Wall clock time and date at job start Tue Mar 31 2020 21:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00014 * 2 1 4 4 C 1.53007 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47226 * 300.00186 * 4 3 2 6 6 N 1.46492 * 109.46843 * 180.02562 * 4 3 2 7 7 C 1.34779 * 120.00155 * 173.62443 * 6 4 3 8 8 O 1.21595 * 119.99323 * 4.85787 * 7 6 4 9 9 N 1.34775 * 120.00311 * 184.57930 * 7 6 4 10 10 C 1.46928 * 120.62935 * 174.98138 * 9 7 6 11 11 C 1.52757 * 109.01221 * 233.58578 * 10 9 7 12 12 C 1.53044 * 109.38160 * 305.59262 * 11 10 9 13 13 C 1.50696 * 109.44726 * 181.24910 * 12 11 10 14 14 H 1.07999 * 120.00292 * 239.93051 * 13 12 11 15 15 C 1.37878 * 119.99938 * 59.93981 * 13 12 11 16 16 N 1.31514 * 120.00021 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00221 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47082 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47435 * 119.99813 * 17 15 13 20 20 H 1.48504 * 109.47423 * 240.00108 * 17 15 13 21 21 C 1.53042 * 109.53695 * 61.23748 * 12 11 10 22 22 C 1.46920 * 120.63100 * 355.26703 * 9 7 6 23 23 C 1.52999 * 109.46964 * 60.00273 * 4 3 2 24 24 F 1.39897 * 109.47038 * 185.99731 * 23 4 3 25 25 F 1.39900 * 109.47113 * 305.99849 * 23 4 3 26 26 F 1.39898 * 109.47148 * 66.00025 * 23 4 3 27 27 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46639 * 299.99576 * 1 2 3 29 29 H 1.08995 * 109.47311 * 59.99571 * 1 2 3 30 30 H 1.08999 * 109.46819 * 60.01046 * 3 2 1 31 31 H 1.08996 * 109.47348 * 300.00709 * 3 2 1 32 32 H 1.08994 * 109.47101 * 300.00291 * 5 4 3 33 33 H 1.09005 * 109.47180 * 59.99940 * 5 4 3 34 34 H 1.08997 * 109.46952 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00319 * 353.62467 * 6 4 3 36 36 H 1.09001 * 109.58596 * 353.42375 * 10 9 7 37 37 H 1.09004 * 109.58270 * 113.84418 * 10 9 7 38 38 H 1.08999 * 109.56540 * 185.55432 * 11 10 9 39 39 H 1.09004 * 109.38616 * 65.51394 * 11 10 9 40 40 H 1.08996 * 109.45742 * 301.21386 * 12 11 10 41 41 H 0.97006 * 120.00190 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.48974 * 178.68605 * 21 12 11 43 43 H 1.08991 * 109.52725 * 58.60398 * 21 12 11 44 44 H 1.09006 * 109.58325 * 246.15604 * 22 9 7 45 45 H 1.09000 * 109.58686 * 6.43297 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2482 6 7 4.1313 2.5229 0.0000 7 6 5.4652 2.6668 0.1292 8 8 6.1826 1.6854 0.1564 9 7 6.0043 3.8984 0.2226 10 6 7.4419 4.0693 0.4735 11 6 7.6307 4.9794 1.6858 12 6 6.8715 6.2890 1.4608 13 6 7.0819 7.2003 2.6425 14 1 6.2354 7.5358 3.2232 15 6 8.3551 7.6058 2.9822 16 7 9.3860 7.1971 2.2753 17 14 8.6159 8.7359 4.4465 18 1 7.3048 9.0494 5.0696 19 1 9.4892 8.0633 5.4416 20 1 9.2609 9.9941 3.9922 21 6 5.3780 5.9943 1.3038 22 6 5.1646 5.0958 0.0816 23 6 3.9864 0.4257 -1.2502 24 9 5.3648 0.1955 -1.1841 25 9 3.3122 -0.7981 -1.3212 26 9 3.6947 1.1856 -2.3880 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.6662 0.9658 2.1384 33 1 3.5441 -0.5707 1.2482 34 1 5.0740 0.3387 1.2475 35 1 3.5659 3.3057 -0.0926 36 1 7.8959 3.0986 0.6728 37 1 7.9134 4.5235 -0.3980 38 1 8.6912 5.1921 1.8208 39 1 7.2432 4.4824 2.5752 40 1 7.2430 6.7736 0.5579 41 1 10.2819 7.4821 2.5145 42 1 4.8351 6.9297 1.1669 43 1 5.0108 5.4878 2.1962 44 1 5.4467 5.6355 -0.8225 45 1 4.1168 4.8020 0.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932335272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:28 Heat of formation + Delta-G solvation = -234.059534 kcal Electronic energy + Delta-G solvation = -32106.071896 eV Core-core repulsion = 27322.581698 eV Total energy + Delta-G solvation = -4783.490198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.97981 -48.51632 -48.37888 -41.65403 -39.50048 -38.51251 -36.68938 -35.40994 -33.31464 -32.34712 -31.21366 -28.51912 -27.97935 -27.30480 -26.43176 -24.83274 -23.96671 -22.48792 -21.46302 -20.53941 -19.67992 -19.27537 -19.04929 -18.82131 -18.29888 -17.40701 -16.80407 -16.60143 -16.46773 -16.34543 -16.21144 -15.41318 -15.23708 -15.15136 -14.93278 -14.88214 -14.84467 -14.62508 -14.55255 -14.53507 -14.22333 -14.12513 -14.00184 -13.50044 -13.37169 -13.10148 -12.98943 -12.83348 -12.74606 -12.54372 -12.40584 -12.14032 -12.06035 -11.90238 -11.40402 -11.13901 -10.88498 -10.75818 -10.70509 -10.49204 -10.38818 -9.45723 -8.05645 -6.19171 1.26284 1.41333 1.44756 1.54101 1.67600 2.12118 2.45388 2.52485 2.75088 2.82282 3.15704 3.21512 3.37478 3.66046 3.80899 4.06283 4.22844 4.31105 4.33425 4.34947 4.52431 4.55817 4.59030 4.63278 4.64605 4.69018 4.76011 4.92710 4.94838 5.00543 5.15417 5.16659 5.24384 5.28483 5.47963 5.51250 5.67148 5.92420 6.02163 6.07920 6.15653 6.40841 6.87618 6.93406 7.46803 7.49226 8.97820 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002916 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.237253 B = 9599.363821 C =10120.699993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.165 3.835 5 C -0.163 4.163 6 N -0.723 5.723 7 C 0.701 3.299 8 O -0.601 6.601 9 N -0.616 5.616 10 C 0.141 3.859 11 C -0.111 4.111 12 C 0.045 3.955 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.916 5.916 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.283 1.283 21 C -0.114 4.114 22 C 0.115 3.885 23 C 0.431 3.569 24 F -0.176 7.176 25 F -0.171 7.171 26 F -0.191 7.191 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.002 0.998 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.071 -11.252 -5.833 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.016 4.016 4 C 0.075 3.925 5 C -0.220 4.220 6 N -0.386 5.386 7 C 0.403 3.597 8 O -0.480 6.480 9 N -0.352 5.352 10 C 0.018 3.982 11 C -0.150 4.150 12 C 0.026 3.974 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.556 5.556 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.209 1.209 21 C -0.152 4.152 22 C -0.007 4.007 23 C 0.375 3.625 24 F -0.157 7.157 25 F -0.153 7.153 26 F -0.172 7.172 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.020 0.980 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.255 -12.099 -5.840 23.478 hybrid contribution 0.594 1.137 0.441 1.356 sum -18.661 -10.962 -5.399 22.306 Atomic orbital electron populations 1.22990 0.78289 1.04199 1.01414 1.87934 1.22189 1.25664 1.95741 1.22599 0.87006 0.87226 1.04782 1.21101 0.95553 0.83489 0.92402 1.22210 1.03664 1.01199 0.94948 1.44881 1.05908 1.07601 1.80177 1.15937 0.82247 0.83644 0.77872 1.90941 1.60801 1.37722 1.58581 1.47381 1.09514 1.04229 1.74060 1.21337 0.79105 0.99622 0.98122 1.21706 1.03063 0.95795 0.94431 1.18609 0.91595 0.92089 0.95108 1.21619 0.92500 1.28626 1.13903 0.92770 1.25704 0.96252 0.97702 0.99008 1.69988 0.98918 1.45872 1.40808 0.85649 0.78152 0.78813 0.79868 1.19014 1.21213 1.20893 1.21854 0.97830 0.98811 0.96750 1.21866 0.94560 0.85341 0.98965 1.21360 0.75825 0.78907 0.86377 1.93309 1.31341 1.94741 1.96300 1.93197 1.79982 1.45453 1.96619 1.93124 1.93233 1.75971 1.54886 0.88451 0.92178 0.92888 0.87709 0.90002 0.89248 0.89422 0.91369 0.74015 0.91292 0.92510 0.91045 0.95707 0.97983 0.93166 0.90750 0.93067 0.90849 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.40 -6.48 8.04 -148.98 -1.20 -7.68 16 3 C 0.06 0.87 4.84 71.98 0.35 1.22 16 4 C 0.16 3.65 0.64 3.61 0.00 3.65 16 5 C -0.16 -3.85 7.92 71.98 0.57 -3.28 16 6 N -0.72 -16.69 4.83 -438.00 -2.12 -18.81 16 7 C 0.70 22.81 7.67 179.05 1.37 24.18 16 8 O -0.60 -23.76 10.55 -4.01 -0.04 -23.81 16 9 N -0.62 -20.50 2.98 -837.74 -2.50 -22.99 16 10 C 0.14 5.59 6.39 86.22 0.55 6.15 16 11 C -0.11 -5.11 5.14 30.53 0.16 -4.95 16 12 C 0.04 2.05 2.07 -11.51 -0.02 2.02 16 13 C -0.53 -27.48 8.56 25.60 0.22 -27.26 16 14 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 15 C 0.01 0.63 5.30 84.66 0.45 1.08 16 16 N -0.92 -51.45 11.30 21.45 0.24 -51.21 16 17 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.11 -3.93 5.30 30.67 0.16 -3.76 16 22 C 0.11 3.12 6.43 86.36 0.56 3.68 16 23 C 0.43 11.91 2.29 71.98 0.16 12.07 16 24 F -0.18 -6.18 13.26 44.97 0.60 -5.58 16 25 F -0.17 -4.58 14.99 44.97 0.67 -3.91 16 26 F -0.19 -5.13 16.85 44.97 0.76 -4.38 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.93 7.96 -2.39 -0.02 0.91 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.93 7.50 -2.38 -0.02 1.91 16 34 H 0.07 2.12 5.58 -2.39 -0.01 2.11 16 35 H 0.42 6.81 5.94 -92.71 -0.55 6.26 16 36 H 0.07 2.85 7.04 -2.39 -0.02 2.83 16 37 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.07 3.77 6.03 -2.39 -0.01 3.76 16 39 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 42 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.10 1.86 5.56 -2.39 -0.01 1.85 16 Total: -1.00 -67.64 358.46 4.69 -62.95 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.47 Total: 14.64 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.78 Total: 16.29 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.37 Total: -93.01 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.24 Total: -31.49 kcal Atomic # 9 Polarization: -15.89 SS G_CDS: 2.03 Total: -13.87 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.64 4.69 -62.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932335272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.110 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds