319086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:33 Heat of formation + Delta-G solvation = -238.042661 kcal Electronic energy + Delta-G solvation = -32241.340855 eV Core-core repulsion = 27457.677935 eV Total energy + Delta-G solvation = -4783.662919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.24778 -48.74371 -48.66055 -41.69093 -39.50735 -38.41074 -36.67846 -35.36144 -33.70999 -32.16968 -31.31566 -28.57198 -27.63814 -27.00296 -26.44205 -26.02499 -23.48298 -22.78685 -21.33102 -20.56641 -19.85492 -19.53344 -19.35545 -18.52608 -17.92297 -17.49583 -17.23207 -16.62610 -16.57930 -16.34478 -15.91530 -15.57635 -15.47685 -15.22639 -15.16476 -15.11347 -14.90063 -14.84808 -14.78529 -14.50839 -14.33696 -14.06466 -13.96779 -13.89002 -13.53756 -13.18131 -12.89994 -12.73145 -12.63143 -12.53165 -12.30647 -12.24365 -12.20317 -11.83026 -11.61023 -11.13873 -10.94640 -10.84597 -10.68464 -10.50736 -10.49127 -9.34530 -8.08061 -6.24558 1.17016 1.41369 1.43660 1.54662 1.57332 2.03905 2.40766 2.43735 2.60399 2.78239 2.97166 3.20080 3.24549 3.56615 3.74114 4.00004 4.14861 4.22304 4.29556 4.43238 4.49292 4.54291 4.58293 4.61585 4.62669 4.74169 4.81261 4.82500 4.85814 5.11280 5.12469 5.14803 5.26018 5.29928 5.32792 5.58106 5.62664 5.83307 5.95839 5.98022 6.10000 6.37689 6.87971 6.95681 7.45040 7.53870 8.95041 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.003544 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.911839 B = 7898.320795 C = 9007.088372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.163 3.837 5 C -0.160 4.160 6 N -0.728 5.728 7 C 0.707 3.293 8 O -0.611 6.611 9 N -0.621 5.621 10 C 0.107 3.893 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.037 3.963 14 H -0.013 1.013 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.954 3.046 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.285 1.285 23 C 0.144 3.856 24 C 0.467 3.533 25 F -0.175 7.175 26 F -0.159 7.159 27 F -0.176 7.176 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.259 0.741 44 H 0.038 0.962 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -10.297 -16.505 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.073 3.927 5 C -0.218 4.218 6 N -0.391 5.391 7 C 0.408 3.592 8 O -0.490 6.490 9 N -0.357 5.357 10 C -0.015 4.015 11 C -0.164 4.164 12 C -0.142 4.142 13 C 0.018 3.982 14 H 0.005 0.995 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.211 1.211 23 C 0.021 3.979 24 C 0.412 3.588 25 F -0.156 7.156 26 F -0.140 7.140 27 F -0.157 7.157 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.252 0.748 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.496 -10.813 -15.756 19.116 hybrid contribution -0.241 0.897 0.675 1.148 sum -0.737 -9.916 -15.081 18.064 Atomic orbital electron populations 1.22960 0.78789 1.04371 1.00698 1.87812 1.21934 1.25762 1.95654 1.22789 0.90338 0.86498 1.02984 1.20978 0.94431 0.83481 0.93815 1.22197 1.02345 1.01074 0.96180 1.44859 1.52678 1.12415 1.29165 1.15849 0.80299 0.81005 0.82010 1.90886 1.45503 1.77283 1.35335 1.47705 1.48792 1.08539 1.30645 1.21899 0.90240 1.00609 0.88774 1.21903 0.96989 0.97995 0.99513 1.21503 0.98856 0.97469 0.96401 1.18924 0.92345 0.94145 0.92805 0.99530 1.21533 1.31122 0.95344 1.09300 0.92117 1.25833 0.96072 0.97440 0.99343 1.70087 1.35479 1.20327 1.29144 0.85569 0.77813 0.79976 0.78684 1.18577 1.20848 1.21067 1.21644 0.98923 0.88494 0.88810 1.20065 0.75162 0.78969 0.84650 1.93205 1.29357 1.96397 1.96674 1.93234 1.88303 1.36135 1.96344 1.93196 1.86661 1.82140 1.53693 0.94089 0.92873 0.87223 0.91071 0.91353 0.90701 0.88959 0.90823 0.74770 0.88711 0.89683 0.93198 0.87818 0.93161 0.92295 0.93190 0.94336 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.39 -9.94 8.45 -148.98 -1.26 -11.20 16 3 C 0.05 1.44 4.53 71.98 0.33 1.76 16 4 C 0.16 4.35 0.46 3.61 0.00 4.35 16 5 C -0.16 -4.55 8.03 71.99 0.58 -3.97 16 6 N -0.73 -20.33 4.90 -438.00 -2.14 -22.48 16 7 C 0.71 26.72 7.70 179.06 1.38 28.09 16 8 O -0.61 -28.48 11.99 -3.99 -0.05 -28.53 16 9 N -0.62 -23.35 2.97 -836.91 -2.49 -25.84 16 10 C 0.11 2.82 6.39 86.36 0.55 3.37 16 11 C -0.13 -3.51 6.08 30.67 0.19 -3.32 16 12 C -0.10 -3.87 5.11 30.62 0.16 -3.71 16 13 C 0.04 1.82 2.25 -11.46 -0.03 1.79 16 14 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 15 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 16 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.91 -54.23 11.39 21.45 0.24 -53.99 16 19 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.14 6.84 5.41 86.36 0.47 7.31 16 24 C 0.47 10.77 2.20 71.98 0.16 10.93 16 25 F -0.17 -3.83 16.62 44.97 0.75 -3.08 16 26 F -0.16 -3.80 15.09 44.97 0.68 -3.12 16 27 F -0.18 -3.85 16.57 44.97 0.75 -3.11 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.42 6.19 -2.39 -0.01 2.41 16 32 H 0.07 1.72 7.68 -2.38 -0.02 1.70 16 33 H 0.07 2.67 6.15 -2.39 -0.01 2.66 16 34 H 0.09 2.38 7.22 -2.39 -0.02 2.36 16 35 H 0.07 1.93 7.95 -2.39 -0.02 1.91 16 36 H 0.41 9.11 5.72 -92.71 -0.53 8.58 16 37 H 0.09 1.84 5.65 -2.38 -0.01 1.82 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 4.65 5.11 -2.39 -0.01 4.64 16 Total: -1.00 -67.47 361.00 4.69 -62.78 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.49 Total: 22.02 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.70 Total: 20.98 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -4.39 Total: -102.31 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.31 Total: -39.74 kcal Atomic # 9 Polarization: -11.48 SS G_CDS: 2.17 Total: -9.31 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.47 4.69 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.265 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds