Wall clock time and date at job start Tue Mar 31 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00114 * 2 1 4 4 C 1.53000 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46844 * 300.00029 * 4 3 2 6 6 N 1.46495 * 109.47362 * 180.02562 * 4 3 2 7 7 C 1.34773 * 120.00191 * 64.14919 * 6 4 3 8 8 O 1.21586 * 120.00198 * 354.45666 * 7 6 4 9 9 N 1.34781 * 120.00126 * 174.46351 * 7 6 4 10 10 C 1.46493 * 120.00071 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.02194 * 325.06568 * 10 9 7 12 12 C 1.54271 * 110.03404 * 86.44931 * 10 9 7 13 13 C 1.54893 * 104.30905 * 95.65533 * 12 10 9 14 14 C 1.55229 * 102.58696 * 37.93856 * 13 12 10 15 15 H 1.08997 * 110.47535 * 80.77671 * 14 13 12 16 16 C 1.50704 * 110.46564 * 203.39312 * 14 13 12 17 17 H 1.07998 * 120.00571 * 114.80746 * 16 14 13 18 18 C 1.37877 * 119.99835 * 294.80396 * 16 14 13 19 19 N 1.31512 * 120.00271 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46893 * 60.00503 * 20 18 16 22 22 H 1.48510 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47554 * 300.00024 * 20 18 16 24 24 C 1.53872 * 110.07506 * 203.63917 * 10 9 7 25 25 C 1.53000 * 109.47332 * 59.99747 * 4 3 2 26 26 F 1.39901 * 109.47573 * 184.26774 * 25 4 3 27 27 F 1.39901 * 109.47328 * 304.27099 * 25 4 3 28 28 F 1.39904 * 109.46885 * 64.26659 * 25 4 3 29 29 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47195 * 299.99847 * 1 2 3 31 31 H 1.09001 * 109.47624 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47307 * 60.00303 * 3 2 1 33 33 H 1.08999 * 109.47295 * 300.00266 * 3 2 1 34 34 H 1.08999 * 109.47182 * 299.99492 * 5 4 3 35 35 H 1.09001 * 109.47492 * 60.00228 * 5 4 3 36 36 H 1.09010 * 109.47056 * 179.97438 * 5 4 3 37 37 H 0.97009 * 119.99770 * 244.15000 * 6 4 3 38 38 H 0.97006 * 119.99845 * 359.97438 * 9 7 6 39 39 H 1.08995 * 110.49054 * 214.40461 * 12 10 9 40 40 H 1.08999 * 110.48503 * 336.91445 * 12 10 9 41 41 H 1.09008 * 110.75201 * 156.32547 * 13 12 10 42 42 H 1.08998 * 110.75969 * 279.69156 * 13 12 10 43 43 H 0.97004 * 120.00351 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.03100 * 359.97438 * 24 10 9 45 45 H 1.09002 * 110.02980 * 121.40654 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9873 0.4251 1.2483 6 7 4.1312 2.5229 0.0000 7 6 3.9408 3.3449 1.0509 8 8 3.1936 3.0165 1.9521 9 7 4.5786 4.5311 1.1030 10 6 4.3712 5.4248 2.2450 11 1 3.3423 5.3485 2.5966 12 6 5.3467 5.0622 3.3838 13 6 6.5396 6.0309 3.1890 14 6 5.8398 7.3457 2.7519 15 1 5.4505 7.8773 3.6202 16 6 6.7952 8.2202 1.9814 17 1 6.6115 8.4328 0.9386 18 6 7.9038 8.7489 2.6077 19 7 8.1279 8.4898 3.8774 20 14 9.0884 9.8323 1.6524 21 1 8.3652 11.0228 1.1379 22 1 10.1894 10.2711 2.5473 23 1 9.6521 9.0648 0.5130 24 6 4.6848 6.8767 1.8433 25 6 3.9864 0.4256 -1.2502 26 9 5.3709 0.2301 -1.2028 27 9 3.3417 -0.8150 -1.3003 28 9 3.6590 1.1676 -2.3901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8463 -0.8899 34 1 3.6661 0.9659 2.1385 35 1 3.5441 -0.5707 1.2483 36 1 5.0740 0.3387 1.2476 37 1 4.6629 2.8175 -0.7561 38 1 5.1750 4.7931 0.3841 39 1 4.8778 5.2249 4.3542 40 1 5.6761 4.0275 3.2890 41 1 7.0804 6.1708 4.1250 42 1 7.2069 5.6695 2.4065 43 1 8.9081 8.8615 4.3180 44 1 4.9919 6.9169 0.7983 45 1 3.8079 7.5050 1.9997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932328425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:15 Heat of formation + Delta-G solvation = -252.063378 kcal Electronic energy + Delta-G solvation = -31250.758360 eV Core-core repulsion = 26466.487457 eV Total energy + Delta-G solvation = -4784.270903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.22976 -48.73871 -48.63813 -41.59858 -39.53354 -38.61288 -36.69936 -35.24288 -33.96454 -32.10066 -29.90245 -28.59854 -28.53896 -27.54595 -26.36580 -25.74397 -23.31012 -21.66460 -20.96622 -20.93629 -19.99525 -19.56577 -19.51090 -18.47950 -18.30840 -17.44239 -17.25960 -16.61105 -16.59010 -16.45315 -16.21614 -15.63494 -15.58174 -15.44212 -15.26589 -15.10636 -14.91306 -14.81634 -14.76009 -14.57063 -14.06280 -13.99334 -13.89204 -13.53682 -13.22504 -12.92116 -12.76088 -12.71375 -12.55803 -12.44768 -12.36785 -12.28734 -12.09438 -11.62818 -11.40109 -11.14964 -11.03831 -10.78685 -10.68333 -10.54368 -10.41152 -9.86403 -8.07580 -6.16683 1.15448 1.45177 1.45576 1.52700 1.57794 1.99172 2.45257 2.46823 2.66025 2.92827 2.99196 3.23854 3.34604 3.58564 3.76327 3.98756 4.07628 4.25739 4.27741 4.45123 4.52364 4.57507 4.60285 4.64800 4.75427 4.80171 4.86419 4.96747 5.05078 5.09416 5.15235 5.17340 5.23111 5.29661 5.46948 5.69441 5.70671 5.84895 5.95365 6.02749 6.04337 6.41620 6.93669 6.96671 7.47870 7.50867 9.00964 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.002641 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.328158 B =10598.515046 C =11209.319852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.165 3.835 5 C -0.162 4.162 6 N -0.730 5.730 7 C 0.714 3.286 8 O -0.608 6.608 9 N -0.718 5.718 10 C 0.173 3.827 11 H 0.081 0.919 12 C -0.125 4.125 13 C -0.090 4.090 14 C 0.039 3.961 15 H 0.000 1.000 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.269 1.269 24 C -0.110 4.110 25 C 0.460 3.540 26 F -0.178 7.178 27 F -0.159 7.159 28 F -0.178 7.178 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.415 0.585 38 H 0.408 0.592 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.258 0.742 44 H 0.072 0.928 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 -17.624 -11.278 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.027 4.027 4 C 0.075 3.925 5 C -0.220 4.220 6 N -0.390 5.390 7 C 0.415 3.585 8 O -0.488 6.488 9 N -0.373 5.373 10 C 0.068 3.932 11 H 0.099 0.901 12 C -0.164 4.164 13 C -0.128 4.128 14 C 0.020 3.980 15 H 0.018 0.982 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.194 1.194 24 C -0.148 4.148 25 C 0.405 3.595 26 F -0.159 7.159 27 F -0.140 7.140 28 F -0.160 7.160 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.244 0.756 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.631 -18.053 -10.340 24.339 hybrid contribution 1.376 1.187 -0.933 2.043 sum -11.255 -16.866 -11.274 23.200 Atomic orbital electron populations 1.22946 0.78854 1.04222 1.00789 1.87850 1.21841 1.25965 1.95662 1.22847 0.90016 0.86480 1.03318 1.21002 0.94549 0.83260 0.93653 1.22222 1.02375 1.01194 0.96236 1.44715 1.58002 1.13880 1.22390 1.15784 0.80460 0.80452 0.81824 1.90857 1.42363 1.75680 1.39903 1.45296 1.48976 1.17516 1.25480 1.21347 0.98739 0.88335 0.84772 0.90053 1.22737 0.96935 0.98578 0.98142 1.22279 0.95848 0.95656 0.99011 1.19500 0.92097 0.92738 0.93646 0.98158 1.21548 1.08029 1.29907 0.96934 0.92272 1.25751 0.99686 0.97721 0.95633 1.70087 1.28612 1.45966 1.11347 0.85745 0.78593 0.79495 0.78592 1.19736 1.21699 1.19439 1.22425 0.98693 0.93076 1.00636 1.20271 0.75210 0.79066 0.84946 1.93215 1.30844 1.95311 1.96542 1.93251 1.81225 1.43038 1.96502 1.93198 1.92337 1.76556 1.53895 0.87685 0.93549 0.93102 0.90031 0.91574 0.89521 0.89175 0.90978 0.74773 0.75623 0.91993 0.92515 0.94796 0.94278 0.93310 0.90972 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.39 -7.84 8.09 -148.98 -1.21 -9.05 16 3 C 0.05 1.06 4.70 71.98 0.34 1.40 16 4 C 0.16 3.40 0.46 3.61 0.00 3.40 16 5 C -0.16 -3.52 7.94 71.98 0.57 -2.95 16 6 N -0.73 -14.91 4.99 -438.02 -2.19 -17.10 16 7 C 0.71 18.82 7.96 179.05 1.42 20.24 16 8 O -0.61 -19.39 12.26 -3.99 -0.05 -19.44 16 9 N -0.72 -19.05 5.05 -454.36 -2.29 -21.34 16 10 C 0.17 5.56 3.22 45.72 0.15 5.71 16 11 H 0.08 2.63 7.61 -2.39 -0.02 2.61 16 12 C -0.13 -4.55 6.52 31.67 0.21 -4.34 16 13 C -0.09 -3.99 5.77 32.01 0.18 -3.81 16 14 C 0.04 1.82 2.73 -10.35 -0.03 1.79 16 15 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 16 C -0.53 -27.21 8.47 25.60 0.22 -27.00 16 17 H 0.06 2.93 7.54 -2.91 -0.02 2.91 16 18 C 0.01 0.58 5.35 84.65 0.45 1.03 16 19 N -0.92 -52.59 12.30 21.45 0.26 -52.33 16 20 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C -0.11 -3.95 6.13 31.32 0.19 -3.76 16 25 C 0.46 9.04 2.21 71.98 0.16 9.20 16 26 F -0.18 -3.57 16.61 44.97 0.75 -2.82 16 27 F -0.16 -3.34 15.00 44.97 0.67 -2.66 16 28 F -0.18 -3.38 16.60 44.97 0.75 -2.64 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.98 6.29 -2.39 -0.02 1.96 16 33 H 0.07 1.24 7.91 -2.39 -0.02 1.22 16 34 H 0.09 2.26 6.06 -2.39 -0.01 2.24 16 35 H 0.09 1.81 7.46 -2.39 -0.02 1.79 16 36 H 0.07 1.50 7.70 -2.38 -0.02 1.48 16 37 H 0.41 6.69 8.27 -92.70 -0.77 5.92 16 38 H 0.41 9.31 8.32 -92.70 -0.77 8.54 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 41 H 0.03 1.70 7.57 -2.38 -0.02 1.68 16 42 H 0.04 1.76 8.05 -2.39 -0.02 1.74 16 43 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.07 2.44 7.12 -2.39 -0.02 2.42 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -61.43 369.31 3.34 -58.10 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.50 Total: 22.45 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.12 Total: 2.56 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -4.22 Total: -90.77 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.25 Total: -28.49 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.17 Total: -8.12 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -61.43 3.34 -58.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932328425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.968 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds