Wall clock time and date at job start Tue Mar 31 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00014 * 2 1 4 4 C 1.53007 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47226 * 300.00186 * 4 3 2 6 6 N 1.46492 * 109.46843 * 180.02562 * 4 3 2 7 7 C 1.34779 * 120.00155 * 173.62443 * 6 4 3 8 8 O 1.21595 * 119.99323 * 4.85787 * 7 6 4 9 9 N 1.34775 * 120.00311 * 184.57930 * 7 6 4 10 10 C 1.46928 * 120.62935 * 174.98138 * 9 7 6 11 11 C 1.52757 * 109.01221 * 233.58578 * 10 9 7 12 12 C 1.53044 * 109.38160 * 305.59262 * 11 10 9 13 13 C 1.50696 * 109.44726 * 181.24910 * 12 11 10 14 14 H 1.07999 * 120.00292 * 239.93051 * 13 12 11 15 15 C 1.37878 * 119.99938 * 59.93981 * 13 12 11 16 16 N 1.31514 * 120.00021 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00221 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47082 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47435 * 119.99813 * 17 15 13 20 20 H 1.48504 * 109.47423 * 240.00108 * 17 15 13 21 21 C 1.53042 * 109.53695 * 61.23748 * 12 11 10 22 22 C 1.46920 * 120.63100 * 355.26703 * 9 7 6 23 23 C 1.52999 * 109.46964 * 60.00273 * 4 3 2 24 24 F 1.39897 * 109.47038 * 185.99731 * 23 4 3 25 25 F 1.39900 * 109.47113 * 305.99849 * 23 4 3 26 26 F 1.39898 * 109.47148 * 66.00025 * 23 4 3 27 27 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46639 * 299.99576 * 1 2 3 29 29 H 1.08995 * 109.47311 * 59.99571 * 1 2 3 30 30 H 1.08999 * 109.46819 * 60.01046 * 3 2 1 31 31 H 1.08996 * 109.47348 * 300.00709 * 3 2 1 32 32 H 1.08994 * 109.47101 * 300.00291 * 5 4 3 33 33 H 1.09005 * 109.47180 * 59.99940 * 5 4 3 34 34 H 1.08997 * 109.46952 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00319 * 353.62467 * 6 4 3 36 36 H 1.09001 * 109.58596 * 353.42375 * 10 9 7 37 37 H 1.09004 * 109.58270 * 113.84418 * 10 9 7 38 38 H 1.08999 * 109.56540 * 185.55432 * 11 10 9 39 39 H 1.09004 * 109.38616 * 65.51394 * 11 10 9 40 40 H 1.08996 * 109.45742 * 301.21386 * 12 11 10 41 41 H 0.97006 * 120.00190 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.48974 * 178.68605 * 21 12 11 43 43 H 1.08991 * 109.52725 * 58.60398 * 21 12 11 44 44 H 1.09006 * 109.58325 * 246.15604 * 22 9 7 45 45 H 1.09000 * 109.58686 * 6.43297 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2482 6 7 4.1313 2.5229 0.0000 7 6 5.4652 2.6668 0.1292 8 8 6.1826 1.6854 0.1564 9 7 6.0043 3.8984 0.2226 10 6 7.4419 4.0693 0.4735 11 6 7.6307 4.9794 1.6858 12 6 6.8715 6.2890 1.4608 13 6 7.0819 7.2003 2.6425 14 1 6.2354 7.5358 3.2232 15 6 8.3551 7.6058 2.9822 16 7 9.3860 7.1971 2.2753 17 14 8.6159 8.7359 4.4465 18 1 7.3048 9.0494 5.0696 19 1 9.4892 8.0633 5.4416 20 1 9.2609 9.9941 3.9922 21 6 5.3780 5.9943 1.3038 22 6 5.1646 5.0958 0.0816 23 6 3.9864 0.4257 -1.2502 24 9 5.3648 0.1955 -1.1841 25 9 3.3122 -0.7981 -1.3212 26 9 3.6947 1.1856 -2.3880 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.6662 0.9658 2.1384 33 1 3.5441 -0.5707 1.2482 34 1 5.0740 0.3387 1.2475 35 1 3.5659 3.3057 -0.0926 36 1 7.8959 3.0986 0.6728 37 1 7.9134 4.5235 -0.3980 38 1 8.6912 5.1921 1.8208 39 1 7.2432 4.4824 2.5752 40 1 7.2430 6.7736 0.5579 41 1 10.2819 7.4821 2.5145 42 1 4.8351 6.9297 1.1669 43 1 5.0108 5.4878 2.1962 44 1 5.4467 5.6355 -0.8225 45 1 4.1168 4.8020 0.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932335272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:29 Heat of formation + Delta-G solvation = -215.347783 kcal Electronic energy + Delta-G solvation = -32105.260494 eV Core-core repulsion = 27322.581698 eV Total energy + Delta-G solvation = -4782.678796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.84154 -47.39946 -47.18049 -40.38627 -38.62036 -37.20309 -35.57008 -33.68486 -31.80229 -30.86421 -29.78441 -27.82161 -26.53894 -26.09066 -25.64912 -23.22308 -22.47288 -21.23946 -20.15480 -19.13320 -18.49822 -18.12326 -17.75072 -17.71507 -16.71132 -16.36193 -16.00533 -15.62979 -15.18539 -14.95637 -14.58398 -14.30858 -14.15084 -13.94735 -13.75887 -13.72589 -13.47112 -13.36501 -13.30355 -13.15478 -12.93419 -12.68754 -12.62301 -12.50137 -12.15946 -12.00121 -11.81143 -11.74743 -11.24993 -11.14145 -10.98102 -10.66543 -10.46281 -10.14133 -10.10226 -9.69607 -9.60566 -9.32877 -9.23381 -8.94261 -8.40300 -7.99334 -6.04838 -4.11731 2.36601 2.76448 3.25658 3.34478 3.35882 3.37319 3.40457 3.83482 3.90199 4.12052 4.30005 4.38674 4.61565 4.72088 4.92017 4.96837 5.01019 5.10311 5.24111 5.25383 5.32341 5.54465 5.68438 5.69561 5.75599 5.97847 6.17152 6.21041 6.28510 6.37607 6.46166 6.56112 6.60743 6.71715 6.91767 6.99232 7.17864 7.39470 7.67455 7.89242 8.01811 8.12938 8.36753 8.77246 8.91770 9.53676 11.00551 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002916 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.237253 B = 9599.363821 C =10120.699993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.057 3.943 4 C 0.164 3.836 5 C -0.168 4.168 6 N -0.741 5.741 7 C 0.703 3.297 8 O -0.571 6.571 9 N -0.612 5.612 10 C 0.128 3.872 11 C -0.124 4.124 12 C 0.049 3.951 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.123 4.123 22 C 0.112 3.888 23 C 0.439 3.561 24 F -0.152 7.152 25 F -0.172 7.172 26 F -0.191 7.191 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.403 0.597 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 -11.612 -5.914 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.021 4.021 4 C 0.073 3.927 5 C -0.225 4.225 6 N -0.403 5.403 7 C 0.405 3.595 8 O -0.449 6.449 9 N -0.348 5.348 10 C 0.006 3.994 11 C -0.163 4.163 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.162 4.162 22 C -0.012 4.012 23 C 0.383 3.617 24 F -0.133 7.133 25 F -0.154 7.154 26 F -0.172 7.172 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.138 -12.473 -5.913 21.236 hybrid contribution -0.336 1.304 0.488 1.432 sum -16.475 -11.170 -5.425 20.630 Atomic orbital electron populations 1.22803 0.80079 1.03300 1.00235 1.87970 1.20282 1.25291 1.95480 1.22560 0.89939 0.86878 1.02716 1.20944 0.93182 0.84554 0.94013 1.22296 1.05878 1.00299 0.94066 1.45132 1.07329 1.06452 1.81366 1.15817 0.81115 0.84408 0.78139 1.90939 1.59606 1.36776 1.57539 1.47459 1.10353 1.03134 1.73818 1.21732 0.77088 1.00995 0.99592 1.21966 1.05285 0.95314 0.93696 1.18625 0.88117 0.92817 0.97361 1.21204 0.92543 1.28345 1.13086 0.92721 1.24966 0.96212 0.96207 0.96598 1.69849 0.98722 1.44809 1.39407 0.86569 0.78152 0.80649 0.82799 1.19885 1.21038 1.21066 1.22014 1.01536 0.97376 0.95226 1.21755 0.92392 0.86672 1.00341 1.20933 0.76824 0.78507 0.85430 1.93353 1.29285 1.94545 1.96143 1.93199 1.80233 1.45397 1.96566 1.93131 1.93362 1.76055 1.54660 0.89058 0.93686 0.93799 0.90352 0.91571 0.90690 0.90127 0.88059 0.75867 0.90369 0.92407 0.87703 0.94356 0.95432 0.92959 0.92108 0.92851 0.91636 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.60 8.04 -35.23 -0.28 -3.88 16 3 C 0.06 0.51 4.84 37.16 0.18 0.69 16 4 C 0.16 2.00 0.64 -131.82 -0.08 1.92 16 5 C -0.17 -2.11 7.92 37.16 0.29 -1.81 16 6 N -0.74 -9.59 4.83 -52.42 -0.25 -9.85 16 7 C 0.70 11.92 7.67 -86.92 -0.67 11.25 16 8 O -0.57 -11.27 10.55 5.28 0.06 -11.21 16 9 N -0.61 -10.57 2.98 -178.76 -0.53 -11.11 16 10 C 0.13 2.49 6.39 -3.93 -0.03 2.46 16 11 C -0.12 -2.77 5.14 -26.83 -0.14 -2.91 16 12 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 13 C -0.51 -13.30 8.56 -34.44 -0.29 -13.60 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.34 11.30 55.43 0.63 -23.71 16 17 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C -0.12 -2.24 5.30 -26.61 -0.14 -2.38 16 22 C 0.11 1.68 6.43 -3.72 -0.02 1.65 16 23 C 0.44 6.34 2.29 37.16 0.09 6.43 16 24 F -0.15 -2.67 13.26 2.25 0.03 -2.64 16 25 F -0.17 -2.41 14.99 2.25 0.03 -2.38 16 26 F -0.19 -2.74 16.85 2.25 0.04 -2.70 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.94 7.50 -51.93 -0.39 0.55 16 34 H 0.10 1.58 5.58 -51.93 -0.29 1.29 16 35 H 0.40 4.16 5.94 -40.82 -0.24 3.92 16 36 H 0.08 1.56 7.04 -51.93 -0.37 1.20 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.65 5.56 -51.93 -0.29 0.36 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -30.22 358.46 -6.38 -36.60 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.49 Total: 2.41 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.01 Total: 7.49 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.16 Total: -44.66 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.23 Total: -15.10 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.10 Total: -7.72 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.22 -6.38 -36.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932335272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.747 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds