Wall clock time and date at job start Tue Mar 31 2020 21:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 C 1.52995 * 109.46909 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47702 * 300.00144 * 4 3 2 6 6 N 1.46503 * 109.47130 * 180.02562 * 4 3 2 7 7 C 1.34776 * 119.99939 * 57.96326 * 6 4 3 8 8 O 1.21581 * 119.99971 * 5.08600 * 7 6 4 9 9 N 1.34773 * 120.00031 * 185.07730 * 7 6 4 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47022 * 90.00585 * 10 9 7 12 12 H 1.08002 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99546 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47142 * 60.00426 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47528 * 300.00166 * 15 13 11 19 19 C 1.46501 * 119.99937 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47463 * 89.99738 * 19 9 7 21 21 C 1.53001 * 117.49952 * 243.62309 * 20 19 9 22 22 C 1.52997 * 59.99980 * 252.50843 * 21 20 19 23 23 C 1.53000 * 109.47059 * 60.00203 * 4 3 2 24 24 F 1.39904 * 109.47277 * 54.72542 * 23 4 3 25 25 F 1.39895 * 109.47424 * 294.72197 * 23 4 3 26 26 F 1.39899 * 109.47147 * 174.71874 * 23 4 3 27 27 H 1.09007 * 109.46569 * 300.00132 * 1 2 3 28 28 H 1.08998 * 109.47207 * 59.99689 * 1 2 3 29 29 H 1.08994 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47093 * 60.00457 * 3 2 1 31 31 H 1.08996 * 109.47210 * 300.00223 * 3 2 1 32 32 H 1.08996 * 109.48020 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47097 * 300.00545 * 5 4 3 34 34 H 1.09005 * 109.47201 * 59.99799 * 5 4 3 35 35 H 0.97001 * 120.00283 * 237.96631 * 6 4 3 36 36 H 1.08999 * 109.47462 * 210.00471 * 10 9 7 37 37 H 1.09003 * 109.47196 * 330.00495 * 10 9 7 38 38 H 0.96998 * 119.99650 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.46885 * 209.99400 * 19 9 7 40 40 H 1.08995 * 109.47244 * 329.99292 * 19 9 7 41 41 H 1.09004 * 115.54905 * 29.32167 * 20 19 9 42 42 H 1.09004 * 117.49299 * 359.97438 * 21 20 19 43 43 H 1.08998 * 117.50200 * 145.01788 * 21 20 19 44 44 H 1.08997 * 117.49703 * 252.51180 * 22 21 20 45 45 H 1.09002 * 117.50418 * 107.48788 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2482 6 7 4.1314 2.5229 0.0000 7 6 3.8403 3.3898 0.9901 8 8 3.1578 3.0316 1.9304 9 7 4.3057 4.6535 0.9379 10 6 3.9888 5.5959 2.0138 11 6 5.0510 5.5167 3.0800 12 1 5.8794 4.8331 2.9671 13 6 4.9651 6.3170 4.1994 14 7 3.9565 7.1498 4.3366 15 14 6.2813 6.2182 5.5212 16 1 7.6003 6.5643 4.9332 17 1 5.9602 7.1736 6.6119 18 1 6.3302 4.8389 6.0692 19 6 5.1277 5.0851 -0.1954 20 6 4.2248 5.6441 -1.2968 21 6 4.2015 4.9031 -2.6352 22 6 4.9034 6.2579 -2.5230 23 6 3.9864 0.4256 -1.2502 24 9 3.4712 1.0542 -2.3890 25 9 3.5163 -0.8908 -1.1913 26 9 5.3839 0.4193 -1.3131 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 5.0741 0.3385 1.2475 33 1 3.6662 0.9658 2.1385 34 1 3.5442 -0.5707 1.2482 35 1 4.7355 2.7852 -0.7122 36 1 3.9528 6.6082 1.6113 37 1 3.0208 5.3420 2.4457 38 1 3.8960 7.7125 5.1243 39 1 5.8218 5.8588 0.1330 40 1 5.6886 4.2343 -0.5823 41 1 3.2942 6.0982 -0.9565 42 1 4.8299 4.0175 -2.7311 43 1 3.2555 4.8695 -3.1756 44 1 4.4191 7.1157 -2.9896 45 1 5.9932 6.2636 -2.5450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932340073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:10 Heat of formation + Delta-G solvation = -189.782757 kcal Electronic energy + Delta-G solvation = -32386.036792 eV Core-core repulsion = 27604.466579 eV Total energy + Delta-G solvation = -4781.570213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.16636 -47.67782 -47.57865 -40.13243 -38.17315 -37.27749 -35.66026 -34.34863 -32.67176 -30.98458 -27.79416 -27.49944 -26.50537 -26.00967 -25.34967 -23.11509 -22.33278 -21.23139 -20.67933 -19.21552 -18.70989 -18.45609 -18.19317 -16.95604 -16.49141 -16.37894 -15.98489 -15.57540 -15.11784 -14.95658 -14.71347 -14.51939 -14.43695 -14.23364 -14.04971 -13.89130 -13.73960 -13.73078 -13.54256 -13.28981 -12.94800 -12.81117 -12.40613 -12.16448 -11.89433 -11.71208 -11.51840 -11.49440 -11.44702 -11.22051 -11.13497 -10.91939 -10.62066 -10.37094 -10.12257 -9.92215 -9.76837 -9.63822 -9.20895 -9.02231 -8.44084 -7.73174 -6.05531 -4.09970 2.48573 2.83520 3.31566 3.36107 3.38727 3.46845 3.63947 3.81104 3.89136 4.06097 4.17197 4.40996 4.50635 4.74115 4.86300 4.91457 4.98021 5.13921 5.26117 5.29028 5.33973 5.37581 5.46274 5.60037 5.65778 5.73689 5.77156 5.80867 5.87124 5.94225 6.00010 6.14035 6.38688 6.43440 6.50780 6.68956 7.00350 7.30404 7.47136 7.60737 7.92051 8.21429 8.53580 8.90183 9.18912 9.55472 11.02328 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.004235 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.687881 B = 6610.190407 C = 7649.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.046 3.954 4 C 0.168 3.832 5 C -0.166 4.166 6 N -0.746 5.746 7 C 0.711 3.289 8 O -0.574 6.574 9 N -0.603 5.603 10 C 0.262 3.738 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.143 3.857 20 C -0.166 4.166 21 C -0.184 4.184 22 C -0.175 4.175 23 C 0.454 3.546 24 F -0.181 7.181 25 F -0.161 7.161 26 F -0.181 7.181 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.398 0.602 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 -10.326 -14.949 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.303 6.303 3 C -0.032 4.032 4 C 0.078 3.922 5 C -0.224 4.224 6 N -0.408 5.408 7 C 0.413 3.587 8 O -0.451 6.451 9 N -0.336 5.336 10 C 0.143 3.857 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.018 3.982 20 C -0.185 4.185 21 C -0.221 4.221 22 C -0.212 4.212 23 C 0.399 3.601 24 F -0.162 7.162 25 F -0.142 7.142 26 F -0.163 7.163 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.369 -10.576 -14.113 17.795 hybrid contribution 0.947 0.327 0.003 1.002 sum -1.422 -10.249 -14.110 17.497 Atomic orbital electron populations 1.22728 0.80446 1.02680 1.00277 1.87835 1.20144 1.26650 1.95632 1.22984 0.90339 0.85935 1.03943 1.20895 0.94204 0.84172 0.92912 1.22310 1.01856 1.00861 0.97395 1.45139 1.52934 1.12526 1.30209 1.15710 0.80566 0.80833 0.81571 1.90845 1.43712 1.76639 1.33938 1.47521 1.52728 1.09734 1.23650 1.19237 0.97542 0.86047 0.82879 1.21411 1.08813 1.22065 1.04284 0.92515 1.24903 0.95915 0.95182 0.97938 1.69914 1.30123 1.24291 1.29058 0.86577 0.81748 0.77944 0.81240 1.20306 1.21231 1.20211 1.20973 0.92256 0.99282 0.85687 1.22969 1.02317 1.03860 0.89402 1.23012 1.02418 0.95612 1.01038 1.22900 0.99864 0.96492 1.01984 1.20501 0.74978 0.79193 0.85428 1.93179 1.86766 1.82145 1.54135 1.93221 1.88172 1.36395 1.96394 1.93183 1.29914 1.96437 1.96747 0.93597 0.94184 0.89490 0.88192 0.92348 0.91645 0.87473 0.90195 0.76529 0.94760 0.93711 0.92679 0.88988 0.92295 0.87215 0.89286 0.89092 0.88917 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.18 8.45 -35.23 -0.30 -5.48 16 3 C 0.05 0.66 4.53 37.15 0.17 0.83 16 4 C 0.17 2.45 0.46 -131.82 -0.06 2.38 16 5 C -0.17 -2.48 8.03 37.15 0.30 -2.18 16 6 N -0.75 -11.53 4.86 -52.42 -0.25 -11.79 16 7 C 0.71 13.99 7.68 -86.92 -0.67 13.32 16 8 O -0.57 -13.23 12.15 5.29 0.06 -13.17 16 9 N -0.60 -12.03 2.46 -180.80 -0.44 -12.48 16 10 C 0.26 6.51 5.16 -5.19 -0.03 6.48 16 11 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 15 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.14 2.22 5.50 -4.04 -0.02 2.20 16 20 C -0.17 -2.23 6.01 -90.62 -0.54 -2.77 16 21 C -0.18 -2.04 10.18 -26.73 -0.27 -2.31 16 22 C -0.17 -1.90 10.25 -26.73 -0.27 -2.18 16 23 C 0.45 6.03 2.20 37.16 0.08 6.11 16 24 F -0.18 -2.33 16.58 2.25 0.04 -2.29 16 25 F -0.16 -2.17 15.09 2.25 0.03 -2.14 16 26 F -0.18 -2.36 16.62 2.25 0.04 -2.33 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.68 6.19 -51.93 -0.32 1.36 16 31 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 32 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 33 H 0.11 1.89 6.14 -51.93 -0.32 1.57 16 34 H 0.08 1.09 7.22 -51.93 -0.37 0.71 16 35 H 0.40 5.44 5.81 -40.82 -0.24 5.21 16 36 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.50 8.07 -51.92 -0.42 1.08 16 40 H 0.06 0.79 6.03 -51.93 -0.31 0.48 16 41 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -30.24 377.81 -6.56 -36.80 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.52 Total: 5.61 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.63 Total: 10.28 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.04 Total: -49.45 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.23 Total: -18.64 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.24 -6.56 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932340073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.988 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds