Wall clock time and date at job start Tue Mar 31 2020 21:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99853 * 2 1 4 4 C 1.53006 * 109.46837 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47317 * 300.00197 * 4 3 2 6 6 N 1.46507 * 109.46782 * 180.02562 * 4 3 2 7 7 C 1.34775 * 119.99597 * 173.62429 * 6 4 3 8 8 O 1.21582 * 120.00059 * 4.85965 * 7 6 4 9 9 N 1.34776 * 119.99787 * 184.85450 * 7 6 4 10 10 C 1.46928 * 120.63019 * 354.99216 * 9 7 6 11 11 C 1.53196 * 108.77745 * 126.38459 * 10 9 7 12 12 C 1.53043 * 109.31051 * 54.63518 * 11 10 9 13 13 C 1.53042 * 109.53578 * 298.63255 * 12 11 10 14 14 H 1.08995 * 109.49965 * 301.41462 * 13 12 11 15 15 C 1.50701 * 109.49527 * 181.34965 * 13 12 11 16 16 H 1.07999 * 120.00152 * 0.06488 * 15 13 12 17 17 C 1.37883 * 119.99671 * 180.02562 * 15 13 12 18 18 N 1.31507 * 120.00194 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99610 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47083 * 89.99914 * 19 17 15 21 21 H 1.48501 * 109.46975 * 209.99634 * 19 17 15 22 22 H 1.48500 * 109.47081 * 329.99845 * 19 17 15 23 23 C 1.46924 * 120.63028 * 174.98411 * 9 7 6 24 24 C 1.52999 * 109.46859 * 60.00273 * 4 3 2 25 25 F 1.39902 * 109.47066 * 185.99484 * 24 4 3 26 26 F 1.39894 * 109.47453 * 305.99377 * 24 4 3 27 27 F 1.39902 * 109.47112 * 65.99789 * 24 4 3 28 28 H 1.09000 * 109.47247 * 60.00007 * 1 2 3 29 29 H 1.09005 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47139 * 299.99642 * 1 2 3 31 31 H 1.09001 * 109.46822 * 60.00376 * 3 2 1 32 32 H 1.08997 * 109.47101 * 300.00029 * 3 2 1 33 33 H 1.09001 * 109.47319 * 300.00224 * 5 4 3 34 34 H 1.09001 * 109.47415 * 59.99892 * 5 4 3 35 35 H 1.08993 * 109.47438 * 180.02562 * 5 4 3 36 36 H 0.96996 * 119.99638 * 353.62539 * 6 4 3 37 37 H 1.08997 * 109.58935 * 6.59912 * 10 9 7 38 38 H 1.08999 * 109.58356 * 246.17507 * 10 9 7 39 39 H 1.08996 * 109.49505 * 294.68298 * 11 10 9 40 40 H 1.08999 * 109.49750 * 174.58105 * 11 10 9 41 41 H 1.08997 * 109.45904 * 178.61480 * 12 11 10 42 42 H 1.09004 * 109.45204 * 58.64638 * 12 11 10 43 43 H 0.96999 * 119.99860 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.58575 * 113.82635 * 23 9 7 45 45 H 1.09002 * 109.58771 * 353.39790 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9874 0.4251 1.2482 6 7 4.1313 2.5230 0.0000 7 6 5.4651 2.6667 0.1292 8 8 6.1825 1.6855 0.1564 9 7 6.0038 3.8982 0.2282 10 6 5.1644 5.0959 0.0873 11 6 5.3733 5.9913 1.3127 12 6 6.8662 6.2857 1.4759 13 6 7.6247 4.9754 1.7001 14 1 7.2336 4.4758 2.5864 15 6 9.0900 5.2693 1.8937 16 1 9.4452 6.2887 1.8613 17 6 9.9771 4.2368 2.1131 18 7 9.5444 2.9956 2.1539 19 14 11.7933 4.6012 2.3538 20 1 12.0685 4.8138 3.7975 21 1 12.5978 3.4547 1.8602 22 1 12.1575 5.8246 1.5950 23 6 7.4414 4.0685 0.4791 24 6 3.9863 0.4256 -1.2503 25 9 5.3647 0.1955 -1.1841 26 9 3.3122 -0.7981 -1.3213 27 9 3.6945 1.1855 -2.3881 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6662 0.9658 2.1384 34 1 3.5441 -0.5707 1.2482 35 1 5.0740 0.3394 1.2480 36 1 3.5658 3.3057 -0.0926 37 1 4.1167 4.8024 0.0236 38 1 5.4497 5.6380 -0.8143 39 1 5.0034 5.4821 2.2026 40 1 4.8308 6.9269 1.1763 41 1 7.0152 6.9427 2.3327 42 1 7.2408 6.7725 0.5754 43 1 10.1685 2.2692 2.3078 44 1 7.9123 4.5268 -0.3905 45 1 7.8959 3.0971 0.6740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932319092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:37 Heat of formation + Delta-G solvation = -213.922032 kcal Electronic energy + Delta-G solvation = -32508.505230 eV Core-core repulsion = 27725.888260 eV Total energy + Delta-G solvation = -4782.616970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.68701 -47.25713 -47.00652 -40.14142 -38.50422 -37.10130 -35.33245 -33.50417 -32.01427 -30.80240 -29.63472 -27.70458 -26.35469 -25.56055 -25.08664 -24.45141 -21.88292 -21.24492 -19.99696 -19.02438 -18.34355 -17.96670 -17.60715 -17.55355 -16.61820 -16.22947 -15.89607 -15.47781 -14.96324 -14.75726 -14.44084 -14.13243 -14.00086 -13.79128 -13.76956 -13.59396 -13.50584 -13.31329 -13.18536 -13.14412 -12.76613 -12.61175 -12.46959 -12.42281 -12.04703 -11.97423 -11.75103 -11.65500 -11.06588 -10.99366 -10.92224 -10.50855 -10.42397 -10.23786 -10.05888 -9.90248 -9.36649 -9.13640 -9.07291 -8.97244 -8.42008 -7.71599 -5.98778 -4.07532 2.55808 2.93337 3.31927 3.39794 3.41695 3.51263 3.67311 4.00342 4.10487 4.27781 4.43182 4.46178 4.74545 4.82812 5.01139 5.04915 5.08852 5.18142 5.23388 5.31498 5.37730 5.44316 5.56633 5.71852 5.85910 5.93489 6.10915 6.27616 6.37758 6.46860 6.55260 6.61097 6.70071 6.75669 6.95505 7.00372 7.29566 7.38447 7.71112 7.90252 8.04014 8.39918 8.43694 8.95474 9.11298 9.58175 11.06392 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003525 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.973836 B = 7941.832391 C = 8671.307982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.058 3.942 4 C 0.165 3.835 5 C -0.168 4.168 6 N -0.745 5.745 7 C 0.698 3.302 8 O -0.554 6.554 9 N -0.616 5.616 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.878 5.878 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.129 3.871 24 C 0.438 3.562 25 F -0.150 7.150 26 F -0.174 7.174 27 F -0.192 7.192 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.398 0.602 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.040 0.960 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.857 -1.485 -4.671 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.020 4.020 4 C 0.074 3.926 5 C -0.226 4.226 6 N -0.407 5.407 7 C 0.400 3.600 8 O -0.429 6.429 9 N -0.353 5.353 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.009 3.991 24 C 0.382 3.618 25 F -0.131 7.131 26 F -0.156 7.156 27 F -0.174 7.174 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.236 0.764 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.080 -2.585 -4.640 19.805 hybrid contribution 0.423 0.822 -0.197 0.945 sum -18.657 -1.764 -4.836 19.354 Atomic orbital electron populations 1.22792 0.80256 1.03243 1.00108 1.87984 1.20127 1.25381 1.95446 1.22556 0.90191 0.86768 1.02452 1.20914 0.92880 0.84816 0.93997 1.22295 1.06265 1.00064 0.93929 1.45218 1.07504 1.06060 1.81957 1.15910 0.80819 0.84807 0.78462 1.90987 1.59216 1.36528 1.56157 1.47804 1.11306 1.02258 1.73914 1.21532 0.93174 0.87546 0.98759 1.21949 0.99349 0.98250 0.97579 1.21619 0.92379 1.00308 1.00479 1.18986 0.94927 0.90086 0.93888 0.95336 1.21059 0.91736 0.93168 1.50136 0.92403 1.25047 0.98862 0.95159 0.94894 1.69874 1.34777 0.98629 1.48248 0.86604 0.85270 0.77888 0.78293 1.20733 1.21162 1.19944 1.22249 0.73959 1.05465 0.97405 1.20965 0.76986 0.78441 0.85385 1.93380 1.29054 1.94509 1.96111 1.93189 1.80289 1.45502 1.96573 1.93119 1.93393 1.76107 1.54773 0.93888 0.89110 0.93777 0.90528 0.91734 0.90847 0.90310 0.87743 0.76401 0.92339 0.91896 0.92151 0.92302 0.93033 0.93163 0.92612 0.94126 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.37 -3.96 8.04 -35.23 -0.28 -4.24 16 3 C 0.06 0.58 4.84 37.16 0.18 0.76 16 4 C 0.16 2.27 0.64 -131.82 -0.08 2.19 16 5 C -0.17 -2.46 7.92 37.15 0.29 -2.16 16 6 N -0.75 -10.75 4.83 -52.41 -0.25 -11.00 16 7 C 0.70 13.61 7.67 -86.92 -0.67 12.94 16 8 O -0.55 -13.02 10.55 5.29 0.06 -12.97 16 9 N -0.62 -11.95 2.97 -178.49 -0.53 -12.48 16 10 C 0.11 1.66 6.43 -3.71 -0.02 1.64 16 11 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 12 C -0.11 -2.11 5.11 -26.69 -0.14 -2.24 16 13 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.52 -13.94 8.56 -34.44 -0.29 -14.23 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.34 11.40 55.43 0.63 -24.71 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.13 3.08 5.39 -3.71 -0.02 3.06 16 24 C 0.44 7.08 2.29 37.16 0.09 7.16 16 25 F -0.15 -2.98 13.26 2.25 0.03 -2.95 16 26 F -0.17 -2.70 14.99 2.25 0.03 -2.66 16 27 F -0.19 -3.03 16.85 2.25 0.04 -2.99 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.06 7.50 -51.93 -0.39 0.67 16 35 H 0.10 1.94 5.58 -51.93 -0.29 1.65 16 36 H 0.40 4.44 5.94 -40.82 -0.24 4.20 16 37 H 0.06 0.64 5.56 -51.93 -0.29 0.36 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.12 3.47 5.16 -51.93 -0.27 3.21 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -31.89 358.72 -6.42 -38.31 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.51 Total: 3.44 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.02 Total: 10.70 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.15 Total: -48.19 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.23 Total: -17.21 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.10 Total: -8.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.89 -6.42 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.611 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds