Wall clock time and date at job start Tue Mar 31 2020 21:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 C 1.52995 * 109.46909 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47702 * 300.00144 * 4 3 2 6 6 N 1.46503 * 109.47130 * 180.02562 * 4 3 2 7 7 C 1.34776 * 119.99939 * 57.96326 * 6 4 3 8 8 O 1.21581 * 119.99971 * 5.08600 * 7 6 4 9 9 N 1.34773 * 120.00031 * 185.07730 * 7 6 4 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47022 * 90.00585 * 10 9 7 12 12 H 1.08002 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99546 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47142 * 60.00426 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47528 * 300.00166 * 15 13 11 19 19 C 1.46501 * 119.99937 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47463 * 89.99738 * 19 9 7 21 21 C 1.53001 * 117.49952 * 243.62309 * 20 19 9 22 22 C 1.52997 * 59.99980 * 252.50843 * 21 20 19 23 23 C 1.53000 * 109.47059 * 60.00203 * 4 3 2 24 24 F 1.39904 * 109.47277 * 54.72542 * 23 4 3 25 25 F 1.39895 * 109.47424 * 294.72197 * 23 4 3 26 26 F 1.39899 * 109.47147 * 174.71874 * 23 4 3 27 27 H 1.09007 * 109.46569 * 300.00132 * 1 2 3 28 28 H 1.08998 * 109.47207 * 59.99689 * 1 2 3 29 29 H 1.08994 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47093 * 60.00457 * 3 2 1 31 31 H 1.08996 * 109.47210 * 300.00223 * 3 2 1 32 32 H 1.08996 * 109.48020 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47097 * 300.00545 * 5 4 3 34 34 H 1.09005 * 109.47201 * 59.99799 * 5 4 3 35 35 H 0.97001 * 120.00283 * 237.96631 * 6 4 3 36 36 H 1.08999 * 109.47462 * 210.00471 * 10 9 7 37 37 H 1.09003 * 109.47196 * 330.00495 * 10 9 7 38 38 H 0.96998 * 119.99650 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.46885 * 209.99400 * 19 9 7 40 40 H 1.08995 * 109.47244 * 329.99292 * 19 9 7 41 41 H 1.09004 * 115.54905 * 29.32167 * 20 19 9 42 42 H 1.09004 * 117.49299 * 359.97438 * 21 20 19 43 43 H 1.08998 * 117.50200 * 145.01788 * 21 20 19 44 44 H 1.08997 * 117.49703 * 252.51180 * 22 21 20 45 45 H 1.09002 * 117.50418 * 107.48788 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2482 6 7 4.1314 2.5229 0.0000 7 6 3.8403 3.3898 0.9901 8 8 3.1578 3.0316 1.9304 9 7 4.3057 4.6535 0.9379 10 6 3.9888 5.5959 2.0138 11 6 5.0510 5.5167 3.0800 12 1 5.8794 4.8331 2.9671 13 6 4.9651 6.3170 4.1994 14 7 3.9565 7.1498 4.3366 15 14 6.2813 6.2182 5.5212 16 1 7.6003 6.5643 4.9332 17 1 5.9602 7.1736 6.6119 18 1 6.3302 4.8389 6.0692 19 6 5.1277 5.0851 -0.1954 20 6 4.2248 5.6441 -1.2968 21 6 4.2015 4.9031 -2.6352 22 6 4.9034 6.2579 -2.5230 23 6 3.9864 0.4256 -1.2502 24 9 3.4712 1.0542 -2.3890 25 9 3.5163 -0.8908 -1.1913 26 9 5.3839 0.4193 -1.3131 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 5.0741 0.3385 1.2475 33 1 3.6662 0.9658 2.1385 34 1 3.5442 -0.5707 1.2482 35 1 4.7355 2.7852 -0.7122 36 1 3.9528 6.6082 1.6113 37 1 3.0208 5.3420 2.4457 38 1 3.8960 7.7125 5.1243 39 1 5.8218 5.8588 0.1330 40 1 5.6886 4.2343 -0.5823 41 1 3.2942 6.0982 -0.9565 42 1 4.8299 4.0175 -2.7311 43 1 3.2555 4.8695 -3.1756 44 1 4.4191 7.1157 -2.9896 45 1 5.9932 6.2636 -2.5450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932340073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:10 Heat of formation + Delta-G solvation = -207.577582 kcal Electronic energy + Delta-G solvation = -32386.808433 eV Core-core repulsion = 27604.466579 eV Total energy + Delta-G solvation = -4782.341854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.23544 -48.72952 -48.64872 -41.59322 -39.31945 -38.39825 -36.99151 -35.94607 -34.64820 -32.41425 -29.54909 -28.55484 -27.71844 -27.43863 -26.39705 -25.00354 -23.21091 -22.56348 -21.83310 -20.56665 -19.99547 -19.52617 -19.40488 -18.55465 -18.24481 -17.48715 -17.30596 -16.72599 -16.61097 -16.14902 -16.11460 -15.88603 -15.55229 -15.47131 -15.10249 -15.03353 -14.83357 -14.81672 -14.77614 -14.75658 -14.33484 -14.07931 -13.92500 -13.67441 -13.26524 -13.15344 -12.89714 -12.71840 -12.61073 -12.51741 -12.48769 -12.31513 -12.28189 -12.14973 -11.73847 -11.28187 -11.10087 -10.79617 -10.65027 -10.59474 -10.43663 -9.40889 -8.18039 -6.31657 1.22783 1.39724 1.43018 1.50147 1.60764 2.10665 2.41077 2.43139 2.61138 2.77310 2.97515 3.02103 3.12193 3.29515 3.58667 3.76061 3.83841 3.98592 4.11105 4.24099 4.25075 4.44949 4.50600 4.56624 4.59886 4.64214 4.67692 4.77863 4.81928 4.83143 4.96734 5.05872 5.15673 5.20060 5.26023 5.28459 5.32423 5.59306 5.76367 5.97245 6.01356 6.10790 6.76745 7.02336 7.34714 7.63690 8.88365 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.004235 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.687881 B = 6610.190407 C = 7649.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.054 3.946 4 C 0.162 3.838 5 C -0.161 4.161 6 N -0.727 5.727 7 C 0.711 3.289 8 O -0.613 6.613 9 N -0.608 5.608 10 C 0.282 3.718 11 C -0.540 4.540 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.962 3.038 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.143 3.857 20 C -0.190 4.190 21 C -0.169 4.169 22 C -0.158 4.158 23 C 0.466 3.534 24 F -0.174 7.174 25 F -0.159 7.159 26 F -0.176 7.176 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.025 0.975 37 H 0.003 0.997 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -11.352 -16.816 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.024 4.024 4 C 0.072 3.928 5 C -0.219 4.219 6 N -0.389 5.389 7 C 0.413 3.587 8 O -0.493 6.493 9 N -0.342 5.342 10 C 0.161 3.839 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.019 3.981 20 C -0.210 4.210 21 C -0.206 4.206 22 C -0.195 4.195 23 C 0.411 3.589 24 F -0.156 7.156 25 F -0.140 7.140 26 F -0.158 7.158 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.043 0.957 37 H 0.021 0.979 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.990 -11.619 -16.049 19.838 hybrid contribution 0.452 0.612 0.542 0.935 sum -0.537 -11.006 -15.507 19.023 Atomic orbital electron populations 1.22964 0.78810 1.04363 1.00688 1.87815 1.21921 1.25763 1.95654 1.22759 0.90303 0.86421 1.02911 1.20984 0.94467 0.83495 0.93811 1.22207 1.02305 1.01069 0.96276 1.44815 1.52583 1.12318 1.29225 1.15769 0.80128 0.80996 0.81841 1.90830 1.45309 1.77407 1.35747 1.47335 1.53501 1.09392 1.23934 1.18634 0.95023 0.86476 0.83783 1.21687 1.09069 1.21857 1.05230 0.92926 1.25754 0.98037 0.94784 1.00155 1.70032 1.31818 1.25022 1.29813 0.85549 0.79557 0.77697 0.78470 1.18711 1.20563 1.20453 1.21157 0.92105 1.00034 0.84759 1.22697 1.01708 1.06567 0.90009 1.23103 1.03010 0.96234 0.98237 1.23018 1.00697 0.96834 0.98977 1.20078 0.75116 0.78968 0.84746 1.93196 1.86719 1.82046 1.53599 1.93230 1.88208 1.36190 1.96361 1.93200 1.29470 1.96406 1.96689 0.94053 0.92943 0.87189 0.91114 0.91472 0.90930 0.90559 0.88891 0.75209 0.95737 0.97900 0.92510 0.89997 0.89733 0.89599 0.87928 0.88392 0.87972 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.39 -10.18 8.45 -148.98 -1.26 -11.44 16 3 C 0.05 1.55 4.53 71.98 0.33 1.88 16 4 C 0.16 4.56 0.46 3.60 0.00 4.56 16 5 C -0.16 -4.74 8.03 71.98 0.58 -4.16 16 6 N -0.73 -21.99 4.86 -438.03 -2.13 -24.12 16 7 C 0.71 28.62 7.68 179.06 1.38 30.00 16 8 O -0.61 -29.65 12.15 -3.97 -0.05 -29.70 16 9 N -0.61 -24.98 2.46 -844.19 -2.07 -27.05 16 10 C 0.28 14.72 5.16 85.63 0.44 15.16 16 11 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 12 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 13 C 0.01 0.67 5.46 84.66 0.46 1.13 16 14 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 15 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.14 4.37 5.50 86.38 0.47 4.84 16 20 C -0.19 -4.96 6.01 -10.79 -0.06 -5.02 16 21 C -0.17 -3.29 10.18 30.59 0.31 -2.98 16 22 C -0.16 -3.04 10.25 30.59 0.31 -2.73 16 23 C 0.47 11.29 2.20 71.98 0.16 11.45 16 24 F -0.17 -3.98 16.58 44.97 0.75 -3.23 16 25 F -0.16 -3.91 15.09 44.97 0.68 -3.24 16 26 F -0.18 -4.10 16.62 44.97 0.75 -3.35 16 27 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.48 6.19 -2.39 -0.01 2.46 16 31 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16 32 H 0.07 1.99 7.94 -2.39 -0.02 1.97 16 33 H 0.08 2.78 6.14 -2.38 -0.01 2.77 16 34 H 0.09 2.46 7.22 -2.38 -0.02 2.44 16 35 H 0.41 10.39 5.81 -92.71 -0.54 9.86 16 36 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 37 H 0.00 0.17 7.42 -2.39 -0.02 0.16 16 38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 40 H 0.08 2.11 6.03 -2.39 -0.01 2.09 16 41 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 42 H 0.10 1.74 7.91 -2.39 -0.02 1.72 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.17 377.81 5.32 -61.85 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.48 Total: 22.80 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 5.87 Total: 25.86 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.92 Total: -105.94 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.31 Total: -41.13 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 2.17 Total: -9.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.17 5.32 -61.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932340073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.730 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds