Wall clock time and date at job start Tue Mar 31 2020 21:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99802 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47315 * 60.00315 * 4 3 2 6 6 N 1.46502 * 109.47099 * 180.02562 * 4 3 2 7 7 C 1.34776 * 119.99543 * 297.68079 * 6 4 3 8 8 O 1.21589 * 120.00349 * 5.10575 * 7 6 4 9 9 N 1.34774 * 119.99595 * 185.10864 * 7 6 4 10 10 C 1.46925 * 120.63376 * 355.23256 * 9 7 6 11 11 C 1.53193 * 108.77975 * 126.41430 * 10 9 7 12 12 C 1.53034 * 109.31378 * 54.63294 * 11 10 9 13 13 C 1.53044 * 109.53959 * 298.64066 * 12 11 10 14 14 H 1.09000 * 109.49597 * 301.40928 * 13 12 11 15 15 C 1.50705 * 109.49897 * 181.31315 * 13 12 11 16 16 H 1.07999 * 119.99947 * 0.16224 * 15 13 12 17 17 C 1.37871 * 119.99874 * 180.15853 * 15 13 12 18 18 N 1.31517 * 119.99725 * 179.97438 * 17 15 13 19 19 Si 1.86799 * 120.00341 * 0.02562 * 17 15 13 20 20 H 1.48496 * 109.47223 * 89.99413 * 19 17 15 21 21 H 1.48504 * 109.47073 * 209.99749 * 19 17 15 22 22 H 1.48502 * 109.46751 * 329.99521 * 19 17 15 23 23 C 1.46932 * 120.62971 * 175.25531 * 9 7 6 24 24 C 1.53000 * 109.47177 * 300.00233 * 4 3 2 25 25 F 1.39903 * 109.47482 * 305.53636 * 24 4 3 26 26 F 1.39908 * 109.47134 * 65.53340 * 24 4 3 27 27 F 1.39898 * 109.47489 * 185.53737 * 24 4 3 28 28 H 1.08994 * 109.47730 * 299.99800 * 1 2 3 29 29 H 1.09002 * 109.47137 * 60.00237 * 1 2 3 30 30 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46890 * 60.00513 * 3 2 1 32 32 H 1.08997 * 109.47498 * 300.00433 * 3 2 1 33 33 H 1.08994 * 109.47448 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47030 * 300.00019 * 5 4 3 35 35 H 1.08998 * 109.47133 * 59.99599 * 5 4 3 36 36 H 0.96998 * 120.00117 * 117.68003 * 6 4 3 37 37 H 1.09000 * 109.58727 * 246.20262 * 10 9 7 38 38 H 1.09003 * 109.58701 * 6.62202 * 10 9 7 39 39 H 1.08997 * 109.50286 * 174.59063 * 11 10 9 40 40 H 1.09005 * 109.49474 * 294.68418 * 11 10 9 41 41 H 1.09002 * 109.46095 * 58.65478 * 12 11 10 42 42 H 1.09000 * 109.46292 * 178.61650 * 12 11 10 43 43 H 0.97004 * 119.99994 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.58578 * 353.37267 * 23 9 7 45 45 H 1.09003 * 109.58552 * 113.80089 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 7 4.1313 2.5231 0.0013 7 6 3.9104 3.3594 -1.0323 8 8 3.1432 3.0399 -1.9198 9 7 4.5401 4.5500 -1.0820 10 6 5.3885 4.9953 0.0317 11 6 6.7699 5.3648 -0.5178 12 6 6.6100 6.3959 -1.6373 13 6 5.7832 5.7922 -2.7749 14 1 6.2779 4.8955 -3.1480 15 6 5.6536 6.7970 -3.8906 16 1 6.1169 7.7683 -3.7992 17 6 4.9436 6.4763 -5.0281 18 7 4.8300 7.3533 -6.0015 19 14 4.1417 4.7966 -5.1861 20 1 2.7617 4.8536 -4.6407 21 1 4.0925 4.4042 -6.6176 22 1 4.9336 3.7966 -4.4257 23 6 4.3906 5.4276 -2.2510 24 6 3.9864 0.4256 1.2502 25 9 3.4663 1.0506 2.3887 26 9 3.5213 -0.8925 1.1884 27 9 5.3838 0.4244 1.3162 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 5.0740 0.3396 -1.2480 34 1 3.5441 -0.5705 -1.2483 35 1 3.6661 0.9660 -2.1384 36 1 4.6847 2.8072 0.7455 37 1 4.9394 5.8671 0.5074 38 1 5.4883 4.1901 0.7597 39 1 7.3785 5.7873 0.2817 40 1 7.2553 4.4720 -0.9121 41 1 6.1023 7.2786 -1.2483 42 1 7.5931 6.6790 -2.0135 43 1 4.3308 7.1276 -6.8020 44 1 3.8320 4.9077 -3.0292 45 1 3.8601 6.3347 -1.9614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932319097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:39 Heat of formation + Delta-G solvation = -233.697489 kcal Electronic energy + Delta-G solvation = -32491.203290 eV Core-core repulsion = 27707.728791 eV Total energy + Delta-G solvation = -4783.474499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.27102 -48.76598 -48.68525 -41.87706 -39.63439 -38.54770 -36.80322 -35.42093 -33.89491 -32.47037 -31.81569 -28.60960 -27.69806 -27.03061 -26.51443 -26.18574 -23.59041 -22.85322 -21.32363 -20.65954 -20.00636 -19.55878 -19.44223 -18.90091 -18.25468 -17.55328 -17.33357 -16.83386 -16.64657 -16.45579 -15.91612 -15.59604 -15.50993 -15.49654 -15.35077 -15.13570 -14.94257 -14.91322 -14.85238 -14.80617 -14.61162 -14.14381 -14.05328 -13.94061 -13.76535 -13.29888 -13.09902 -12.90633 -12.78184 -12.56643 -12.34842 -12.30125 -12.11255 -11.83170 -11.57553 -11.33989 -11.05776 -11.00216 -10.79677 -10.71587 -10.62401 -9.55033 -8.37285 -6.39479 1.05283 1.25978 1.32837 1.42091 1.50918 1.87471 2.22670 2.37125 2.51051 2.68492 2.93320 3.00355 3.18396 3.51839 3.69983 3.92236 4.03334 4.13015 4.19908 4.39603 4.43771 4.44252 4.49714 4.53786 4.55009 4.56576 4.63344 4.70768 4.80811 4.86056 4.97736 5.01220 5.04952 5.14159 5.21351 5.38896 5.53116 5.60014 5.68446 5.78352 5.96030 6.28148 6.69093 6.77542 7.26323 7.33263 8.78715 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.004116 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.692244 B = 6800.498549 C = 7882.050119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.051 3.949 4 C 0.161 3.839 5 C -0.163 4.163 6 N -0.724 5.724 7 C 0.710 3.290 8 O -0.617 6.617 9 N -0.621 5.621 10 C 0.107 3.893 11 C -0.127 4.127 12 C -0.098 4.098 13 C 0.004 3.996 14 H 0.015 0.985 15 C -0.511 4.511 16 H 0.050 0.950 17 C 0.028 3.972 18 N -0.939 5.939 19 Si 0.939 3.061 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.264 1.264 23 C 0.128 3.872 24 C 0.467 3.533 25 F -0.175 7.175 26 F -0.159 7.159 27 F -0.175 7.175 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.266 0.734 44 H 0.051 0.949 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -14.840 20.723 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.028 4.028 4 C 0.071 3.929 5 C -0.221 4.221 6 N -0.387 5.387 7 C 0.411 3.589 8 O -0.498 6.498 9 N -0.357 5.357 10 C -0.015 4.015 11 C -0.165 4.165 12 C -0.135 4.135 13 C -0.016 4.016 14 H 0.033 0.967 15 C -0.549 4.549 16 H 0.068 0.932 17 C -0.171 4.171 18 N -0.579 5.579 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.189 1.189 23 C 0.006 3.994 24 C 0.412 3.588 25 F -0.156 7.156 26 F -0.141 7.141 27 F -0.156 7.156 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.347 -15.210 19.961 25.318 hybrid contribution -0.435 -0.078 -0.438 0.622 sum -3.782 -15.288 19.523 25.083 Atomic orbital electron populations 1.22955 0.78763 1.04329 1.00736 1.87821 1.21941 1.25900 1.95673 1.22854 0.90133 0.86498 1.03277 1.21022 0.94607 0.83303 0.93948 1.22205 1.02511 1.01310 0.96038 1.44823 1.56423 1.13270 1.24213 1.15804 0.80653 0.80534 0.81863 1.90859 1.41318 1.76526 1.41066 1.47584 1.49736 1.17192 1.21155 1.21995 0.90735 1.01421 0.87325 1.21941 0.96415 0.99275 0.98890 1.21366 0.99362 0.98119 0.94681 1.19445 0.92311 0.95484 0.94382 0.96662 1.21319 1.32298 1.01084 1.00242 0.93194 1.25647 0.96631 0.99120 0.95708 1.69996 1.43234 1.36548 1.08124 0.86035 0.79580 0.81866 0.75609 1.20531 1.22585 1.18925 1.22041 0.99666 0.91849 0.85885 1.20054 0.75192 0.78979 0.84620 1.93201 1.86562 1.82187 1.53669 1.93240 1.88392 1.36101 1.96332 1.93213 1.29328 1.96391 1.96661 0.92821 0.94004 0.87401 0.91112 0.90701 0.90717 0.88712 0.90747 0.74385 0.89201 0.88100 0.87428 0.92289 0.92095 0.92672 0.92429 0.93057 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.39 -9.00 8.46 -148.98 -1.26 -10.26 16 3 C 0.05 1.23 4.59 71.98 0.33 1.56 16 4 C 0.16 3.82 0.46 3.60 0.00 3.82 16 5 C -0.16 -4.18 7.97 71.98 0.57 -3.61 16 6 N -0.72 -17.50 4.88 -438.01 -2.14 -19.64 16 7 C 0.71 23.52 7.71 179.06 1.38 24.90 16 8 O -0.62 -25.38 12.01 -4.00 -0.05 -25.43 16 9 N -0.62 -20.38 2.97 -836.89 -2.49 -22.86 16 10 C 0.11 2.34 6.43 86.36 0.56 2.90 16 11 C -0.13 -3.00 6.08 30.67 0.19 -2.81 16 12 C -0.10 -3.31 5.11 30.62 0.16 -3.15 16 13 C 0.00 0.16 1.84 -11.46 -0.02 0.14 16 14 H 0.02 0.73 7.21 -2.39 -0.02 0.71 16 15 C -0.51 -28.24 9.15 25.60 0.23 -28.00 16 16 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 17 C 0.03 1.61 5.45 84.65 0.46 2.07 16 18 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 19 Si 0.94 48.79 24.32 68.60 1.67 50.46 16 20 H -0.28 -14.60 6.92 99.48 0.69 -13.91 16 21 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 22 H -0.26 -13.55 6.53 99.48 0.65 -12.90 16 23 C 0.13 5.43 5.09 86.36 0.44 5.87 16 24 C 0.47 9.64 2.19 71.98 0.16 9.80 16 25 F -0.17 -3.39 16.57 44.97 0.75 -2.64 16 26 F -0.16 -3.50 15.09 44.97 0.68 -2.82 16 27 F -0.17 -3.45 16.67 44.97 0.75 -2.70 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.53 7.67 -2.38 -0.02 1.51 16 32 H 0.07 2.24 6.17 -2.39 -0.01 2.23 16 33 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 34 H 0.09 2.21 7.21 -2.38 -0.02 2.20 16 35 H 0.07 2.40 6.18 -2.39 -0.01 2.38 16 36 H 0.42 7.53 5.75 -92.71 -0.53 7.00 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 1.49 5.57 -2.39 -0.01 1.48 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.05 2.49 2.35 -2.39 -0.01 2.49 16 45 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -70.65 354.18 4.33 -66.32 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.42 Total: 12.48 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 5.70 Total: 15.19 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -4.33 Total: -100.60 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.31 Total: -35.68 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.17 Total: -8.16 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.67 Total: 50.46 kcal Total: -70.65 4.33 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932319097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.377 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds