Wall clock time and date at job start Tue Mar 31 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99844 * 2 1 4 4 C 1.53009 * 109.46766 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46912 * 60.00376 * 4 3 2 6 6 N 1.46500 * 109.47025 * 179.97438 * 4 3 2 7 7 C 1.34777 * 120.00162 * 304.53871 * 6 4 3 8 8 O 1.21583 * 120.00120 * 354.60303 * 7 6 4 9 9 N 1.34780 * 119.99984 * 174.33096 * 7 6 4 10 10 C 1.46495 * 120.00036 * 180.27334 * 9 7 6 11 11 C 1.50701 * 109.47157 * 89.99731 * 10 9 7 12 12 H 1.07997 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99907 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47065 * 60.00298 * 15 13 11 17 17 H 1.48501 * 109.46800 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47069 * 300.00262 * 15 13 11 19 19 C 1.46496 * 120.00066 * 0.27293 * 9 7 6 20 20 C 1.53000 * 109.47321 * 89.99772 * 19 9 7 21 21 C 1.52996 * 117.50019 * 243.62462 * 20 19 9 22 22 C 1.52996 * 117.49942 * 174.99878 * 20 19 9 23 23 C 1.52998 * 109.47435 * 300.00056 * 4 3 2 24 24 F 1.39897 * 109.46975 * 305.07818 * 23 4 3 25 25 F 1.39895 * 109.46941 * 65.07100 * 23 4 3 26 26 F 1.39895 * 109.47155 * 185.07290 * 23 4 3 27 27 H 1.09004 * 109.47367 * 300.00554 * 1 2 3 28 28 H 1.09006 * 109.47212 * 59.99883 * 1 2 3 29 29 H 1.09001 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47378 * 59.99889 * 3 2 1 31 31 H 1.08995 * 109.47502 * 299.99707 * 3 2 1 32 32 H 1.08996 * 109.47087 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46980 * 299.99756 * 5 4 3 34 34 H 1.09002 * 109.47555 * 59.99642 * 5 4 3 35 35 H 0.97003 * 120.00015 * 124.52939 * 6 4 3 36 36 H 1.09000 * 109.47666 * 210.00036 * 10 9 7 37 37 H 1.09006 * 109.47320 * 330.00236 * 10 9 7 38 38 H 0.96996 * 120.00305 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47385 * 210.00343 * 19 9 7 40 40 H 1.09001 * 109.47366 * 330.00283 * 19 9 7 41 41 H 1.09004 * 115.54876 * 29.32936 * 20 19 9 42 42 H 1.08999 * 117.50228 * 0.02562 * 21 20 19 43 43 H 1.09004 * 117.49870 * 145.01995 * 21 20 19 44 44 H 1.08999 * 117.50114 * 214.97838 * 22 20 19 45 45 H 1.08999 * 117.50166 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 7 4.1314 2.5229 0.0000 7 6 3.8013 3.4071 -0.9621 8 8 3.0864 3.0641 -1.8838 9 7 4.2593 4.6732 -0.8997 10 6 3.8956 5.6359 -1.9423 11 6 2.6241 6.3439 -1.5509 12 1 2.1360 6.1012 -0.6186 13 6 2.0846 7.3021 -2.3827 14 7 2.6793 7.5979 -3.5178 15 14 0.5089 8.1802 -1.8972 16 1 0.7166 8.8959 -0.6128 17 1 0.1402 9.1559 -2.9542 18 1 -0.5831 7.1862 -1.7391 19 6 5.1207 5.0866 0.2108 20 6 6.5849 4.8469 -0.1629 21 6 7.3686 3.8294 0.6685 22 6 7.6529 5.3248 0.8229 23 6 3.9865 0.4255 1.2502 24 9 3.4751 1.0567 2.3891 25 9 3.5124 -0.8894 1.1934 26 9 5.3841 0.4153 1.3105 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 5.0739 0.3394 -1.2481 33 1 3.5440 -0.5706 -1.2484 34 1 3.6661 0.9659 -2.1386 35 1 4.7634 2.7728 0.6922 36 1 4.6968 6.3658 -2.0585 37 1 3.7434 5.1104 -2.8851 38 1 2.2995 8.2717 -4.1031 39 1 4.9666 6.1461 0.4152 40 1 4.8726 4.5055 1.0990 41 1 6.8156 4.9131 -1.2261 42 1 6.8411 3.3304 1.4814 43 1 8.1152 3.2258 0.1522 44 1 8.5864 5.7051 0.4082 45 1 7.3125 5.8097 1.7378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932340071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:07 Heat of formation + Delta-G solvation = -208.105729 kcal Electronic energy + Delta-G solvation = -32381.720749 eV Core-core repulsion = 27599.355992 eV Total energy + Delta-G solvation = -4782.364757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.24398 -48.74099 -48.65387 -41.60297 -39.32730 -38.39707 -37.00375 -35.94989 -34.65243 -32.42105 -29.55659 -28.56413 -27.72953 -27.43745 -26.39967 -25.01511 -23.21854 -22.56932 -21.82000 -20.59410 -19.98694 -19.53063 -19.41778 -18.57288 -18.25153 -17.50590 -17.24857 -16.72781 -16.61758 -16.38904 -16.01505 -15.78487 -15.57207 -15.47035 -15.11219 -15.00717 -14.86674 -14.83634 -14.79231 -14.76305 -14.34133 -14.07959 -13.94643 -13.67870 -13.35461 -13.06140 -12.91419 -12.73098 -12.57671 -12.53391 -12.50312 -12.30960 -12.29597 -12.15705 -11.74736 -11.28576 -11.13030 -10.82285 -10.62238 -10.60100 -10.44675 -9.41845 -8.18606 -6.32426 1.21723 1.38865 1.41849 1.49208 1.60024 2.11690 2.36347 2.43095 2.61416 2.75870 2.97087 3.01410 3.11472 3.29393 3.58258 3.75470 3.84148 3.98360 4.10707 4.23024 4.24915 4.45498 4.49744 4.56469 4.60939 4.64522 4.67458 4.77460 4.81282 4.82358 4.96140 5.06279 5.14836 5.18459 5.26276 5.28635 5.32650 5.58525 5.75693 5.95596 6.00424 6.10040 6.75997 7.01375 7.33837 7.62764 8.87899 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.004760 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.391524 B = 5881.110537 C = 7776.752912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.162 3.838 5 C -0.156 4.156 6 N -0.728 5.728 7 C 0.710 3.290 8 O -0.613 6.613 9 N -0.608 5.608 10 C 0.282 3.718 11 C -0.539 4.539 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.142 3.858 20 C -0.192 4.192 21 C -0.170 4.170 22 C -0.157 4.157 23 C 0.466 3.534 24 F -0.179 7.179 25 F -0.158 7.158 26 F -0.172 7.172 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.024 0.976 37 H 0.003 0.997 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.530 -13.506 12.979 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.072 3.928 5 C -0.214 4.214 6 N -0.390 5.390 7 C 0.412 3.588 8 O -0.493 6.493 9 N -0.341 5.341 10 C 0.161 3.839 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.204 1.204 19 C 0.018 3.982 20 C -0.212 4.212 21 C -0.207 4.207 22 C -0.195 4.195 23 C 0.411 3.589 24 F -0.160 7.160 25 F -0.139 7.139 26 F -0.154 7.154 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.042 0.958 37 H 0.021 0.979 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.108 -13.780 12.189 19.093 hybrid contribution -0.674 1.024 0.167 1.237 sum 4.435 -12.757 12.355 18.304 Atomic orbital electron populations 1.22963 0.78899 1.04391 1.00589 1.87795 1.21831 1.25649 1.95652 1.22815 0.90711 0.86422 1.02937 1.21006 0.94145 0.83580 0.94076 1.22178 1.02556 1.00928 0.95769 1.44832 1.50267 1.11869 1.32059 1.15780 0.80155 0.80915 0.81924 1.90828 1.43331 1.78510 1.36603 1.47333 1.50898 1.08342 1.27569 1.18638 0.94438 0.85575 0.85298 1.21673 1.09747 1.20750 1.05650 0.92893 1.25764 1.00681 0.97629 0.94694 1.70034 1.41447 1.33367 1.11811 0.85552 0.79289 0.78103 0.78356 1.18714 1.20556 1.20371 1.21166 0.87249 1.01788 0.87949 1.22718 0.92859 1.07819 0.97812 1.23128 1.02970 0.92515 1.02063 1.23015 0.99084 0.96834 1.00541 1.20083 0.75259 0.78965 0.84634 1.93192 1.86947 1.82038 1.53820 1.93231 1.88098 1.36235 1.96358 1.93200 1.29103 1.96390 1.96676 0.93212 0.94169 0.86921 0.92133 0.90834 0.90341 0.88917 0.90703 0.75154 0.95785 0.97888 0.92491 0.89970 0.89741 0.89567 0.87836 0.88225 0.87936 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.83 16 2 O -0.39 -10.64 8.44 -148.98 -1.26 -11.90 16 3 C 0.05 1.51 4.49 71.99 0.32 1.83 16 4 C 0.16 4.59 0.46 3.61 0.00 4.59 16 5 C -0.16 -4.37 8.07 71.98 0.58 -3.79 16 6 N -0.73 -22.17 4.82 -438.00 -2.11 -24.28 16 7 C 0.71 28.72 7.69 179.05 1.38 30.09 16 8 O -0.61 -29.67 12.16 -3.98 -0.05 -29.72 16 9 N -0.61 -25.06 2.46 -844.21 -2.07 -27.14 16 10 C 0.28 14.72 5.16 85.63 0.44 15.16 16 11 C -0.54 -30.18 9.39 25.60 0.24 -29.94 16 12 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 13 C 0.01 0.65 5.46 84.66 0.46 1.11 16 14 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 15 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C 0.14 4.36 5.41 86.38 0.47 4.83 16 20 C -0.19 -5.05 6.01 -10.80 -0.06 -5.12 16 21 C -0.17 -3.30 9.85 30.59 0.30 -3.00 16 22 C -0.16 -3.04 10.25 30.59 0.31 -2.73 16 23 C 0.47 11.39 2.21 71.98 0.16 11.55 16 24 F -0.18 -4.35 16.58 44.97 0.75 -3.61 16 25 F -0.16 -3.91 15.08 44.97 0.68 -3.23 16 26 F -0.17 -3.83 16.59 44.97 0.75 -3.09 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.79 7.68 -2.39 -0.02 1.77 16 31 H 0.07 2.77 6.03 -2.39 -0.01 2.75 16 32 H 0.08 1.94 7.94 -2.39 -0.02 1.92 16 33 H 0.09 2.34 7.22 -2.39 -0.02 2.32 16 34 H 0.07 2.57 6.32 -2.39 -0.02 2.55 16 35 H 0.41 10.48 5.33 -92.71 -0.49 9.99 16 36 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 37 H 0.00 0.18 7.42 -2.38 -0.02 0.16 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 40 H 0.08 2.14 6.17 -2.39 -0.01 2.12 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.10 1.74 7.67 -2.39 -0.02 1.72 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.92 376.77 5.37 -61.55 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.52 Total: 23.58 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 5.85 Total: 26.43 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.90 Total: -106.12 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.31 Total: -41.61 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 2.17 Total: -9.93 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.92 5.37 -61.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932340071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.553 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds