Wall clock time and date at job start Tue Mar 31 2020 21:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 C 1.53005 * 109.46959 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47093 * 59.99816 * 4 3 2 6 6 N 1.46503 * 109.47088 * 179.97438 * 4 3 2 7 7 C 1.34776 * 120.00042 * 185.54691 * 6 4 3 8 8 O 1.21583 * 120.00305 * 4.40953 * 7 6 4 9 9 N 1.34773 * 119.99705 * 184.41136 * 7 6 4 10 10 C 1.46928 * 120.63585 * 354.44844 * 9 7 6 11 11 C 1.53625 * 108.54334 * 126.36475 * 10 9 7 12 12 C 1.53045 * 109.23760 * 54.86148 * 11 10 9 13 13 C 1.50703 * 109.44551 * 178.49473 * 12 11 10 14 14 H 1.07999 * 119.99951 * 120.06493 * 13 12 11 15 15 C 1.37879 * 120.00250 * 300.05887 * 13 12 11 16 16 N 1.31519 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00366 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46642 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46971 * 120.00107 * 17 15 13 20 20 H 1.48490 * 109.47307 * 240.00465 * 17 15 13 21 21 C 1.53031 * 109.53783 * 298.50599 * 12 11 10 22 22 C 1.46926 * 120.62995 * 174.72685 * 9 7 6 23 23 C 1.52995 * 109.47018 * 299.99601 * 4 3 2 24 24 F 1.39897 * 109.47312 * 61.95141 * 23 4 3 25 25 F 1.39906 * 109.46894 * 181.94645 * 23 4 3 26 26 F 1.39899 * 109.47364 * 301.94579 * 23 4 3 27 27 H 1.09004 * 109.46881 * 60.00663 * 1 2 3 28 28 H 1.09007 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47289 * 300.00307 * 1 2 3 30 30 H 1.08990 * 109.47412 * 59.99732 * 3 2 1 31 31 H 1.09005 * 109.46759 * 299.99203 * 3 2 1 32 32 H 1.08997 * 109.47357 * 59.99953 * 5 4 3 33 33 H 1.08997 * 109.46874 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47044 * 299.99645 * 5 4 3 35 35 H 0.96997 * 119.99706 * 5.54843 * 6 4 3 36 36 H 1.08992 * 109.59011 * 246.20417 * 10 9 7 37 37 H 1.09004 * 109.57993 * 6.63063 * 10 9 7 38 38 H 1.08998 * 109.64005 * 294.86830 * 11 10 9 39 39 H 1.09004 * 109.43194 * 174.72617 * 11 10 9 40 40 H 1.09005 * 109.45929 * 58.53381 * 12 11 10 41 41 H 0.96994 * 120.00353 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.50285 * 301.41580 * 21 12 11 43 43 H 1.09001 * 109.52159 * 181.33114 * 21 12 11 44 44 H 1.09002 * 109.58906 * 353.37646 * 22 9 7 45 45 H 1.09000 * 109.58845 * 113.65297 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4250 -1.2483 6 7 4.1314 2.5230 0.0000 7 6 5.4668 2.6660 -0.1124 8 8 6.1696 1.6906 -0.2937 9 7 6.0232 3.8903 -0.0237 10 6 5.1808 5.0902 0.0735 11 6 5.6171 5.8947 1.3075 12 6 7.1167 6.1858 1.2153 13 6 7.5425 7.0065 2.4054 14 1 8.2924 6.6262 3.0832 15 6 6.9749 8.2431 2.6287 16 7 6.0615 8.7061 1.8034 17 14 7.5022 9.2602 4.1041 18 1 8.5360 8.5201 4.8714 19 1 8.0633 10.5538 3.6385 20 1 6.3268 9.5152 4.9750 21 6 7.8940 4.8676 1.2008 22 6 7.4836 4.0510 -0.0287 23 6 3.9864 0.4257 1.2502 24 9 3.4533 -0.8676 1.2281 25 9 5.3834 0.3538 1.2734 26 9 3.5349 1.0968 2.3917 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.6662 0.9657 -2.1385 33 1 5.0740 0.3394 -1.2480 34 1 3.5441 -0.5707 -1.2482 35 1 3.5648 3.3061 0.0805 36 1 5.3037 5.6967 -0.8237 37 1 4.1365 4.7959 0.1780 38 1 5.4129 5.3196 2.2106 39 1 5.0655 6.8342 1.3414 40 1 7.3236 6.7396 0.2995 41 1 5.6619 9.5758 1.9607 42 1 7.6684 4.3021 2.1049 43 1 8.9631 5.0756 1.1590 44 1 7.9592 3.0709 0.0082 45 1 7.7908 4.5722 -0.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932335271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:26 Heat of formation + Delta-G solvation = -233.575687 kcal Electronic energy + Delta-G solvation = -32293.160079 eV Core-core repulsion = 27509.690863 eV Total energy + Delta-G solvation = -4783.469217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.03016 -48.56463 -48.44354 -41.64801 -39.50888 -38.50949 -36.68901 -35.37628 -33.51070 -31.99475 -31.37001 -28.51021 -27.96119 -27.31839 -26.46344 -24.83388 -23.98432 -22.49050 -21.52067 -20.53310 -19.67590 -19.32546 -19.09371 -18.85177 -18.28034 -17.42158 -16.83320 -16.63154 -16.52491 -16.32708 -16.13833 -15.43399 -15.29015 -15.14759 -14.99562 -14.93892 -14.84936 -14.66617 -14.65371 -14.41405 -14.27364 -14.22033 -14.06166 -13.41129 -13.29479 -13.12521 -13.01244 -12.82983 -12.77844 -12.58055 -12.42510 -12.14641 -12.08476 -11.95442 -11.44528 -11.00591 -10.97751 -10.73381 -10.72915 -10.48921 -10.38083 -9.45434 -8.07180 -6.19322 1.26012 1.39989 1.43929 1.53435 1.66745 2.11032 2.44799 2.52012 2.71449 2.80087 3.12641 3.19439 3.35248 3.64406 3.79298 4.08644 4.22368 4.28989 4.31768 4.37371 4.48191 4.55911 4.58500 4.61937 4.64025 4.69500 4.75125 4.90169 4.92992 5.00425 5.16169 5.18838 5.22624 5.29565 5.44887 5.50644 5.67034 5.91019 6.02014 6.05327 6.15532 6.41801 6.84889 6.89812 7.46594 7.48074 8.96074 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003195 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.148275 B = 8760.696217 C = 9135.859339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.059 3.941 4 C 0.165 3.835 5 C -0.161 4.161 6 N -0.727 5.727 7 C 0.704 3.296 8 O -0.598 6.598 9 N -0.617 5.617 10 C 0.119 3.881 11 C -0.115 4.115 12 C 0.047 3.953 13 C -0.534 4.534 14 H 0.043 0.957 15 C 0.020 3.980 16 N -0.909 5.909 17 Si 0.945 3.055 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.115 4.115 22 C 0.138 3.862 23 C 0.430 3.570 24 F -0.171 7.171 25 F -0.179 7.179 26 F -0.193 7.193 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.081 0.919 40 H 0.007 0.993 41 H 0.261 0.739 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -14.145 -7.386 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.018 4.018 4 C 0.075 3.925 5 C -0.219 4.219 6 N -0.389 5.389 7 C 0.406 3.594 8 O -0.477 6.477 9 N -0.353 5.353 10 C -0.003 4.003 11 C -0.153 4.153 12 C 0.028 3.972 13 C -0.572 4.572 14 H 0.062 0.938 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.153 4.153 22 C 0.015 3.985 23 C 0.374 3.626 24 F -0.153 7.153 25 F -0.160 7.160 26 F -0.175 7.175 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.257 0.743 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.900 -14.860 -7.503 21.060 hybrid contribution 0.156 1.309 1.500 1.996 sum -12.744 -13.552 -6.003 19.547 Atomic orbital electron populations 1.22998 0.78244 1.04266 1.01397 1.87911 1.22240 1.25616 1.95745 1.22617 0.87293 0.87213 1.04667 1.21113 0.95411 0.83474 0.92502 1.22262 1.04222 1.00914 0.94484 1.44939 1.06070 1.07571 1.80330 1.15877 0.82067 0.83530 0.77906 1.90870 1.61717 1.37823 1.57329 1.47405 1.07667 1.04569 1.75675 1.21909 0.93618 0.85356 0.99413 1.21862 0.99709 0.99211 0.94559 1.18591 0.92207 0.91077 0.95299 1.21575 1.22094 1.02459 1.11042 0.93826 1.25577 0.95209 0.98508 0.98636 1.69930 1.27925 1.19173 1.37842 0.85701 0.78126 0.78766 0.80204 1.19984 1.20628 1.20633 1.21877 1.00048 0.96982 0.96409 1.21466 0.78331 1.00434 0.98250 1.21474 0.75645 0.78959 0.86529 1.93180 1.86035 1.39422 1.96637 1.93297 1.29797 1.96223 1.96676 1.93138 1.89045 1.80423 1.54854 0.91951 0.88271 0.93218 0.90652 0.87390 0.88910 0.90575 0.89616 0.74251 0.90842 0.89086 0.95723 0.90087 0.97442 0.92930 0.94500 0.91778 0.90153 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.90 8.32 -148.98 -1.24 -8.14 16 3 C 0.06 0.94 4.79 71.98 0.34 1.29 16 4 C 0.17 3.82 0.64 3.61 0.00 3.82 16 5 C -0.16 -3.64 7.93 71.98 0.57 -3.07 16 6 N -0.73 -17.94 4.97 -438.00 -2.18 -20.11 16 7 C 0.70 22.86 7.46 179.06 1.34 24.19 16 8 O -0.60 -22.52 10.61 -3.98 -0.04 -22.56 16 9 N -0.62 -20.55 2.97 -836.07 -2.48 -23.03 16 10 C 0.12 3.78 6.46 86.51 0.56 4.34 16 11 C -0.11 -4.85 5.17 30.82 0.16 -4.69 16 12 C 0.05 2.19 2.06 -11.51 -0.02 2.17 16 13 C -0.53 -28.48 8.56 25.60 0.22 -28.27 16 14 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 15 C 0.02 1.05 5.30 84.65 0.45 1.50 16 16 N -0.91 -48.90 11.30 21.45 0.24 -48.65 16 17 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 22 C 0.14 4.84 6.41 86.36 0.55 5.39 16 23 C 0.43 12.67 2.32 71.98 0.17 12.83 16 24 F -0.17 -4.87 15.05 44.97 0.68 -4.20 16 25 F -0.18 -6.50 13.42 44.97 0.60 -5.90 16 26 F -0.19 -5.85 16.67 44.97 0.75 -5.10 16 27 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 1.11 7.75 -2.39 -0.02 1.09 16 31 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.23 5.48 -2.39 -0.01 2.21 16 34 H 0.09 1.82 7.29 -2.39 -0.02 1.80 16 35 H 0.42 8.13 5.94 -92.71 -0.55 7.58 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.09 2.20 5.56 -2.38 -0.01 2.19 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 3.83 6.03 -2.39 -0.01 3.82 16 40 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.08 2.85 7.04 -2.39 -0.02 2.83 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.18 358.26 4.58 -60.60 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.47 Total: 16.04 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.75 Total: 16.52 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -4.41 Total: -91.80 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.28 Total: -30.70 kcal Atomic # 9 Polarization: -17.23 SS G_CDS: 2.03 Total: -15.20 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.18 4.58 -60.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932335271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.972 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds