Wall clock time and date at job start Tue Mar 31 2020 21:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00015 * 2 1 4 4 C 1.52999 * 109.46864 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46992 * 60.00438 * 4 3 2 6 6 N 1.46501 * 109.46765 * 180.02562 * 4 3 2 7 7 C 1.34777 * 120.00054 * 304.38900 * 6 4 3 8 8 O 1.21589 * 120.00163 * 354.60660 * 7 6 4 9 9 N 1.34777 * 120.00327 * 174.61293 * 7 6 4 10 10 C 1.46499 * 120.00479 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.05181 * 325.03014 * 10 9 7 12 12 C 1.53872 * 110.03293 * 86.44774 * 10 9 7 13 13 C 1.54271 * 106.59601 * 119.28687 * 12 10 9 14 14 C 1.54891 * 104.19726 * 23.61059 * 13 12 10 15 15 H 1.09007 * 110.75504 * 80.55492 * 14 13 12 16 16 C 1.50695 * 110.75643 * 203.74310 * 14 13 12 17 17 H 1.07993 * 120.00147 * 118.54720 * 16 14 13 18 18 C 1.37875 * 119.99917 * 298.54564 * 16 14 13 19 19 N 1.31513 * 120.00139 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 120.00143 * 0.02562 * 18 16 14 21 21 H 1.48495 * 109.47082 * 89.99964 * 20 18 16 22 22 H 1.48502 * 109.47321 * 210.00448 * 20 18 16 23 23 H 1.48506 * 109.47074 * 329.99951 * 20 18 16 24 24 C 1.54269 * 110.03408 * 203.61791 * 10 9 7 25 25 C 1.52999 * 109.47696 * 300.00052 * 4 3 2 26 26 F 1.39899 * 109.46865 * 305.10386 * 25 4 3 27 27 F 1.39901 * 109.46927 * 65.10095 * 25 4 3 28 28 F 1.39896 * 109.47252 * 185.10004 * 25 4 3 29 29 H 1.09002 * 109.46901 * 59.99953 * 1 2 3 30 30 H 1.08995 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47294 * 300.00049 * 1 2 3 32 32 H 1.08997 * 109.46923 * 59.99905 * 3 2 1 33 33 H 1.09000 * 109.47157 * 299.99798 * 3 2 1 34 34 H 1.09001 * 109.46859 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47307 * 299.99223 * 5 4 3 36 36 H 1.09000 * 109.47398 * 59.99616 * 5 4 3 37 37 H 0.97002 * 120.00322 * 124.39039 * 6 4 3 38 38 H 0.97008 * 119.99885 * 359.97438 * 9 7 6 39 39 H 1.09002 * 110.03360 * 238.56617 * 12 10 9 40 40 H 1.08999 * 110.03150 * 359.95363 * 12 10 9 41 41 H 1.09003 * 110.48292 * 142.28793 * 13 12 10 42 42 H 1.08997 * 110.48883 * 264.92923 * 13 12 10 43 43 H 0.96996 * 120.00101 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.48591 * 335.78386 * 24 10 9 45 45 H 1.09005 * 110.48348 * 98.42315 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4252 -1.2483 6 7 4.1313 2.5230 0.0013 7 6 3.8036 3.4070 -0.9618 8 8 3.0909 3.0638 -1.8852 9 7 4.2659 4.6716 -0.9016 10 6 3.9093 5.6327 -1.9482 11 1 3.8420 5.1279 -2.9120 12 6 2.5672 6.3055 -1.6107 13 6 2.8517 7.8164 -1.4826 14 6 4.1376 8.0330 -2.3186 15 1 3.9014 8.0987 -3.3807 16 6 4.8715 9.2665 -1.8595 17 1 5.8743 9.1836 -1.4674 18 6 4.2627 10.5009 -1.9401 19 7 4.9034 11.5775 -1.5400 20 14 2.5279 10.6443 -2.6178 21 1 1.5504 10.5112 -1.5079 22 1 2.3590 11.9676 -3.2701 23 1 2.2951 9.5680 -3.6142 24 6 4.9624 6.7580 -2.0134 25 6 3.9865 0.4256 1.2502 26 9 3.4747 1.0564 2.3891 27 9 3.5131 -0.8896 1.1930 28 9 5.3841 0.4159 1.3108 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 5.0740 0.3395 -1.2481 35 1 3.5441 -0.5706 -1.2484 36 1 3.6661 0.9660 -2.1385 37 1 4.7618 2.7730 0.6948 38 1 4.8343 4.9456 -0.1648 39 1 1.8487 6.1275 -2.4107 40 1 2.1809 5.9164 -0.6687 41 1 2.0262 8.3963 -1.8954 42 1 3.0244 8.0851 -0.4405 43 1 4.4752 12.4460 -1.5971 44 1 5.4760 6.8558 -1.0570 45 1 5.6773 6.5655 -2.8135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932328424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:12 Heat of formation + Delta-G solvation = -248.693511 kcal Electronic energy + Delta-G solvation = -31236.490901 eV Core-core repulsion = 26452.366126 eV Total energy + Delta-G solvation = -4784.124775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.24318 -48.74642 -48.66156 -41.62475 -39.61023 -38.71202 -36.75617 -35.32860 -34.16080 -32.29944 -30.13366 -28.97895 -28.55205 -27.55730 -26.40686 -25.49859 -23.29333 -21.70427 -21.18696 -21.02730 -20.04505 -19.59522 -19.51351 -18.82164 -18.31076 -17.49788 -17.13989 -16.92659 -16.76132 -16.60986 -15.88257 -15.73567 -15.57308 -15.46372 -15.36183 -15.11054 -14.90246 -14.84550 -14.79517 -14.77960 -14.15816 -14.05393 -14.02029 -13.96699 -13.40627 -13.11476 -12.83631 -12.79041 -12.59398 -12.49619 -12.32416 -12.22712 -11.79514 -11.60166 -11.49657 -11.23997 -11.18182 -11.01213 -10.71044 -10.67448 -10.54146 -9.91654 -8.26401 -6.28893 1.13143 1.34925 1.39182 1.48622 1.56026 1.97768 2.36527 2.41436 2.62933 2.90558 2.98387 3.09977 3.33300 3.57502 3.74806 3.83604 3.92971 4.13335 4.25008 4.43317 4.50934 4.56285 4.59257 4.64301 4.65673 4.69347 4.75045 4.84370 4.92786 4.97522 5.01089 5.09384 5.14789 5.15945 5.24863 5.44809 5.64313 5.67063 5.79056 5.84226 5.99447 6.35019 6.78247 6.92667 7.36978 7.45314 8.90269 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.002646 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.344512 B =10580.522729 C =11138.293895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.048 3.952 4 C 0.165 3.835 5 C -0.159 4.159 6 N -0.729 5.729 7 C 0.714 3.286 8 O -0.607 6.607 9 N -0.721 5.721 10 C 0.170 3.830 11 H 0.085 0.915 12 C -0.121 4.121 13 C -0.128 4.128 14 C 0.006 3.994 15 H 0.032 0.968 16 C -0.508 4.508 17 H 0.038 0.962 18 C 0.012 3.988 19 N -0.952 5.952 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.301 1.301 23 H -0.245 1.245 24 C -0.101 4.101 25 C 0.461 3.539 26 F -0.180 7.180 27 F -0.161 7.161 28 F -0.176 7.176 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.416 0.584 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.070 0.930 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -26.444 5.588 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.030 4.030 4 C 0.075 3.925 5 C -0.217 4.217 6 N -0.389 5.389 7 C 0.414 3.586 8 O -0.487 6.487 9 N -0.375 5.375 10 C 0.065 3.935 11 H 0.103 0.897 12 C -0.160 4.160 13 C -0.166 4.166 14 C -0.013 4.013 15 H 0.050 0.950 16 C -0.546 4.546 17 H 0.056 0.944 18 C -0.184 4.184 19 N -0.593 5.593 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.228 1.228 23 H -0.169 1.169 24 C -0.139 4.139 25 C 0.406 3.594 26 F -0.161 7.161 27 F -0.143 7.143 28 F -0.158 7.158 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.254 0.746 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.381 -26.760 4.806 27.927 hybrid contribution -0.079 1.259 0.788 1.488 sum -6.460 -25.500 5.594 26.894 Atomic orbital electron populations 1.22946 0.78808 1.04266 1.00759 1.87827 1.21861 1.25945 1.95680 1.22874 0.90207 0.86549 1.03417 1.20996 0.94449 0.83385 0.93641 1.22211 1.02542 1.01082 0.95876 1.44708 1.50262 1.11875 1.32100 1.15795 0.80106 0.80796 0.81877 1.90870 1.43240 1.78693 1.35869 1.45278 1.54705 1.08448 1.29074 1.21418 0.93954 0.87844 0.90303 0.89699 1.22491 0.97232 0.94534 1.01769 1.22686 0.97952 0.95354 1.00588 1.20043 0.92869 0.93009 0.95419 0.95001 1.21299 1.01128 0.91450 1.40755 0.94354 1.25820 1.01778 0.95504 0.95325 1.70045 1.39897 0.99314 1.50065 0.85953 0.80676 0.76893 0.79779 1.19361 1.22822 1.16907 1.22433 0.96787 0.92755 1.01951 1.20261 0.75157 0.79040 0.84972 1.93202 1.86892 1.81988 1.54014 1.93237 1.88114 1.36534 1.96372 1.93208 1.29450 1.96396 1.96705 0.93523 0.87550 0.93271 0.91889 0.89708 0.90574 0.89304 0.89689 0.74649 0.75413 0.91492 0.91239 0.94145 0.92483 0.92740 0.91171 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.39 -7.63 8.44 -148.98 -1.26 -8.89 16 3 C 0.05 0.95 4.49 71.98 0.32 1.28 16 4 C 0.16 3.10 0.46 3.60 0.00 3.10 16 5 C -0.16 -3.00 8.07 71.98 0.58 -2.42 16 6 N -0.73 -13.15 5.00 -438.01 -2.19 -15.34 16 7 C 0.71 16.79 7.96 179.05 1.43 18.21 16 8 O -0.61 -17.81 12.26 -4.00 -0.05 -17.86 16 9 N -0.72 -16.50 5.00 -454.34 -2.27 -18.77 16 10 C 0.17 4.87 3.22 45.72 0.15 5.02 16 11 H 0.08 2.53 7.61 -2.38 -0.02 2.51 16 12 C -0.12 -3.73 6.59 31.32 0.21 -3.52 16 13 C -0.13 -4.89 5.07 31.67 0.16 -4.73 16 14 C 0.01 0.25 2.30 -10.25 -0.02 0.22 16 15 H 0.03 1.39 7.37 -2.38 -0.02 1.37 16 16 C -0.51 -27.41 9.12 25.60 0.23 -27.18 16 17 H 0.04 2.27 8.03 -2.91 -0.02 2.25 16 18 C 0.01 0.70 5.46 84.65 0.46 1.16 16 19 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 20 Si 0.94 43.71 24.46 68.60 1.68 45.39 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.25 -10.54 6.48 99.48 0.64 -9.89 16 24 C -0.10 -3.39 5.94 31.67 0.19 -3.20 16 25 C 0.46 8.36 2.21 71.98 0.16 8.52 16 26 F -0.18 -3.34 16.58 44.97 0.75 -2.60 16 27 F -0.16 -3.18 15.08 44.97 0.68 -2.50 16 28 F -0.18 -3.06 16.59 44.97 0.75 -2.31 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 1.21 7.68 -2.39 -0.02 1.19 16 33 H 0.08 2.02 6.04 -2.39 -0.01 2.00 16 34 H 0.08 1.29 7.94 -2.39 -0.02 1.27 16 35 H 0.09 1.59 7.22 -2.39 -0.02 1.57 16 36 H 0.08 1.94 6.31 -2.39 -0.02 1.93 16 37 H 0.42 5.65 8.23 -92.71 -0.76 4.89 16 38 H 0.41 7.57 8.36 -92.70 -0.78 6.79 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.97 7.92 -2.39 -0.02 1.96 16 41 H 0.04 1.59 4.90 -2.39 -0.01 1.57 16 42 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.07 2.32 7.63 -2.39 -0.02 2.30 16 45 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -65.57 362.26 2.94 -62.64 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.56 Total: 20.25 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.11 Total: -1.90 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.16 Total: -92.22 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.31 Total: -26.74 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 2.17 Total: -7.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.68 Total: 45.39 kcal Total: -65.57 2.94 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932328424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.058 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds