Wall clock time and date at job start Tue Mar 31 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00114 * 2 1 4 4 C 1.53000 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46844 * 300.00029 * 4 3 2 6 6 N 1.46495 * 109.47362 * 180.02562 * 4 3 2 7 7 C 1.34773 * 120.00191 * 64.14919 * 6 4 3 8 8 O 1.21586 * 120.00198 * 354.45666 * 7 6 4 9 9 N 1.34781 * 120.00126 * 174.46351 * 7 6 4 10 10 C 1.46493 * 120.00071 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.02194 * 325.06568 * 10 9 7 12 12 C 1.54271 * 110.03404 * 86.44931 * 10 9 7 13 13 C 1.54893 * 104.30905 * 95.65533 * 12 10 9 14 14 C 1.55229 * 102.58696 * 37.93856 * 13 12 10 15 15 H 1.08997 * 110.47535 * 80.77671 * 14 13 12 16 16 C 1.50704 * 110.46564 * 203.39312 * 14 13 12 17 17 H 1.07998 * 120.00571 * 114.80746 * 16 14 13 18 18 C 1.37877 * 119.99835 * 294.80396 * 16 14 13 19 19 N 1.31512 * 120.00271 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46893 * 60.00503 * 20 18 16 22 22 H 1.48510 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47554 * 300.00024 * 20 18 16 24 24 C 1.53872 * 110.07506 * 203.63917 * 10 9 7 25 25 C 1.53000 * 109.47332 * 59.99747 * 4 3 2 26 26 F 1.39901 * 109.47573 * 184.26774 * 25 4 3 27 27 F 1.39901 * 109.47328 * 304.27099 * 25 4 3 28 28 F 1.39904 * 109.46885 * 64.26659 * 25 4 3 29 29 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47195 * 299.99847 * 1 2 3 31 31 H 1.09001 * 109.47624 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47307 * 60.00303 * 3 2 1 33 33 H 1.08999 * 109.47295 * 300.00266 * 3 2 1 34 34 H 1.08999 * 109.47182 * 299.99492 * 5 4 3 35 35 H 1.09001 * 109.47492 * 60.00228 * 5 4 3 36 36 H 1.09010 * 109.47056 * 179.97438 * 5 4 3 37 37 H 0.97009 * 119.99770 * 244.15000 * 6 4 3 38 38 H 0.97006 * 119.99845 * 359.97438 * 9 7 6 39 39 H 1.08995 * 110.49054 * 214.40461 * 12 10 9 40 40 H 1.08999 * 110.48503 * 336.91445 * 12 10 9 41 41 H 1.09008 * 110.75201 * 156.32547 * 13 12 10 42 42 H 1.08998 * 110.75969 * 279.69156 * 13 12 10 43 43 H 0.97004 * 120.00351 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.03100 * 359.97438 * 24 10 9 45 45 H 1.09002 * 110.02980 * 121.40654 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9873 0.4251 1.2483 6 7 4.1312 2.5229 0.0000 7 6 3.9408 3.3449 1.0509 8 8 3.1936 3.0165 1.9521 9 7 4.5786 4.5311 1.1030 10 6 4.3712 5.4248 2.2450 11 1 3.3423 5.3485 2.5966 12 6 5.3467 5.0622 3.3838 13 6 6.5396 6.0309 3.1890 14 6 5.8398 7.3457 2.7519 15 1 5.4505 7.8773 3.6202 16 6 6.7952 8.2202 1.9814 17 1 6.6115 8.4328 0.9386 18 6 7.9038 8.7489 2.6077 19 7 8.1279 8.4898 3.8774 20 14 9.0884 9.8323 1.6524 21 1 8.3652 11.0228 1.1379 22 1 10.1894 10.2711 2.5473 23 1 9.6521 9.0648 0.5130 24 6 4.6848 6.8767 1.8433 25 6 3.9864 0.4256 -1.2502 26 9 5.3709 0.2301 -1.2028 27 9 3.3417 -0.8150 -1.3003 28 9 3.6590 1.1676 -2.3901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8463 -0.8899 34 1 3.6661 0.9659 2.1385 35 1 3.5441 -0.5707 1.2483 36 1 5.0740 0.3387 1.2476 37 1 4.6629 2.8175 -0.7561 38 1 5.1750 4.7931 0.3841 39 1 4.8778 5.2249 4.3542 40 1 5.6761 4.0275 3.2890 41 1 7.0804 6.1708 4.1250 42 1 7.2069 5.6695 2.4065 43 1 8.9081 8.8615 4.3180 44 1 4.9919 6.9169 0.7983 45 1 3.8079 7.5050 1.9997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932328425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:15 Heat of formation + Delta-G solvation = -234.052726 kcal Electronic energy + Delta-G solvation = -31249.977360 eV Core-core repulsion = 26466.487457 eV Total energy + Delta-G solvation = -4783.489903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.36223 -47.88071 -47.76220 -40.49565 -38.46937 -37.35373 -35.64366 -33.75084 -32.30487 -30.93200 -28.19430 -27.76332 -27.09238 -26.60826 -25.58775 -23.90436 -22.22600 -20.53496 -19.57169 -19.42554 -18.88047 -18.66240 -18.59643 -17.29507 -16.66682 -16.57838 -16.19740 -15.81705 -15.24937 -15.10076 -14.69795 -14.63302 -14.57381 -14.24674 -14.22170 -14.09172 -13.96934 -13.89607 -13.81678 -13.18777 -13.09445 -12.81749 -12.44732 -12.28838 -11.90769 -11.75498 -11.72377 -11.45919 -11.06775 -11.03565 -10.87108 -10.60415 -10.44874 -10.09902 -9.98554 -9.77481 -9.60445 -9.52710 -9.25930 -8.86368 -8.62337 -8.38238 -6.04195 -4.07568 2.13850 2.48479 3.05355 3.28553 3.33801 3.34315 3.35877 3.53372 3.81637 3.94479 4.28076 4.40608 4.46904 4.62180 5.03192 5.11356 5.18503 5.27299 5.41085 5.41394 5.45396 5.51196 5.56826 5.62389 5.77544 6.02923 6.10447 6.26082 6.30432 6.49011 6.60861 6.68597 6.75731 6.82233 6.88765 6.93842 7.22252 7.32537 7.66694 7.82011 7.98064 8.02136 8.39221 8.59347 8.94741 9.56627 11.05133 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.002641 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.328158 B =10598.515046 C =11209.319852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.046 3.954 4 C 0.167 3.833 5 C -0.168 4.168 6 N -0.743 5.743 7 C 0.711 3.289 8 O -0.585 6.585 9 N -0.722 5.722 10 C 0.158 3.842 11 H 0.077 0.923 12 C -0.136 4.136 13 C -0.100 4.100 14 C 0.049 3.951 15 H 0.033 0.967 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.123 4.123 25 C 0.454 3.546 26 F -0.178 7.178 27 F -0.157 7.157 28 F -0.182 7.182 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.403 0.597 38 H 0.398 0.602 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 -16.897 -9.325 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.032 4.032 4 C 0.077 3.923 5 C -0.225 4.225 6 N -0.403 5.403 7 C 0.412 3.588 8 O -0.463 6.463 9 N -0.376 5.376 10 C 0.054 3.946 11 H 0.095 0.905 12 C -0.175 4.175 13 C -0.138 4.138 14 C 0.030 3.970 15 H 0.051 0.949 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.161 4.161 25 C 0.399 3.601 26 F -0.159 7.159 27 F -0.138 7.138 28 F -0.163 7.163 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.021 -17.313 -8.336 22.665 hybrid contribution 1.228 0.997 -1.552 2.216 sum -10.792 -16.316 -9.888 21.919 Atomic orbital electron populations 1.22745 0.80292 1.02904 1.00248 1.87869 1.20243 1.26297 1.95601 1.22980 0.90247 0.86219 1.03780 1.20968 0.94218 0.83554 0.93530 1.22305 1.02245 1.01078 0.96921 1.44918 1.58336 1.14196 1.22809 1.15805 0.80874 0.80518 0.81628 1.90854 1.41423 1.75230 1.38805 1.45532 1.48566 1.17589 1.25880 1.21710 0.99234 0.88978 0.84666 0.90492 1.22857 0.98126 0.99350 0.97177 1.22518 0.95103 0.95082 1.01085 1.19518 0.90688 0.92766 0.94028 0.94871 1.21120 1.07757 1.30007 0.96523 0.92798 1.24978 0.97840 0.96226 0.94833 1.69943 1.28100 1.44676 1.09869 0.86720 0.80742 0.81031 0.79829 1.20350 1.21360 1.20353 1.22620 1.00231 0.91965 1.01271 1.20437 0.75318 0.79242 0.85146 1.93210 1.30820 1.95313 1.96545 1.93253 1.81158 1.42888 1.96506 1.93188 1.92364 1.76661 1.54101 0.89317 0.93668 0.94068 0.88405 0.92355 0.87667 0.89842 0.91228 0.76117 0.76785 0.91991 0.93106 0.91515 0.93530 0.92982 0.91996 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.10 8.09 -35.23 -0.29 -4.39 16 3 C 0.05 0.51 4.70 37.16 0.17 0.68 16 4 C 0.17 1.86 0.46 -131.82 -0.06 1.80 16 5 C -0.17 -1.92 7.94 37.16 0.30 -1.63 16 6 N -0.74 -8.33 4.99 -52.42 -0.26 -8.60 16 7 C 0.71 10.02 7.96 -86.92 -0.69 9.32 16 8 O -0.58 -9.71 12.26 5.29 0.06 -9.64 16 9 N -0.72 -10.32 5.05 -57.58 -0.29 -10.61 16 10 C 0.16 2.66 3.22 -66.81 -0.22 2.45 16 11 H 0.08 1.32 7.61 -51.93 -0.39 0.92 16 12 C -0.14 -2.52 6.52 -25.07 -0.16 -2.68 16 13 C -0.10 -2.19 5.77 -24.55 -0.14 -2.33 16 14 C 0.05 1.13 2.73 -89.93 -0.25 0.88 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -13.37 8.47 -34.44 -0.29 -13.66 16 17 H 0.05 1.37 7.54 -52.49 -0.40 0.97 16 18 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 19 N -0.89 -24.79 12.30 55.43 0.68 -24.11 16 20 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.12 -2.28 6.13 -25.62 -0.16 -2.44 16 25 C 0.45 4.92 2.21 37.16 0.08 5.00 16 26 F -0.18 -1.96 16.61 2.25 0.04 -1.93 16 27 F -0.16 -1.80 15.00 2.25 0.03 -1.76 16 28 F -0.18 -1.93 16.60 2.25 0.04 -1.90 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 1.24 6.29 -51.93 -0.33 0.91 16 33 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 34 H 0.10 1.41 6.06 -51.93 -0.31 1.09 16 35 H 0.08 0.89 7.46 -51.93 -0.39 0.50 16 36 H 0.07 0.77 7.70 -51.92 -0.40 0.37 16 37 H 0.40 3.76 8.27 -40.82 -0.34 3.42 16 38 H 0.40 5.04 8.32 -40.82 -0.34 4.70 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.07 1.63 7.57 -51.92 -0.39 1.23 16 42 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -28.77 369.31 -6.41 -35.18 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.58 Total: 6.19 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.40 Total: 0.38 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.13 Total: -43.31 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.22 Total: -14.03 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.77 -6.41 -35.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932328425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.870 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds