Wall clock time and date at job start Tue Mar 31 2020 21:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99853 * 2 1 4 4 C 1.53006 * 109.46837 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47317 * 300.00197 * 4 3 2 6 6 N 1.46507 * 109.46782 * 180.02562 * 4 3 2 7 7 C 1.34775 * 119.99597 * 173.62429 * 6 4 3 8 8 O 1.21582 * 120.00059 * 4.85965 * 7 6 4 9 9 N 1.34776 * 119.99787 * 184.85450 * 7 6 4 10 10 C 1.46928 * 120.63019 * 354.99216 * 9 7 6 11 11 C 1.53196 * 108.77745 * 126.38459 * 10 9 7 12 12 C 1.53043 * 109.31051 * 54.63518 * 11 10 9 13 13 C 1.53042 * 109.53578 * 298.63255 * 12 11 10 14 14 H 1.08995 * 109.49965 * 301.41462 * 13 12 11 15 15 C 1.50701 * 109.49527 * 181.34965 * 13 12 11 16 16 H 1.07999 * 120.00152 * 0.06488 * 15 13 12 17 17 C 1.37883 * 119.99671 * 180.02562 * 15 13 12 18 18 N 1.31507 * 120.00194 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99610 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47083 * 89.99914 * 19 17 15 21 21 H 1.48501 * 109.46975 * 209.99634 * 19 17 15 22 22 H 1.48500 * 109.47081 * 329.99845 * 19 17 15 23 23 C 1.46924 * 120.63028 * 174.98411 * 9 7 6 24 24 C 1.52999 * 109.46859 * 60.00273 * 4 3 2 25 25 F 1.39902 * 109.47066 * 185.99484 * 24 4 3 26 26 F 1.39894 * 109.47453 * 305.99377 * 24 4 3 27 27 F 1.39902 * 109.47112 * 65.99789 * 24 4 3 28 28 H 1.09000 * 109.47247 * 60.00007 * 1 2 3 29 29 H 1.09005 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47139 * 299.99642 * 1 2 3 31 31 H 1.09001 * 109.46822 * 60.00376 * 3 2 1 32 32 H 1.08997 * 109.47101 * 300.00029 * 3 2 1 33 33 H 1.09001 * 109.47319 * 300.00224 * 5 4 3 34 34 H 1.09001 * 109.47415 * 59.99892 * 5 4 3 35 35 H 1.08993 * 109.47438 * 180.02562 * 5 4 3 36 36 H 0.96996 * 119.99638 * 353.62539 * 6 4 3 37 37 H 1.08997 * 109.58935 * 6.59912 * 10 9 7 38 38 H 1.08999 * 109.58356 * 246.17507 * 10 9 7 39 39 H 1.08996 * 109.49505 * 294.68298 * 11 10 9 40 40 H 1.08999 * 109.49750 * 174.58105 * 11 10 9 41 41 H 1.08997 * 109.45904 * 178.61480 * 12 11 10 42 42 H 1.09004 * 109.45204 * 58.64638 * 12 11 10 43 43 H 0.96999 * 119.99860 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.58575 * 113.82635 * 23 9 7 45 45 H 1.09002 * 109.58771 * 353.39790 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9874 0.4251 1.2482 6 7 4.1313 2.5230 0.0000 7 6 5.4651 2.6667 0.1292 8 8 6.1825 1.6855 0.1564 9 7 6.0038 3.8982 0.2282 10 6 5.1644 5.0959 0.0873 11 6 5.3733 5.9913 1.3127 12 6 6.8662 6.2857 1.4759 13 6 7.6247 4.9754 1.7001 14 1 7.2336 4.4758 2.5864 15 6 9.0900 5.2693 1.8937 16 1 9.4452 6.2887 1.8613 17 6 9.9771 4.2368 2.1131 18 7 9.5444 2.9956 2.1539 19 14 11.7933 4.6012 2.3538 20 1 12.0685 4.8138 3.7975 21 1 12.5978 3.4547 1.8602 22 1 12.1575 5.8246 1.5950 23 6 7.4414 4.0685 0.4791 24 6 3.9863 0.4256 -1.2503 25 9 5.3647 0.1955 -1.1841 26 9 3.3122 -0.7981 -1.3213 27 9 3.6945 1.1855 -2.3881 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6662 0.9658 2.1384 34 1 3.5441 -0.5707 1.2482 35 1 5.0740 0.3394 1.2480 36 1 3.5658 3.3057 -0.0926 37 1 4.1167 4.8024 0.0236 38 1 5.4497 5.6380 -0.8143 39 1 5.0034 5.4821 2.2026 40 1 4.8308 6.9269 1.1763 41 1 7.0152 6.9427 2.3327 42 1 7.2408 6.7725 0.5754 43 1 10.1685 2.2692 2.3078 44 1 7.9123 4.5268 -0.3905 45 1 7.8959 3.0971 0.6740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932319092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:36 Heat of formation + Delta-G solvation = -235.297423 kcal Electronic energy + Delta-G solvation = -32509.432137 eV Core-core repulsion = 27725.888260 eV Total energy + Delta-G solvation = -4783.543877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.98117 -48.51810 -48.38045 -41.55114 -39.47187 -38.45717 -36.60904 -35.33476 -33.65490 -32.12991 -31.28359 -28.51244 -27.40011 -26.97784 -26.53004 -25.89016 -23.44522 -22.52527 -21.43004 -20.50717 -19.63578 -19.27236 -19.04314 -18.80051 -18.19666 -17.39345 -16.77768 -16.60131 -16.42101 -16.31927 -16.00326 -15.39372 -15.23391 -15.17662 -15.10375 -14.90655 -14.82852 -14.63023 -14.53240 -14.44204 -14.25753 -14.17264 -13.89435 -13.51766 -13.44346 -13.17819 -12.87510 -12.75239 -12.63617 -12.53023 -12.24422 -12.21248 -12.04731 -11.81157 -11.59113 -11.06493 -10.91643 -10.75786 -10.69461 -10.48631 -10.43772 -9.30175 -8.08289 -6.24603 1.32635 1.42270 1.43062 1.52980 1.70387 2.22109 2.42971 2.60354 2.83188 2.83777 3.16177 3.20759 3.40009 3.66566 3.82303 4.04396 4.18538 4.26477 4.32782 4.34293 4.54770 4.59316 4.63352 4.64939 4.67449 4.76643 4.83747 4.87824 4.94980 5.14324 5.18016 5.20952 5.29841 5.33284 5.36542 5.58650 5.66344 5.88235 5.97182 6.08288 6.13658 6.38358 6.88120 7.03709 7.45075 7.62637 8.94567 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003525 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.973836 B = 7941.832391 C = 8671.307982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.065 3.935 4 C 0.166 3.834 5 C -0.162 4.162 6 N -0.722 5.722 7 C 0.692 3.308 8 O -0.601 6.601 9 N -0.622 5.622 10 C 0.107 3.893 11 C -0.124 4.124 12 C -0.106 4.106 13 C 0.040 3.960 14 H -0.011 1.011 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.912 5.912 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.263 1.263 23 C 0.146 3.854 24 C 0.430 3.570 25 F -0.179 7.179 26 F -0.171 7.171 27 F -0.190 7.190 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.258 0.742 44 H 0.030 0.970 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.805 0.658 -5.017 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.013 4.013 4 C 0.076 3.924 5 C -0.220 4.220 6 N -0.385 5.385 7 C 0.394 3.606 8 O -0.479 6.479 9 N -0.358 5.358 10 C -0.015 4.015 11 C -0.162 4.162 12 C -0.144 4.144 13 C 0.021 3.979 14 H 0.008 0.992 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.187 1.187 23 C 0.023 3.977 24 C 0.374 3.626 25 F -0.160 7.160 26 F -0.153 7.153 27 F -0.171 7.171 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.260 0.740 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.102 -0.389 -4.995 22.663 hybrid contribution 1.294 0.111 -0.111 1.304 sum -20.808 -0.278 -5.106 21.427 Atomic orbital electron populations 1.22994 0.78226 1.04181 1.01480 1.87946 1.22275 1.25752 1.95745 1.22582 0.86603 0.87204 1.04864 1.21073 0.95727 0.83641 0.91985 1.22178 1.03293 1.01236 0.95256 1.44842 1.05702 1.07361 1.80626 1.16118 0.82194 0.84136 0.78172 1.90981 1.60887 1.38182 1.57852 1.47674 1.10196 1.04071 1.73878 1.21917 0.94712 0.85670 0.99198 1.21896 0.96349 1.00391 0.97539 1.21511 0.95004 0.97198 1.00640 1.18902 0.94268 0.92484 0.92260 0.99246 1.21521 0.93513 0.93160 1.49242 0.92108 1.25855 1.03146 0.94956 0.94888 1.70075 1.35832 0.99464 1.49648 0.85619 0.80227 0.77772 0.78431 1.20096 1.21585 1.18712 1.21585 0.76791 1.02615 0.96722 1.21424 0.75741 0.78949 0.86509 1.93327 1.31632 1.94747 1.96308 1.93187 1.79946 1.45493 1.96633 1.93114 1.93212 1.75944 1.54857 0.92766 0.88556 0.92073 0.87541 0.89764 0.89300 0.89434 0.92213 0.74044 0.87861 0.90430 0.92701 0.87747 0.93034 0.92697 0.93252 0.95146 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -7.37 8.04 -148.98 -1.20 -8.57 16 3 C 0.06 1.06 4.84 71.98 0.35 1.41 16 4 C 0.17 4.34 0.64 3.60 0.00 4.34 16 5 C -0.16 -4.73 7.92 71.98 0.57 -4.16 16 6 N -0.72 -19.45 4.83 -438.01 -2.12 -21.57 16 7 C 0.69 27.16 7.67 179.06 1.37 28.53 16 8 O -0.60 -29.81 10.55 -3.97 -0.04 -29.86 16 9 N -0.62 -23.95 2.97 -836.90 -2.49 -26.43 16 10 C 0.11 2.76 6.43 86.36 0.56 3.31 16 11 C -0.12 -3.29 6.08 30.67 0.19 -3.10 16 12 C -0.11 -3.90 5.11 30.62 0.16 -3.75 16 13 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 14 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 15 C -0.54 -29.28 8.56 25.60 0.22 -29.06 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.01 0.63 5.30 84.66 0.45 1.08 16 18 N -0.91 -55.46 11.40 21.45 0.24 -55.22 16 19 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.15 7.19 5.39 86.36 0.47 7.66 16 24 C 0.43 13.75 2.29 71.98 0.16 13.92 16 25 F -0.18 -7.47 13.26 44.97 0.60 -6.87 16 26 F -0.17 -5.23 14.99 44.97 0.67 -4.55 16 27 F -0.19 -5.74 16.85 44.97 0.76 -4.98 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.07 7.96 -2.39 -0.02 1.05 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 2.35 7.50 -2.39 -0.02 2.33 16 35 H 0.06 2.34 5.58 -2.39 -0.01 2.33 16 36 H 0.42 7.61 5.94 -92.71 -0.55 7.06 16 37 H 0.10 1.73 5.56 -2.39 -0.01 1.72 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 4.56 5.16 -2.39 -0.01 4.55 16 Total: -1.00 -76.44 358.72 4.64 -71.81 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.47 Total: 16.08 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.71 Total: 23.65 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.36 Total: -103.22 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.24 Total: -38.42 kcal Atomic # 9 Polarization: -18.43 SS G_CDS: 2.03 Total: -16.41 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -76.44 4.64 -71.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.491 kcal (2) G-P(sol) polarization free energy of solvation -76.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds