Wall clock time and date at job start Tue Mar 31 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47503 * 2 1 4 4 O 1.42901 * 109.47108 * 120.00804 * 2 1 3 5 5 C 1.42895 * 114.00631 * 126.43310 * 4 2 1 6 6 C 1.52998 * 112.84999 * 65.07279 * 5 4 2 7 7 N 1.46499 * 109.47225 * 60.52868 * 6 5 4 8 8 C 1.34775 * 119.99851 * 183.84582 * 7 6 5 9 9 O 1.21588 * 120.00208 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99672 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99827 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47427 * 35.00061 * 11 10 8 13 13 C 1.50699 * 109.46874 * 154.99897 * 11 10 8 14 14 H 1.07996 * 120.00592 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00121 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99958 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00388 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47066 * 59.99890 * 17 15 13 19 19 H 1.48497 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46870 * 299.99969 * 17 15 13 21 21 C 1.53001 * 109.47278 * 274.99592 * 11 10 8 22 22 F 1.39905 * 109.46558 * 60.00013 * 21 11 10 23 23 F 1.39899 * 109.47134 * 179.97438 * 21 11 10 24 24 F 1.39898 * 109.47176 * 300.00565 * 21 11 10 25 25 C 1.53777 * 113.61615 * 196.27157 * 5 4 2 26 26 C 1.53956 * 87.02187 * 89.22785 * 25 5 4 27 27 C 1.53784 * 113.61287 * 293.88010 * 5 4 2 28 28 H 1.08999 * 109.47039 * 299.99939 * 1 2 3 29 29 H 1.09006 * 109.46808 * 59.99425 * 1 2 3 30 30 H 1.09001 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46672 * 239.99759 * 2 1 3 32 32 H 1.09001 * 109.47350 * 302.47097 * 3 2 1 33 33 H 1.09004 * 109.46980 * 62.47435 * 3 2 1 34 34 H 1.09009 * 109.47238 * 182.47074 * 3 2 1 35 35 H 1.09002 * 109.47149 * 180.53582 * 6 5 4 36 36 H 1.09006 * 109.46933 * 300.52775 * 6 5 4 37 37 H 0.96997 * 119.99785 * 3.84718 * 7 6 5 38 38 H 0.96997 * 119.99963 * 359.97438 * 10 8 7 39 39 H 0.96999 * 120.00604 * 180.02562 * 16 15 13 40 40 H 1.08996 * 113.61313 * 203.74518 * 25 5 4 41 41 H 1.08999 * 113.61373 * 334.64976 * 25 5 4 42 42 H 1.09000 * 113.53554 * 270.81376 * 26 25 5 43 43 H 1.08991 * 113.66917 * 139.93341 * 26 25 5 44 44 H 1.08998 * 113.61532 * 25.34427 * 27 5 4 45 45 H 1.08996 * 113.61735 * 156.25306 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.9310 -1.7281 0.8923 6 6 4.2397 -1.2260 0.2792 7 7 4.8933 -0.3036 1.2109 8 6 6.0285 0.3268 0.8500 9 8 6.5100 0.1304 -0.2490 10 7 6.6300 1.1750 1.7075 11 6 7.8637 1.8608 1.3150 12 1 7.8277 2.0926 0.2506 13 6 8.0009 3.1380 2.1030 14 1 7.2446 3.4119 2.8236 15 6 9.0914 3.9576 1.9031 16 7 10.0117 3.6250 1.0244 17 14 9.2619 5.5405 2.8802 18 1 9.3119 5.2241 4.3303 19 1 10.5123 6.2356 2.4823 20 1 8.0972 6.4198 2.6053 21 6 9.0634 0.9548 1.5994 22 9 8.9360 -0.2310 0.8680 23 9 10.2415 1.6094 1.2241 24 9 9.1096 0.6572 2.9656 25 6 3.1339 -2.6923 2.0729 26 6 1.9574 -3.5073 1.5054 27 6 2.3085 -2.9111 0.1320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.6410 1.9689 -0.8670 33 1 1.7134 1.9433 0.9114 34 1 3.1292 1.4427 -0.0443 35 1 4.8979 -2.0727 0.0842 36 1 4.0275 -0.7079 -0.6561 37 1 4.5089 -0.1466 2.0876 38 1 6.2457 1.3320 2.5842 39 1 10.7792 4.2013 0.8840 40 1 4.0859 -3.2225 2.0450 41 1 2.9267 -2.2431 3.0442 42 1 0.9856 -3.1900 1.8836 43 1 2.1039 -4.5857 1.5636 44 1 1.4359 -2.6381 -0.4614 45 1 3.0343 -3.5011 -0.4275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:06 Heat of formation + Delta-G solvation = -196.502559 kcal Electronic energy + Delta-G solvation = -31656.283215 eV Core-core repulsion = 26874.421610 eV Total energy + Delta-G solvation = -4781.861605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.27979 -45.93153 -45.55237 -40.49848 -38.98540 -36.54699 -34.79755 -33.84923 -32.49062 -32.25482 -28.95220 -27.33996 -27.06743 -26.00383 -24.50876 -22.99779 -21.64045 -21.25110 -20.11510 -19.61523 -18.34575 -17.06485 -16.77021 -16.63763 -16.54051 -16.11426 -15.53149 -15.38265 -14.99011 -14.73659 -14.55550 -14.50977 -13.85754 -13.57619 -13.49970 -13.09668 -12.85185 -12.74925 -12.54428 -12.46677 -12.39556 -12.33292 -12.31155 -12.22094 -11.91490 -11.85847 -11.75889 -11.62344 -11.16219 -11.13871 -10.92208 -10.85923 -10.83871 -10.75126 -10.36945 -10.26470 -9.67229 -9.60856 -9.43471 -8.74128 -8.66710 -8.09825 -6.20211 -4.43790 3.11590 3.21899 3.26796 3.28776 3.45105 3.84957 4.20793 4.30265 4.34504 4.53989 4.58111 4.63834 4.81091 4.93760 4.95584 4.97333 5.08279 5.08757 5.43561 5.46987 5.48112 5.51153 5.59379 5.65755 5.67159 5.75163 5.77817 5.82759 5.90934 5.94389 5.97270 6.07135 6.10112 6.25113 6.27945 6.83058 6.90261 7.17704 7.27198 7.42635 7.66249 7.75536 8.53229 8.73071 9.19372 9.31305 10.71467 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.003317 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.608323 B = 8438.207192 C = 9414.615997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.082 3.918 3 C -0.166 4.166 4 O -0.350 6.350 5 C 0.079 3.921 6 C 0.131 3.869 7 N -0.744 5.744 8 C 0.698 3.302 9 O -0.588 6.588 10 N -0.726 5.726 11 C 0.263 3.737 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.416 3.584 22 F -0.217 7.217 23 F -0.138 7.138 24 F -0.210 7.210 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.159 4.159 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.394 0.606 39 H 0.268 0.732 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.727 -9.709 0.425 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.269 6.269 5 C 0.039 3.961 6 C 0.006 3.994 7 N -0.401 5.401 8 C 0.398 3.602 9 O -0.465 6.465 10 N -0.379 5.379 11 C 0.157 3.843 12 H 0.102 0.898 13 C -0.588 4.588 14 H 0.094 0.906 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.359 3.641 22 F -0.199 7.199 23 F -0.119 7.119 24 F -0.192 7.192 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.197 4.197 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.229 0.771 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.089 -9.777 -0.535 18.835 hybrid contribution 0.152 0.735 1.082 1.316 sum -15.938 -9.042 0.547 18.332 Atomic orbital electron populations 1.22052 0.94776 1.02165 1.02437 1.22041 0.93865 0.93200 0.88468 1.22169 1.02561 0.95427 1.02224 1.87941 1.60522 1.47461 1.30959 1.22871 0.88655 0.86863 0.97751 1.21539 0.91866 0.93273 0.92729 1.44878 1.26869 1.48879 1.19494 1.16075 0.80171 0.79222 0.84710 1.90910 1.66275 1.67888 1.21452 1.45248 1.27886 1.46621 1.18134 1.19570 0.75844 0.88261 1.00637 0.89817 1.20841 1.09561 1.03559 1.24870 0.90578 1.25072 0.94821 0.98849 0.95623 1.70394 1.10024 1.35367 1.31559 0.86281 0.77687 0.81838 0.80070 1.19855 1.20903 1.19822 1.23188 0.89339 0.78932 0.72621 1.93071 1.96382 1.52304 1.78119 1.93397 1.49652 1.78246 1.90631 1.92981 1.97197 1.94039 1.35016 1.23023 0.99451 0.95745 0.97831 1.22778 0.98894 0.99515 0.95857 1.23506 1.01381 0.97398 0.97446 0.91879 0.91599 0.92461 0.91787 0.91854 0.91918 0.91541 0.91108 0.91688 0.77075 0.77271 0.92106 0.88515 0.90275 0.89840 0.91228 0.90757 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.56 37.16 0.36 -0.93 16 2 C 0.08 0.82 2.36 -26.74 -0.06 0.76 16 3 C -0.17 -1.86 9.56 37.15 0.36 -1.50 16 4 O -0.35 -3.84 9.79 -35.23 -0.34 -4.19 16 5 C 0.08 0.80 0.50 -89.81 -0.05 0.76 16 6 C 0.13 1.72 4.86 -4.04 -0.02 1.70 16 7 N -0.74 -11.22 5.47 -65.22 -0.36 -11.58 16 8 C 0.70 14.14 8.10 -86.92 -0.70 13.44 16 9 O -0.59 -14.29 14.91 5.29 0.08 -14.21 16 10 N -0.73 -15.14 4.99 -59.81 -0.30 -15.44 16 11 C 0.26 6.65 2.21 -69.08 -0.15 6.50 16 12 H 0.08 2.38 7.58 -51.93 -0.39 1.98 16 13 C -0.55 -14.17 8.46 -34.44 -0.29 -14.46 16 14 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 15 C 0.07 1.71 5.20 -17.82 -0.09 1.61 16 16 N -0.84 -23.23 9.51 55.43 0.53 -22.70 16 17 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.42 10.87 2.81 37.16 0.10 10.97 16 22 F -0.22 -5.66 15.67 2.25 0.04 -5.63 16 23 F -0.14 -3.88 12.92 2.25 0.03 -3.85 16 24 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 25 C -0.12 -1.11 7.44 -25.83 -0.19 -1.30 16 26 C -0.13 -1.03 8.02 -25.82 -0.21 -1.24 16 27 C -0.16 -1.32 6.98 -25.91 -0.18 -1.50 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.93 7.24 -51.93 -0.38 0.55 16 37 H 0.40 5.18 8.49 -40.82 -0.35 4.84 16 38 H 0.39 7.13 8.55 -40.82 -0.35 6.78 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.59 7.40 -51.93 -0.38 0.20 16 45 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -30.76 376.43 -7.56 -38.33 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.79 Total: 8.85 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -1.13 Total: 14.80 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.13 Total: -49.72 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.40 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 0.10 Total: -14.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.76 -7.56 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.175 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds