Wall clock time and date at job start Tue Mar 31 2020 21:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 C 1.53005 * 109.46959 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47093 * 59.99816 * 4 3 2 6 6 N 1.46503 * 109.47088 * 179.97438 * 4 3 2 7 7 C 1.34776 * 120.00042 * 185.54691 * 6 4 3 8 8 O 1.21583 * 120.00305 * 4.40953 * 7 6 4 9 9 N 1.34773 * 119.99705 * 184.41136 * 7 6 4 10 10 C 1.46928 * 120.63585 * 354.44844 * 9 7 6 11 11 C 1.53625 * 108.54334 * 126.36475 * 10 9 7 12 12 C 1.53045 * 109.23760 * 54.86148 * 11 10 9 13 13 C 1.50703 * 109.44551 * 178.49473 * 12 11 10 14 14 H 1.07999 * 119.99951 * 120.06493 * 13 12 11 15 15 C 1.37879 * 120.00250 * 300.05887 * 13 12 11 16 16 N 1.31519 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00366 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46642 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46971 * 120.00107 * 17 15 13 20 20 H 1.48490 * 109.47307 * 240.00465 * 17 15 13 21 21 C 1.53031 * 109.53783 * 298.50599 * 12 11 10 22 22 C 1.46926 * 120.62995 * 174.72685 * 9 7 6 23 23 C 1.52995 * 109.47018 * 299.99601 * 4 3 2 24 24 F 1.39897 * 109.47312 * 61.95141 * 23 4 3 25 25 F 1.39906 * 109.46894 * 181.94645 * 23 4 3 26 26 F 1.39899 * 109.47364 * 301.94579 * 23 4 3 27 27 H 1.09004 * 109.46881 * 60.00663 * 1 2 3 28 28 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47289 * 300.00307 * 1 2 3 30 30 H 1.08990 * 109.47412 * 59.99732 * 3 2 1 31 31 H 1.09005 * 109.46759 * 299.99203 * 3 2 1 32 32 H 1.08997 * 109.47357 * 59.99953 * 5 4 3 33 33 H 1.08997 * 109.46874 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47044 * 299.99645 * 5 4 3 35 35 H 0.96997 * 119.99706 * 5.54843 * 6 4 3 36 36 H 1.08992 * 109.59011 * 246.20417 * 10 9 7 37 37 H 1.09004 * 109.57993 * 6.63063 * 10 9 7 38 38 H 1.08998 * 109.64005 * 294.86830 * 11 10 9 39 39 H 1.09004 * 109.43194 * 174.72617 * 11 10 9 40 40 H 1.09005 * 109.45929 * 58.53381 * 12 11 10 41 41 H 0.96994 * 120.00353 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.50285 * 301.41580 * 21 12 11 43 43 H 1.09001 * 109.52159 * 181.33114 * 21 12 11 44 44 H 1.09002 * 109.58906 * 353.37646 * 22 9 7 45 45 H 1.09000 * 109.58845 * 113.65297 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4250 -1.2483 6 7 4.1314 2.5230 0.0000 7 6 5.4668 2.6660 -0.1124 8 8 6.1696 1.6906 -0.2937 9 7 6.0232 3.8903 -0.0237 10 6 5.1808 5.0902 0.0735 11 6 5.6171 5.8947 1.3075 12 6 7.1167 6.1858 1.2153 13 6 7.5425 7.0065 2.4054 14 1 8.2924 6.6262 3.0832 15 6 6.9749 8.2431 2.6287 16 7 6.0615 8.7061 1.8034 17 14 7.5022 9.2602 4.1041 18 1 8.5360 8.5201 4.8714 19 1 8.0633 10.5538 3.6385 20 1 6.3268 9.5152 4.9750 21 6 7.8940 4.8676 1.2008 22 6 7.4836 4.0510 -0.0287 23 6 3.9864 0.4257 1.2502 24 9 3.4533 -0.8676 1.2281 25 9 5.3834 0.3538 1.2734 26 9 3.5349 1.0968 2.3917 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.6662 0.9657 -2.1385 33 1 5.0740 0.3394 -1.2480 34 1 3.5441 -0.5707 -1.2482 35 1 3.5648 3.3061 0.0805 36 1 5.3037 5.6967 -0.8237 37 1 4.1365 4.7959 0.1780 38 1 5.4129 5.3196 2.2106 39 1 5.0655 6.8342 1.3414 40 1 7.3236 6.7396 0.2995 41 1 5.6619 9.5758 1.9607 42 1 7.6684 4.3021 2.1049 43 1 8.9631 5.0756 1.1590 44 1 7.9592 3.0709 0.0082 45 1 7.7908 4.5722 -0.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932335271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:27 Heat of formation + Delta-G solvation = -215.372439 kcal Electronic energy + Delta-G solvation = -32292.370727 eV Core-core repulsion = 27509.690863 eV Total energy + Delta-G solvation = -4782.679865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.81996 -47.36484 -47.18340 -40.37407 -38.60060 -37.17818 -35.55061 -33.64768 -31.99789 -30.48665 -29.93452 -27.79869 -26.51068 -26.07087 -25.63334 -23.21511 -22.45012 -21.24131 -20.17880 -19.11295 -18.45532 -18.10201 -17.75839 -17.68921 -16.68889 -16.32929 -15.97828 -15.58008 -15.27783 -14.91646 -14.54991 -14.32470 -14.09177 -13.89666 -13.72869 -13.71428 -13.42044 -13.36220 -13.28996 -13.20593 -12.94162 -12.75410 -12.54938 -12.52712 -12.11024 -11.94790 -11.80906 -11.58829 -11.34364 -11.23174 -10.98456 -10.63627 -10.41278 -10.17905 -10.12008 -9.69493 -9.53924 -9.31218 -9.18668 -8.97055 -8.41289 -7.99551 -6.06515 -4.12095 2.37667 2.78993 3.25375 3.34032 3.35539 3.38617 3.44173 3.86558 3.90638 4.14412 4.33440 4.38891 4.65347 4.75064 4.93286 5.00163 5.02972 5.14271 5.22705 5.34404 5.42280 5.54949 5.69602 5.72910 5.89293 6.01832 6.12490 6.17663 6.20757 6.29712 6.43924 6.62484 6.63817 6.75090 6.94522 7.08222 7.14902 7.32329 7.63787 7.88701 7.99569 8.12530 8.37406 8.77100 8.91621 9.53264 10.98986 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003195 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.148275 B = 8760.696217 C = 9135.859339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.055 3.945 4 C 0.164 3.836 5 C -0.169 4.169 6 N -0.740 5.740 7 C 0.706 3.294 8 O -0.576 6.576 9 N -0.613 5.613 10 C 0.109 3.891 11 C -0.124 4.124 12 C 0.049 3.951 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.125 4.125 22 C 0.131 3.869 23 C 0.440 3.560 24 F -0.173 7.173 25 F -0.156 7.156 26 F -0.188 7.188 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.104 0.896 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -14.004 -6.576 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.022 4.022 4 C 0.073 3.927 5 C -0.226 4.226 6 N -0.402 5.402 7 C 0.408 3.592 8 O -0.454 6.454 9 N -0.348 5.348 10 C -0.014 4.014 11 C -0.162 4.162 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.163 4.163 22 C 0.008 3.992 23 C 0.384 3.616 24 F -0.154 7.154 25 F -0.137 7.137 26 F -0.169 7.169 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.122 0.878 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.105 -14.717 -6.693 19.614 hybrid contribution -0.389 1.316 1.207 1.828 sum -11.494 -13.401 -5.486 18.488 Atomic orbital electron populations 1.22804 0.80010 1.03282 1.00301 1.87945 1.20354 1.25382 1.95508 1.22585 0.89938 0.86836 1.02859 1.20928 0.93235 0.84532 0.93985 1.22352 1.06199 1.00176 0.93894 1.45103 1.07182 1.06518 1.81389 1.15761 0.81078 0.84202 0.78124 1.90863 1.60765 1.37263 1.56533 1.47425 1.07913 1.04147 1.75360 1.22030 0.91914 0.85931 1.01520 1.22108 1.01413 0.99781 0.92929 1.18622 0.90386 0.90383 0.97520 1.21257 1.22023 1.01473 1.10046 0.92625 1.24958 0.95053 0.97580 0.96408 1.69837 1.27543 1.18928 1.36881 0.86560 0.78530 0.80176 0.82896 1.19812 1.21064 1.21086 1.22033 1.00208 0.98269 0.95794 1.21613 0.77570 1.00904 0.99076 1.20936 0.76633 0.78476 0.85564 1.93184 1.86244 1.39405 1.96603 1.93343 1.27784 1.96081 1.96523 1.93154 1.89143 1.80362 1.54285 0.93709 0.89065 0.93698 0.91297 0.90415 0.90933 0.87675 0.90234 0.75630 0.91654 0.92729 0.94158 0.87806 0.95411 0.93071 0.92920 0.92009 0.90116 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.37 -3.76 8.32 -35.23 -0.29 -4.05 16 3 C 0.06 0.53 4.79 37.16 0.18 0.71 16 4 C 0.16 2.06 0.64 -131.81 -0.08 1.98 16 5 C -0.17 -2.06 7.93 37.16 0.29 -1.77 16 6 N -0.74 -9.99 4.97 -52.41 -0.26 -10.25 16 7 C 0.71 11.98 7.46 -86.92 -0.65 11.33 16 8 O -0.58 -11.03 10.61 5.29 0.06 -10.98 16 9 N -0.61 -10.62 2.97 -178.23 -0.53 -11.14 16 10 C 0.11 1.81 6.46 -3.48 -0.02 1.79 16 11 C -0.12 -2.62 5.17 -26.38 -0.14 -2.76 16 12 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 13 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -23.93 11.30 55.43 0.63 -23.31 16 17 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.51 5.30 -26.62 -0.14 -2.65 16 22 C 0.13 2.34 6.41 -3.71 -0.02 2.31 16 23 C 0.44 6.68 2.32 37.16 0.09 6.77 16 24 F -0.17 -2.53 15.05 2.25 0.03 -2.50 16 25 F -0.16 -2.84 13.42 2.25 0.03 -2.81 16 26 F -0.19 -2.94 16.67 2.25 0.04 -2.90 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.58 5.48 -51.93 -0.28 1.30 16 34 H 0.08 0.91 7.29 -51.93 -0.38 0.53 16 35 H 0.40 4.62 5.94 -40.82 -0.24 4.38 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.74 5.56 -51.93 -0.29 0.46 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 2.45 6.03 -51.93 -0.31 2.14 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -29.87 358.26 -6.35 -36.22 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.47 Total: 2.85 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 0.04 Total: 7.83 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.16 Total: -44.70 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.24 Total: -15.03 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.10 Total: -8.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.87 -6.35 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932335271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.149 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds